FFCP PHASE1:Hg19::chr3:47823298..47823423,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:47823298..47823423,- to FFCP PHASE1:Hg19::chr3:47823298..47823423,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6599 | |EntrezGene=6599 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11104 | |HGNC=11104 | ||
|TSSclassifier=strong | |||
|UniProt=Q92922,F8WE13,Q58EY4 | |UniProt=Q92922,F8WE13,Q58EY4 | ||
|association_with_transcript=0bp_to_ENST00000254480,ENST00000454240,NM_003074,uc003crq.2_5end | |||
|cluster_id=chr3:47823298..47823423,- | |||
|description=CAGE_peak_1_at_SMARCC1_5end | |||
|id=chr3:47823298..47823423,- | |||
|ontology_enrichment_celltype=CL:0000542!4.66e-08!53;CL:0000051!4.66e-08!53;CL:0000838!1.27e-07!52 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,4.66e-08,53;CL:0000051,4.66e-08,53;CL:0000838,1.27e-07,52 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!9.72e-23!235;DOID:14566!4.68e-21!239;DOID:2531!1.44e-14!51;DOID:0060083!1.44e-14!51;DOID:0050686!2.67e-14!137;DOID:1240!1.09e-12!39;DOID:3095!1.62e-11!22;DOID:2994!1.62e-11!22;DOID:0050687!2.18e-11!143;DOID:8692!6.06e-10!31;DOID:305!4.49e-08!106 | |||
|ontology_enrichment_disease_v019=DOID:3095;1.53e-11;22!DOID:2994;1.53e-11;22!DOID:1240;2.35e-10;39!DOID:8692;8.93e-10;31!DOID:2531;4.55e-09;51!DOID:0060083;4.55e-09;51 | |||
|ontology_enrichment_disease_v019_2=DOID:162,9.72e-23,235;DOID:14566,4.68e-21,239;DOID:2531,1.44e-14,51;DOID:0060083,1.44e-14,51;DOID:0050686,2.67e-14,137;DOID:1240,1.09e-12,39;DOID:3095,1.62e-11,22;DOID:2994,1.62e-11,22;DOID:0050687,2.18e-11,143;DOID:8692,6.06e-10,31;DOID:305,4.49e-08,106 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| ||
|short_description=p1@SMARCC1 | |||
}} | }} |
Latest revision as of 12:52, 18 September 2015
Short description: | p1@SMARCC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SMARCC1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000254480, ENST00000454240, NM_003074, uc003crq.2_5end |
EntrezGene: | SMARCC1 |
HGNC: | 11104 |
UniProt: | Q92922F8WE13Q58EY4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 4.66e-08 | 53 |
common lymphoid progenitor | 4.66e-08 | 53 |
lymphoid lineage restricted progenitor cell | 1.27e-07 | 52 |
Ontology term | p-value | n |
---|---|---|
cancer | 9.72e-23 | 235 |
disease of cellular proliferation | 4.68e-21 | 239 |
hematologic cancer | 1.44e-14 | 51 |
immune system cancer | 1.44e-14 | 51 |
organ system cancer | 2.67e-14 | 137 |
leukemia | 1.09e-12 | 39 |
germ cell and embryonal cancer | 1.62e-11 | 22 |
germ cell cancer | 1.62e-11 | 22 |
cell type cancer | 2.18e-11 | 143 |
myeloid leukemia | 6.06e-10 | 31 |
carcinoma | 4.49e-08 | 106 |