FFCP PHASE1:Hg19::chr1:100111777..100111820,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:100111777..100111820,+ to FFCP PHASE1:Hg19::chr1:100111777..100111820,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=54873 | |EntrezGene=54873 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15846 | |HGNC=15846 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NP74 | |UniProt=Q9NP74 | ||
|association_with_transcript=278bp_to_ENST00000263174_5end | |||
|cluster_id=chr1:100111777..100111820,+ | |||
|coexpression_cluster_id=C29 | |||
|description=CAGE_peak_4_at_PALMD_5end | |||
|id=chr1:100111777..100111820,+ | |||
|ontology_enrichment_celltype=CL:0002139!5.99e-18!24;CL:0000071!1.51e-13!18;CL:0002546!1.51e-13!18;CL:0000115!2.46e-11!35;CL:0002078!4.12e-09!44;CL:1000413!7.14e-08!9 | |||
|ontology_enrichment_celltype_v019=CL:0002139;1.51e-24;24!CL:0000071;2.24e-18;18!CL:0000115;2.82e-14;36!CL:1000413;2.47e-11;9!CL:0002078;8.05e-10;45!CL:0000136;5.36e-08;13!CL:0002138;9.91e-08;6!CL:0002544;1.21e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,7.08e-25,24;CL:0000071,1.26e-18,18;CL:0002546,1.26e-18,18;CL:0000115,6.52e-18,36;CL:0002078,2.83e-14,45;CL:1000413,1.21e-11,9;CL:0000213,1.11e-08,58;CL:0000215,1.11e-08,58;CL:0005020,8.26e-08,6;CL:0002138,8.26e-08,6;CL:0005022,8.26e-08,6;CL:0002544,1.17e-07,6;CL:0000136,9.14e-07,15 | |||
|ontology_enrichment_development_v019=CL:0002546;2.24e-18;18!CL:0005022;9.91e-08;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!8.79e-24!115;UBERON:0000477!8.79e-23!286;UBERON:0004111!2.88e-19!241;UBERON:0000025!9.19e-16!194;UBERON:0000467!7.32e-15!625;UBERON:0000480!1.05e-14!626;UBERON:0000483!7.29e-14!309;UBERON:0000468!1.08e-13!659;UBERON:0000119!1.16e-13!312;UBERON:0002049!1.31e-13!79;UBERON:0007798!1.31e-13!79;UBERON:0001986!1.51e-13!18;UBERON:0004638!1.51e-13!18;UBERON:0004852!1.51e-13!18;UBERON:0000055!5.12e-13!69;UBERON:0001017!1.91e-12!82;UBERON:0005743!1.98e-12!86;UBERON:0001009!1.44e-11!113;UBERON:0004872!1.70e-11!84;UBERON:0001981!4.99e-11!60;UBERON:0007500!4.99e-11!60;UBERON:0004537!4.99e-11!60;UBERON:0006965!4.99e-11!60;UBERON:0000073!5.32e-11!94;UBERON:0001016!5.32e-11!94;UBERON:0004535!2.09e-10!110;UBERON:0003075!2.14e-10!86;UBERON:0007284!2.14e-10!86;UBERON:0003080!8.29e-10!42;UBERON:0000481!8.97e-10!347;UBERON:0000487!1.16e-09!22;UBERON:0002616!1.98e-09!59;UBERON:0000955!1.99e-09!69;UBERON:0006238!1.99e-09!69;UBERON:0006914!2.07e-09!25;UBERON:0001049!2.47e-09!57;UBERON:0005068!2.47e-09!57;UBERON:0006241!2.47e-09!57;UBERON:0007135!2.47e-09!57;UBERON:0002346!3.46e-09!90;UBERON:0002780!3.57e-09!41;UBERON:0001890!3.57e-09!41;UBERON:0006240!3.57e-09!41;UBERON:0000153!5.56e-09!129;UBERON:0007811!5.56e-09!129;UBERON:0003914!6.58e-09!118;UBERON:0004121!6.83e-09!169;UBERON:0002050!6.86e-09!605;UBERON:0005423!6.86e-09!605;UBERON:0000922!7.31e-09!612;UBERON:0003056!7.74e-09!61;UBERON:0000923!1.07e-08!604;UBERON:0005291!1.07e-08!604;UBERON:0006598!1.07e-08!604;UBERON:0002532!1.07e-08!604;UBERON:0000033!2.66e-08!123;UBERON:0000924!3.74e-08!173;UBERON:0006601!3.74e-08!173;UBERON:0003915!7.14e-08!9;UBERON:0004700!7.14e-08!9;UBERON:0001917!7.14e-08!9;UBERON:0001869!7.43e-08!32;UBERON:0001893!1.16e-07!34;UBERON:0000490!1.30e-07!138;UBERON:0002020!1.33e-07!34;UBERON:0003528!1.33e-07!34;UBERON:0002791!1.66e-07!33;UBERON:0002619!5.10e-07!22;UBERON:0000475!5.16e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;2.24e-18;18!UBERON:0001986;2.24e-18;18!UBERON:0004852;2.24e-18;18!UBERON:0000487;3.14e-14;22!UBERON:0006914;5.22e-12;25!UBERON:0003915;2.47e-11;9!UBERON:0004700;2.47e-11;9!UBERON:0001917;2.47e-11;9!UBERON:0000490;1.52e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,1.26e-18,18;UBERON:0001986,1.26e-18,18;UBERON:0004852,1.26e-18,18;UBERON:0000487,1.99e-14,22;UBERON:0000055,1.87e-13,68;UBERON:0006914,3.54e-12,25;UBERON:0004111,4.06e-12,240;UBERON:0007023,8.64e-12,114;UBERON:0003915,1.21e-11,9;UBERON:0004700,1.21e-11,9;UBERON:0001917,1.21e-11,9;UBERON:0002049,1.47e-11,78;UBERON:0007798,1.47e-11,78;UBERON:0001009,2.10e-11,112;UBERON:0004872,6.88e-11,83;UBERON:0007500,2.82e-10,59;UBERON:0001981,2.82e-10,59;UBERON:0004537,2.82e-10,59;UBERON:0006965,2.82e-10,59;UBERON:0004535,3.41e-10,109;UBERON:0000025,4.93e-10,192;UBERON:0003914,1.19e-09,117;UBERON:0000483,9.63e-07,306 | |||
|phase1_expression=0.181678379270557,1.2846031433459,0.845726424575827,0,1.78784437770915,0,5.06599756336621,0,5.74608382039645,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383587685530591,0.361439152384566,0.50133791063589,0.724232594804119,0.795285947051099,0.973269740605272,0.661743720148475,1.33037638477538,0.351339142772504,0.785874452986276,0.364295288292542,0,0,0,0,0,0,0,3.9752481473341,0.860234595106124,2.42998351125316,5.6530794192401,3.35599548967925,1.92582629358047,1.67195973229448,6.46041897923322,6.04802646567407,9.0374565446461,2.81980521976403,4.56163263431108,1.22031028774085,4.04429388380456,3.24056779152704,5.17938424047663,2.69435247151404,2.70267553159973,3.06633274931766,0.949265659568129,0.549605231791222,0,0,0.436094052142534,0.496971951695318,0.506522046658319,1.45650098894541,0,0,1.12135520028461,0,0.24666754841716,0.311211035399766,1.34710672069688,1.14423332179421,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.751190294532984,1.81491493056034,0,0,0.211931901159562,0,0.103052529238439,0,0,0,0,0.252433774244115,0.276149695926898,0.80823028409406,0,0.10075209822764,0,0.386521706326594,0,0,0,0,0,0,0,0,0,1.28648187638577,0,0,0,1.53798840051797,0.674338760312407,0.482022059766964,0.992645754591546,0.871517776369625,0.71181185733329,0.539325232640658,1.76599318612811,0.38474715694639,2.21446636387394,0,0,0,1.26755034821831,0,0.590789906681404,0,0,0,0.219500570817251,0,0.100528972411631,0,0,0,0,0.811512834825538,0.939269553886573,1.73239737313289,0.925971025153221,3.23432058798817,0,0,0,0,0,0,0.16798212819886,0.141775097242386,0.0895585227028483,0,0,0,0,0.207328115540772,0.144119953416961,0,0.126995788584338,0,0,0,0,0,0,0,0,0.2933531432838,0,0,0,1.06375246633948,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,1.44781306667579,0,2.50685348535854,0,0,0,0,0.508189248444927,11.712586847186,2.31986643833309,2.84777651068393,5.10351001322531,0,0,0,0.36807447515742,0,0,2.07970861530807,0.535286966391485,0,0.35142424497814,0,0,0,0,0,0,0,0.343143423810856,0,0,0,0,0,0,0,0,0.280660094433074,0,0,0,0,0,0,0.0821271560138091,0,0,0,0.200506470303285,0,0,0,0.131124414959424,0,0.15403067420883,0,0,0,0,0.340187410553031,2.37507507712353,0,0,0,0,0,0,0,0,0.512900250232778,0,0,1.64865618636356,0,0,0.574265537996172,1.30012049207304,0,0.580024309752732,0.154048617114644,0.15350367472613,0,0.107420244868274,0,0,1.06838442776085,0,0,0.127612712494584,0.10115778085555,0.464845549297286,0.62962469366128,0,0.924100740528266,0.532306030317022,0,0.55597265731176,0.429374660225974,0.744316738719335,0.632758849437452,0.190630193923825,0,0,0.318203247925937,0.78494864019923,0,0,0,0.404364963146632,0,0.842516912477962,0,0,0,1.36499911407986,0,0,0,2.65375590096488,1.75380354101505,0,0,0.608731130888112,0,0,0,0,0.7133421029625,0.354761064070598,0.633322905892992,0.329294892959902,0,0,0,0,0,1.22386941009813,0,0,0,0,0,0,0,0,0,0,0,0,1.06824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.79049075631364,0,0,0,0,0,0,0.994147647766298,3.09472716103128,0.111308705022906,0,0,0.796991953004279,0.276283915531148,0,0.102268682502155,0,0.933118762985422,0,0.179021174675609,0,0.197286811273867,0,0,0,0.463840490809256,0,0,0,6.52499617891314,0.455173793141999,0,0,0,0.291604613383254,0,0.885741385813839,1.08536794762867,0,0,0,1.53569778007781,0.980446171670911,0.139423744278603,2.30850775511391,1.13942055847001,0,0,0,0.31900115973192,0.457987967009312,0.533034776018635,0,0,0.166211681900156,0.902382642468723,0.588187602953219,0.671286347903371,0.37950746544837,0,0,0,0,0,0,0.884575645033392,0,0,0,0,0.539209063845416,4.01288823649394,0.234264445725339,0,0,0,0.394584402849391,0,1.53036380815245,2.40109002588254,0.150323419414493,0,0,0,0,0,0,0,0,0.391969589657511,0,0.17472666824203,0,0,0.365446585430928,0.0821154570532092,1.93978032976839,0,1.12990370390266,0,0,1.07628353124994,0,0.400794101257669,0.640358984218058,5.39485945871752,0,0.458146384663663,0,0,0,0.707082103850386,0,0.104602846312333,0,0,0.600420288709789,0.547621515567972,0,1.28929632425987,0,6.42349522926185,5.49985017628041,5.74298419661451,0.399358000997982,4.29226048136571,5.35611497860494,3.22480667936286,0,0,1.73323001075892,1.483485450861,1.75249214020881,0,0,0.795229689809303,1.0896272488926,0,0.137539436597234,0,0.2249738915515,0,1.09349201984444,0.335434687599266,0.394028536495991,0.104909176269996,0,0,0,5.71756261098694,6.62091970365432,0,0,0.864221491201268,0.326587360109409,0,0,0,0,1.02586563574658,0,0.258565912723101,0.39669780522807,0,0,1.06787412567695,0.943225830597996,0.828478110694391,0,0,0,0,16.3205341010842,25.5703691903154,23.2822638340231,36.0659893780785,0,0,0.732157589411779,0.250381861413,2.86704597845036,1.10929051536852,0.496771223531068,3.18201860353331,0.999843263696853,0,0,0,0,0,0,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| ||
|short_description=p4@PALMD | |||
}} | }} |
Latest revision as of 03:11, 25 September 2015
Short description: | p4@PALMD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_PALMD_5end |
Coexpression cluster: | C29_mature_adipose_Adipocyte_breast_Lymphatic_vein_heart |
Association with transcript: | 278bp_to_ENST00000263174_5end |
EntrezGene: | PALMD |
HGNC: | 15846 |
UniProt: | Q9NP74 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 7.08e-25 | 24 |
blood vessel endothelial cell | 1.26e-18 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.26e-18 | 18 |
endothelial cell | 6.52e-18 | 36 |
meso-epithelial cell | 2.83e-14 | 45 |
endothelial cell of artery | 1.21e-11 | 9 |
lining cell | 1.11e-08 | 58 |
barrier cell | 1.11e-08 | 58 |
lymphangioblast | 8.26e-08 | 6 |
endothelial cell of lymphatic vessel | 8.26e-08 | 6 |
vascular lymphangioblast | 8.26e-08 | 6 |
aortic endothelial cell | 1.17e-07 | 6 |
fat cell | 9.14e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 1.26e-18 | 18 |
endothelium | 1.26e-18 | 18 |
cardiovascular system endothelium | 1.26e-18 | 18 |
simple squamous epithelium | 1.99e-14 | 22 |
vessel | 1.87e-13 | 68 |
squamous epithelium | 3.54e-12 | 25 |
anatomical conduit | 4.06e-12 | 240 |
adult organism | 8.64e-12 | 114 |
endothelial tube | 1.21e-11 | 9 |
arterial system endothelium | 1.21e-11 | 9 |
endothelium of artery | 1.21e-11 | 9 |
vasculature | 1.47e-11 | 78 |
vascular system | 1.47e-11 | 78 |
circulatory system | 2.10e-11 | 112 |
splanchnic layer of lateral plate mesoderm | 6.88e-11 | 83 |
epithelial tube open at both ends | 2.82e-10 | 59 |
blood vessel | 2.82e-10 | 59 |
blood vasculature | 2.82e-10 | 59 |
vascular cord | 2.82e-10 | 59 |
cardiovascular system | 3.41e-10 | 109 |
tube | 4.93e-10 | 192 |
epithelial tube | 1.19e-09 | 117 |
epithelium | 9.63e-07 | 306 |