FFCP PHASE1:Hg19::chr17:79478315..79478340,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:79478315..79478340,- to FFCP PHASE1:Hg19::chr17:79478315..79478340,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=71 | |EntrezGene=71 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=144 | |HGNC=144 | ||
|TSSclassifier=strong | |||
|UniProt=Q96DE1 | |UniProt=Q96DE1 | ||
|association_with_transcript=27bp_to_BC009544_5end | |||
|cluster_id=chr17:79478315..79478340,- | |||
|coexpression_cluster_id=C3698 | |||
|description=CAGE_peak_9_at_ACTG1_5end | |||
|id=chr17:79478315..79478340,- | |||
|ontology_enrichment_celltype=CL:0000055!3.64e-11!180;CL:0002321!4.60e-10!248;CL:0000220!1.14e-09!246;CL:0000393!1.11e-08!60;CL:0000211!1.11e-08!60;CL:0000222!1.34e-08!119;CL:0000192!1.51e-07!42;CL:0000514!1.51e-07!42;CL:0000144!2.33e-07!625;CL:0000680!2.34e-07!57;CL:0000056!2.34e-07!57;CL:0000355!2.34e-07!57;CL:0000183!2.39e-07!59;CL:0000187!6.14e-07!54;CL:0002371!6.76e-07!591 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,2.71e-10,250;CL:0000222,3.59e-09,121;CL:0000393,8.60e-09,61;CL:0000211,8.60e-09,61;CL:0000192,7.83e-08,43;CL:0000514,7.83e-08,43;CL:0000680,2.27e-07,58;CL:0000056,2.27e-07,58;CL:0000355,2.27e-07,58;CL:0000187,6.58e-07,55 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001637!1.03e-08!42;UBERON:0003509!1.03e-08!42;UBERON:0004572!1.03e-08!42;UBERON:0002049!3.05e-08!79;UBERON:0007798!3.05e-08!79;UBERON:0000486!5.25e-08!82;UBERON:0004290!1.12e-07!70;UBERON:0000914!1.28e-07!83;UBERON:0002329!1.28e-07!83;UBERON:0003077!1.28e-07!83;UBERON:0003059!1.28e-07!83;UBERON:0007282!1.28e-07!83;UBERON:0009618!1.28e-07!83;UBERON:0007285!1.28e-07!83;UBERON:0003914!1.37e-07!118;UBERON:0005256!2.57e-07!143;UBERON:0000055!2.70e-07!69;UBERON:0001981!3.92e-07!60;UBERON:0007500!3.92e-07!60;UBERON:0004537!3.92e-07!60;UBERON:0006965!3.92e-07!60 | |||
|ontology_enrichment_uberon_v019=UBERON:0003914;6.82e-07;74 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,2.22e-09,78;UBERON:0001637,5.94e-09,42;UBERON:0003509,5.94e-09,42;UBERON:0004572,5.94e-09,42;UBERON:0002049,6.60e-09,78;UBERON:0007798,6.60e-09,78;UBERON:0003914,3.25e-08,117;UBERON:0007500,5.63e-08,59;UBERON:0001981,5.63e-08,59;UBERON:0004537,5.63e-08,59;UBERON:0006965,5.63e-08,59;UBERON:0000055,8.88e-08,68;UBERON:0000486,1.23e-07,83;UBERON:0007524,1.52e-07,73;UBERON:0002329,1.83e-07,71;UBERON:0003059,1.83e-07,71;UBERON:0007282,1.83e-07,71;UBERON:0004290,1.83e-07,71;UBERON:0009618,1.83e-07,71;UBERON:0003077,3.96e-07,72;UBERON:0007285,3.96e-07,72 | |||
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| ||
|short_description=p9@ACTG1 | |||
}} | }} |
Latest revision as of 07:14, 18 September 2015
Short description: | p9@ACTG1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_ACTG1_5end |
Coexpression cluster: | C3698_Olfactory_Hair_Neurons_Fibroblast_Endothelial_Adipocyte_Smooth |
Association with transcript: | 27bp_to_BC009544_5end |
EntrezGene: | ACTG1 |
HGNC: | 144 |
UniProt: | Q96DE1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 2.71e-10 | 250 |
mesodermal cell | 3.59e-09 | 121 |
electrically responsive cell | 8.60e-09 | 61 |
electrically active cell | 8.60e-09 | 61 |
smooth muscle cell | 7.83e-08 | 43 |
smooth muscle myoblast | 7.83e-08 | 43 |
muscle precursor cell | 2.27e-07 | 58 |
myoblast | 2.27e-07 | 58 |
multi-potent skeletal muscle stem cell | 2.27e-07 | 58 |
muscle cell | 6.58e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 2.22e-09 | 78 |
artery | 5.94e-09 | 42 |
arterial blood vessel | 5.94e-09 | 42 |
arterial system | 5.94e-09 | 42 |
vasculature | 6.60e-09 | 78 |
vascular system | 6.60e-09 | 78 |
epithelial tube | 3.25e-08 | 117 |
epithelial tube open at both ends | 5.63e-08 | 59 |
blood vessel | 5.63e-08 | 59 |
blood vasculature | 5.63e-08 | 59 |
vascular cord | 5.63e-08 | 59 |
vessel | 8.88e-08 | 68 |
multilaminar epithelium | 1.23e-07 | 83 |
dense mesenchyme tissue | 1.52e-07 | 73 |
somite | 1.83e-07 | 71 |
presomitic mesoderm | 1.83e-07 | 71 |
presumptive segmental plate | 1.83e-07 | 71 |
dermomyotome | 1.83e-07 | 71 |
trunk paraxial mesoderm | 1.83e-07 | 71 |
paraxial mesoderm | 3.96e-07 | 72 |
presumptive paraxial mesoderm | 3.96e-07 | 72 |