FFCP PHASE1:Hg19::chr4:79697168..79697226,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr4:79697168..79697226,+ to FFCP PHASE1:Hg19::chr4:79697168..79697226,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55589 | |EntrezGene=55589 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18041 | |HGNC=18041 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-269bp_to_ENST00000389010_5end | |||
|cluster_id=chr4:79697168..79697226,+ | |||
|description=CAGE_peak_3_at_BMP2K_5end | |||
|id=chr4:79697168..79697226,+ | |||
|ontology_enrichment_celltype=CL:0000763!1.87e-11!112;CL:0000049!1.87e-11!112;CL:0000037!7.05e-10!172;CL:0000566!7.05e-10!172;CL:0002032!1.11e-09!165;CL:0000837!1.11e-09!165;CL:0000988!2.10e-08!182;CL:0000839!1.21e-07!70;CL:0000557!3.06e-07!71 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000763,3.68e-11,108;CL:0000049,3.68e-11,108;CL:0002032,1.25e-10,161;CL:0000837,1.25e-10,161;CL:0000037,1.66e-10,168;CL:0000988,4.04e-09,177;CL:0000839,3.84e-07,66 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2531!1.43e-10!51;DOID:0060083!1.43e-10!51;DOID:1240!5.31e-08!39;DOID:8692!1.25e-07!31 | |||
|ontology_enrichment_disease_v019=DOID:8692;8.31e-07;31 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,4.55e-10,51;DOID:0060083,4.55e-10,51;DOID:1240,9.21e-08,39;DOID:8692,1.89e-07,31 | |||
|ontology_enrichment_uberon=UBERON:0001017!2.71e-09!82;UBERON:0000073!7.09e-09!94;UBERON:0001016!7.09e-09!94;UBERON:0005743!1.38e-08!86;UBERON:0001049!3.37e-08!57;UBERON:0005068!3.37e-08!57;UBERON:0006241!3.37e-08!57;UBERON:0007135!3.37e-08!57;UBERON:0001893!3.41e-08!34;UBERON:0002780!5.64e-08!41;UBERON:0001890!5.64e-08!41;UBERON:0006240!5.64e-08!41;UBERON:0002791!9.70e-08!33;UBERON:0000955!1.23e-07!69;UBERON:0006238!1.23e-07!69;UBERON:0002616!1.25e-07!59;UBERON:0002020!1.34e-07!34;UBERON:0003528!1.34e-07!34;UBERON:0001869!2.23e-07!32;UBERON:0003080!2.77e-07!42;UBERON:0001474!7.35e-07!86;UBERON:0003075!7.97e-07!86;UBERON:0007284!7.97e-07!86 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.02e-10,89;UBERON:0001017,4.77e-10,81;UBERON:0000073,7.62e-10,53;UBERON:0002616,7.62e-10,53;UBERON:0001049,3.25e-09,56;UBERON:0005068,3.25e-09,56;UBERON:0006241,3.25e-09,56;UBERON:0007135,3.25e-09,56;UBERON:0001893,4.68e-09,34;UBERON:0002780,1.10e-08,41;UBERON:0001890,1.10e-08,41;UBERON:0003080,1.10e-08,41;UBERON:0006240,1.10e-08,41;UBERON:0003528,2.21e-08,34;UBERON:0002020,2.21e-08,34;UBERON:0000955,2.23e-08,68;UBERON:0006238,2.23e-08,68;UBERON:0001869,4.00e-08,32;UBERON:0002791,5.25e-08,32 | |||
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| ||
|short_description=p3@BMP2K | |||
}} | }} |
Latest revision as of 20:48, 18 September 2015
Short description: | p3@BMP2K |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_BMP2K_5end |
Coexpression cluster: | NA |
Association with transcript: | -269bp_to_ENST00000389010_5end |
EntrezGene: | BMP2K |
HGNC: | 18041 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid cell | 3.68e-11 | 108 |
common myeloid progenitor | 3.68e-11 | 108 |
hematopoietic oligopotent progenitor cell | 1.25e-10 | 161 |
hematopoietic multipotent progenitor cell | 1.25e-10 | 161 |
hematopoietic stem cell | 1.66e-10 | 168 |
hematopoietic cell | 4.04e-09 | 177 |
myeloid lineage restricted progenitor cell | 3.84e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.02e-10 | 89 |
central nervous system | 4.77e-10 | 81 |
regional part of nervous system | 7.62e-10 | 53 |
regional part of brain | 7.62e-10 | 53 |
neural tube | 3.25e-09 | 56 |
neural rod | 3.25e-09 | 56 |
future spinal cord | 3.25e-09 | 56 |
neural keel | 3.25e-09 | 56 |
telencephalon | 4.68e-09 | 34 |
regional part of forebrain | 1.10e-08 | 41 |
forebrain | 1.10e-08 | 41 |
anterior neural tube | 1.10e-08 | 41 |
future forebrain | 1.10e-08 | 41 |
brain grey matter | 2.21e-08 | 34 |
gray matter | 2.21e-08 | 34 |
brain | 2.23e-08 | 68 |
future brain | 2.23e-08 | 68 |
cerebral hemisphere | 4.00e-08 | 32 |
regional part of telencephalon | 5.25e-08 | 32 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 4.55e-10 | 51 |
immune system cancer | 4.55e-10 | 51 |
leukemia | 9.21e-08 | 39 |
myeloid leukemia | 1.89e-07 | 31 |