FFCP PHASE1:Hg19::chr19:54376870..54376881,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:54376870..54376881,+ to FFCP PHASE1:Hg19::chr19:54376870..54376881,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=87bp_to_CU680730_5end | |||
|cluster_id=chr19:54376870..54376881,+ | |||
|coexpression_cluster_id=C482 | |||
|description=CAGE_peak_3_at_CU680730_5end | |||
|id=chr19:54376870..54376881,+ | |||
|ontology_enrichment_celltype=CL:0002057!2.16e-16!42;CL:0000860!3.13e-14!45;CL:0000048!1.29e-10!430;CL:0000766!1.35e-10!76;CL:0000723!4.85e-10!436;CL:0000557!9.06e-10!71;CL:0000034!2.84e-09!444;CL:0000839!8.97e-09!70;CL:0000134!1.28e-08!358;CL:0002009!4.25e-08!65;CL:0002320!5.84e-08!365;CL:0002194!1.47e-07!63;CL:0000576!1.47e-07!63;CL:0000040!1.47e-07!63;CL:0000559!1.47e-07!63 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.00e-33;33!CL:0002057;2.00e-33;33!CL:0000473;7.50e-24;39!CL:0000234;7.50e-24;39!CL:0000576;3.78e-15;48!CL:0000766;2.31e-14;69!CL:0002334;4.14e-07;12!CL:0000763;4.32e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.44e-29,42;CL:0002057,1.44e-29,42;CL:0000473,1.22e-26,48;CL:0000234,1.22e-26,48;CL:0000766,6.50e-26,72;CL:0000839,1.69e-22,66;CL:0000557,5.28e-22,67;CL:0002194,2.52e-19,59;CL:0000576,2.52e-19,59;CL:0000040,2.52e-19,59;CL:0000559,2.52e-19,59;CL:0002009,2.17e-18,61;CL:0000763,3.09e-14,108;CL:0000049,3.09e-14,108;CL:0000134,2.05e-11,354;CL:0000048,6.59e-11,427;CL:0002320,8.59e-11,361;CL:0000723,1.95e-10,433;CL:0000034,7.84e-10,441;CL:0000219,1.22e-08,386;CL:0000738,1.62e-08,136;CL:0002031,5.72e-08,120;CL:0002334,9.77e-07,12 | |||
|ontology_enrichment_development_v019=CL:0002057;1.48e-21;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!4.76e-10!216;UBERON:0002371!1.79e-09!80;UBERON:0002204!3.79e-09!167;UBERON:0002390!1.81e-08!102;UBERON:0003061!1.81e-08!102;UBERON:0001474!2.17e-08!86;UBERON:0000926!8.45e-08!448;UBERON:0004120!8.45e-08!448;UBERON:0006603!8.45e-08!448;UBERON:0004765!1.61e-07!101;UBERON:0001434!1.61e-07!101;UBERON:0002193!2.37e-07!112;UBERON:0002384!3.88e-07!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.16e-19,76;UBERON:0001474,2.98e-18,82;UBERON:0002390,1.21e-16,98;UBERON:0003061,1.21e-16,98;UBERON:0003081,2.46e-16,203;UBERON:0000926,6.91e-16,315;UBERON:0004120,6.91e-16,315;UBERON:0006603,6.91e-16,315;UBERON:0004765,1.14e-15,90;UBERON:0002193,4.91e-15,108;UBERON:0002405,5.59e-15,93;UBERON:0001434,7.36e-15,100;UBERON:0002204,1.30e-11,167;UBERON:0002384,5.96e-10,371 | |||
|phase1_expression=1.09007027562334,2.35510576280081,1.69145284915165,2.00146596706261,0.893922188854576,0.872338524100369,0,0,0,0.491467873003018,2.09340350391728,0.436882744260345,0.263766978228454,0.123766352960047,0,0.672325146451775,0,0.730310090387373,0.975865597581014,0,0.408001382488506,0.313454721478088,0.286235987131057,0.136874425072884,0.376627918784408,0,0,0,1.18009283054671,0.767658796194425,0.154816123316076,0,0,0.369754010166788,0,0,0.293600439334847,0,1.20326668482085,0.651032612147555,0,0,0,7.70610665531693,4.91238726795452,5.82201746850759,5.34586784883075,2.87817521615278,1.54853185447552,1.7261543539329,3.07392847834921,0.236482229888585,3.44745680736619,0.645484683583826,2.70852973188684,4.70605848856512,3.547779950752,1.79778787556068,6.42776173978895,1.92557416245656,4.47535988059329,2.96866170168044,2.39356389145958,4.68847225585964,5.80418477257168,4.53908179752912,5.60540024096017,2.26123798731069,1.5644487552606,2.17188844705117,7.26479403160043,1.47311054395026,1.89877432464531,0.211255286311942,0.425208599930087,0,0.44931452458598,0.600707571366025,0.64290234678832,0.570025487482497,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0,0.526768169550154,0.590129310341499,0.786021525498329,0.616804496998528,0,0,0,0,0.222820913770347,0.294605907474837,0,0,0.128091319725675,0,0.164437904603676,0,0.289803085735052,0.444859689486181,0,0,0.226618685395132,0,0,0,0.318565414324097,0,0,0,0,0,0.236777252044017,0,0,0,0.144824403882799,2.43806866313962,0,0,0.722878304769133,0.50133791063589,0.434539556882471,1.5905718941022,0,0.189069634328136,0.665188192387692,0.43917392846563,0.392937226493138,0.728590576585084,0.370784442784429,0,0,0.132957960518865,0.238490624305342,0,0,0,0,0.347140501607594,0,0,0.275118041940067,0.626984899610432,0,0,0,0,0,0.732186172644509,0,0,0.357198913136319,0,0,0,0,0,0,0,0,0.496971951695318,0.506522046658319,0.397227542439656,2.86836620748814,1.06400514659507,0,2.1349799145941,0.49333509683432,0,0.538842688278752,0.326923806226917,0.302714855289863,0,0,0.624320153660641,0,0.448346041655403,0,0,0.280901613404497,0.204154171254893,0.122834317311768,0.413303124703062,1.18800285728205,0.247266929278557,1.82032272387605,0.718618141816238,0.336672227908132,0.500474079487857,0,0,1.22595118319608,0.600952235626387,0.453728732640084,1.25572744982203,0.85422955527427,0.211931901159562,0.600182192168805,0.92747276314595,0.772921620136887,0.37223371266318,1.18143432568886,0.779496041289589,0.504867548488229,0.644349290496095,0.969876340912871,0.710019185033229,0.503760491138201,0.508681776931463,0.193260853163297,0.272746120590835,0,0,0,0.116193942869518,0.310983165046111,0,0,0,1.28648187638577,1.38134921352481,0.928735856063958,0,0.236613600079688,0,0,0,0,0.237270619111097,0,0.196221465125346,0,1.4763109092493,2.80483547606892,0,1.47008711385542,0,0,0.590789906681404,0,0.122988438543114,0.171567810298526,0.219500570817251,0,0.201057944823262,0.185176890317059,0,2.07986957055916,0,0.115930404975077,0.234817388471643,0.433099343283221,0,0.380508304469197,0,0,0,0,0,0,0.16798212819886,0.283550194484773,0.0895585227028483,0,1.15014803749563,11.3312544716067,0.968532774145487,3.31724984865235,2.30591925467138,3.40854570251226,0,0,0,0,0.308482478109971,0,0.285826432630578,0.224262168690721,0.43596006883328,0.22001485746285,0.387815147273333,0,0,1.32969058292435,2.08014873822732,0,1.41849132023278,0.532844358032199,0.57191197463259,0,0.823240336780769,0,0,0,0.301439377059586,0.871533458600294,0.899756920638513,0,0,2.10833939483032,0.239624855491583,1.14861935834114,0,0.144781306667579,0,0.358121926479791,0,0.788123040807709,0.862510299438069,0.128343036279748,0.508189248444927,1.30139853857622,0,0.167516265334349,0.637938751653163,3.74503511973591,8.97484377612075,2.07207756718018,0.24538298343828,0,0,0.623912584592421,1.60586089917446,0.630809660135739,0.702848489956279,0.601892199455438,0,0,0,0.184369168541703,0.695068915744663,0,0.343143423810856,0.413536052245775,0.862856803274467,0.320182673410333,0,0,0.604780586659361,1.24053903909388,1.2276957863045,0.841980283299221,1.15325234330131,1.02341449813341,1.28683136914886,1.48418066444991,1.3878872442239,0.355123450626254,0.574890092096664,3.11552657510173,0.232420756919918,0.483437798366489,1.60405176242628,0,0.574072240823034,1.45672934405374,1.44236856455367,0.451199612907412,0.0770153371044148,0,0,0.316654886678627,0,0.510281115829547,0,1.54227252690289,0,1.00337954770971,0.254876273045038,0.831076008928724,0.223874754722178,0,0,0,0,0.325378394664303,0,0,0,0,0.650060246036521,1.6068392984416,0.193341436584244,0.308097234229289,0.15350367472613,0.551346289938122,0.214840489736547,0.145016693914229,0.0852266274161009,0.356128142586949,0.165284915360978,0.576570202095319,0,0.10115778085555,0,4.40737285562896,0,0,1.59691809095107,0,2.59453906745488,0.572499546967965,0,0,0.38126038784765,0.255897791311334,0,0.95460974377781,2.35484592059769,0,0.54907405947211,0.824686816419805,0.606547444719948,0,0.842516912477962,0,1.21856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| ||
|short_description=p3@CU680730 | |||
}} | }} |
Latest revision as of 17:03, 27 July 2015
Short description: | p3@CU680730 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CU680730_5end |
Coexpression cluster: | C482_CD14_Mast_Fibroblast_Smooth_Neutrophils_Basophils_Mesenchymal |
Association with transcript: | 87bp_to_CU680730_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.44e-29 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.44e-29 | 42 |
defensive cell | 1.22e-26 | 48 |
phagocyte | 1.22e-26 | 48 |
myeloid leukocyte | 6.50e-26 | 72 |
myeloid lineage restricted progenitor cell | 1.69e-22 | 66 |
granulocyte monocyte progenitor cell | 5.28e-22 | 67 |
monopoietic cell | 2.52e-19 | 59 |
monocyte | 2.52e-19 | 59 |
monoblast | 2.52e-19 | 59 |
promonocyte | 2.52e-19 | 59 |
macrophage dendritic cell progenitor | 2.17e-18 | 61 |
myeloid cell | 3.09e-14 | 108 |
common myeloid progenitor | 3.09e-14 | 108 |
mesenchymal cell | 2.05e-11 | 354 |
multi fate stem cell | 6.59e-11 | 427 |
connective tissue cell | 8.59e-11 | 361 |
somatic stem cell | 1.95e-10 | 433 |
stem cell | 7.84e-10 | 441 |
motile cell | 1.22e-08 | 386 |
leukocyte | 1.62e-08 | 136 |
hematopoietic lineage restricted progenitor cell | 5.72e-08 | 120 |
preadipocyte | 9.77e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.16e-19 | 76 |
bone element | 2.98e-18 | 82 |
hematopoietic system | 1.21e-16 | 98 |
blood island | 1.21e-16 | 98 |
lateral plate mesoderm | 2.46e-16 | 203 |
mesoderm | 6.91e-16 | 315 |
mesoderm-derived structure | 6.91e-16 | 315 |
presumptive mesoderm | 6.91e-16 | 315 |
skeletal element | 1.14e-15 | 90 |
hemolymphoid system | 4.91e-15 | 108 |
immune system | 5.59e-15 | 93 |
skeletal system | 7.36e-15 | 100 |
musculoskeletal system | 1.30e-11 | 167 |
connective tissue | 5.96e-10 | 371 |