FFCP PHASE1:Hg19::chr5:59063937..59063954,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:59063937..59063954,+ to FFCP PHASE1:Hg19::chr5:59063937..59063954,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr5:59063937..59063954,+ | |||
|coexpression_cluster_id=C831 | |||
|description=CAGE_peak_at_chr5:59063937..59063954,+ | |||
|id=chr5:59063937..59063954,+ | |||
|ontology_enrichment_celltype=CL:0000066!3.20e-23!254;CL:0002076!1.94e-19!43;CL:0000223!1.07e-13!59;CL:0002251!6.06e-13!21;CL:0002368!2.12e-12!13;CL:0002202!2.25e-08!9;CL:0002632!2.25e-08!9;CL:0002623!3.69e-08!3;CL:0002150!6.93e-08!3;CL:0000861!6.93e-08!3;CL:0000068!1.46e-07!3;CL:0000069!1.46e-07!3;CL:0000307!1.46e-07!3;CL:0000377!1.46e-07!3;CL:0002328!4.07e-07!3;CL:0002621!5.12e-07!3;CL:0002159!9.95e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0002623;4.06e-34;3!CL:0000622;9.22e-21;5!CL:0002251;1.48e-19;20!CL:0002076;1.27e-17;42!CL:0000154;2.06e-17;6!CL:0000307;3.55e-16;3!CL:0002252;2.60e-12;1!CL:0000150;8.29e-12;9!CL:0002368;1.88e-08;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0002623,2.75e-34,3;CL:0002076,3.27e-25,42;CL:0000622,7.30e-21,5;CL:0002251,1.26e-19,20;CL:0000223,6.55e-18,58;CL:0000154,1.70e-17,6;CL:0000068,3.98e-16,3;CL:0000069,3.98e-16,3;CL:0000307,3.98e-16,3;CL:0000377,3.98e-16,3;CL:0002252,2.75e-12,1;CL:0000150,7.29e-12,9;CL:0000066,1.89e-10,253;CL:0002368,1.98e-08,13 | |||
|ontology_enrichment_development_v019=CL:0000377;3.55e-16;3!CL:0000223;6.07e-12;58!UBERON:0008814;8.76e-07;2!UBERON:0010056;8.76e-07;2 | |||
|ontology_enrichment_disease=DOID:305!1.88e-07!106;DOID:4362!6.79e-07!5 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001004!3.21e-27!72;UBERON:0000065!4.28e-20!53;UBERON:0000072!3.56e-18!46;UBERON:0004119!1.23e-17!169;UBERON:0000925!1.23e-17!169;UBERON:0006595!1.23e-17!169;UBERON:0001557!2.31e-16!19;UBERON:0001737!2.70e-15!9;UBERON:0000166!8.51e-15!21;UBERON:0008947!8.18e-14!38;UBERON:0003258!8.18e-14!38;UBERON:0000161!1.39e-13!35;UBERON:0001007!3.46e-13!155;UBERON:0001555!3.46e-13!155;UBERON:0007026!3.46e-13!155;UBERON:0001444!2.77e-12!48;UBERON:0000165!6.77e-12!28;UBERON:0000930!6.77e-12!28;UBERON:0003729!3.25e-11!5;UBERON:0001041!3.54e-11!98;UBERON:0000063!4.07e-11!97;UBERON:0000077!5.50e-11!130;UBERON:0004921!2.63e-10!129;UBERON:0004185!2.63e-10!129;UBERON:0003343!1.09e-09!4;UBERON:0004785!1.09e-09!4;UBERON:0000064!1.65e-09!219;UBERON:0007196!1.76e-08!14;UBERON:0001558!1.76e-08!14;UBERON:0000002!2.19e-08!6;UBERON:0001560!2.19e-08!6;UBERON:0000344!6.05e-08!12;UBERON:0000923!1.21e-07!604;UBERON:0005291!1.21e-07!604;UBERON:0006598!1.21e-07!604;UBERON:0002532!1.21e-07!604;UBERON:0002050!1.35e-07!605;UBERON:0005423!1.35e-07!605;UBERON:0000365!1.48e-07!5;UBERON:0003126!1.98e-07!7;UBERON:0001005!1.98e-07!7;UBERON:0000974!2.19e-07!10;UBERON:0000922!2.90e-07!612;UBERON:0003102!3.60e-07!95;UBERON:0004815!4.07e-07!3;UBERON:0002031!4.07e-07!3;UBERON:0001723!4.52e-07!3;UBERON:0001033!4.52e-07!3;UBERON:0010056!4.52e-07!3;UBERON:0001949!5.12e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0001044;2.06e-17;6!UBERON:0003293;2.06e-17;6!UBERON:0003294;2.06e-17;6!UBERON:0010047;2.06e-17;6!UBERON:0003408;2.06e-17;6!UBERON:0000167;2.06e-17;6!UBERON:0000161;1.52e-14;19!UBERON:0000166;1.52e-14;19!UBERON:0001041;5.43e-13;14!UBERON:0001004;3.12e-12;65!UBERON:0003343;6.37e-12;4!UBERON:0004785;6.37e-12;4!UBERON:0001737;1.49e-11;9!UBERON:0001557;1.49e-11;9!UBERON:0000165;7.61e-10;28!UBERON:0000065;1.11e-08;44!UBERON:0000974;3.02e-08;6!UBERON:0003126;1.93e-07;7!UBERON:0001005;1.93e-07;7!UBERON:0000072;3.81e-07;37 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001044,1.70e-17,6;UBERON:0003293,1.70e-17,6;UBERON:0003294,1.70e-17,6;UBERON:0010047,1.70e-17,6;UBERON:0000167,1.70e-17,6;UBERON:0001004,1.17e-16,74;UBERON:0000166,1.30e-12,22;UBERON:0003343,5.70e-12,4;UBERON:0004785,5.70e-12,4;UBERON:0001737,1.69e-11,9;UBERON:0001041,2.09e-11,87;UBERON:0000161,8.94e-11,36;UBERON:0003408,9.87e-11,10;UBERON:0004119,8.41e-10,160;UBERON:0000925,8.41e-10,160;UBERON:0006595,8.41e-10,160;UBERON:0004921,9.72e-10,118;UBERON:0000165,1.52e-09,29;UBERON:0000930,1.52e-09,29;UBERON:0001557,2.05e-09,19;UBERON:0000065,2.08e-09,54;UBERON:0001007,3.13e-09,145;UBERON:0001555,3.13e-09,145;UBERON:0007026,3.13e-09,145;UBERON:0000072,4.38e-08,47;UBERON:0003126,2.02e-07,7;UBERON:0001005,2.02e-07,7;UBERON:0008947,3.32e-07,38;UBERON:0003258,3.32e-07,38 | |||
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| ||
|short_description=p@chr5:59063937..59063954,+ | |||
}} | }} |
Latest revision as of 15:32, 30 July 2015
Short description: | p@chr5:59063937..59063954, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:59063937..59063954, + |
Coexpression cluster: | C831_glassy_bile_Hep2_cervical_prostate_lung_epitheloid |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
acinar cell of salivary gland | 2.75e-34 | 3 |
endo-epithelial cell | 3.27e-25 | 42 |
acinar cell | 7.30e-21 | 5 |
epithelial cell of alimentary canal | 1.26e-19 | 20 |
endodermal cell | 6.55e-18 | 58 |
protein secreting cell | 1.70e-17 | 6 |
duct epithelial cell | 3.98e-16 | 3 |
branched duct epithelial cell | 3.98e-16 | 3 |
tracheal epithelial cell | 3.98e-16 | 3 |
tracheoblast | 3.98e-16 | 3 |
epithelial cell of esophagus | 2.75e-12 | 1 |
glandular epithelial cell | 7.29e-12 | 9 |
epithelial cell | 1.89e-10 | 253 |
respiratory epithelial cell | 1.98e-08 | 13 |
Ontology term | p-value | n |
---|---|---|
saliva-secreting gland | 1.70e-17 | 6 |
gland of oral region | 1.70e-17 | 6 |
gland of foregut | 1.70e-17 | 6 |
oral gland | 1.70e-17 | 6 |
oral cavity | 1.70e-17 | 6 |
respiratory system | 1.17e-16 | 74 |
oral opening | 1.30e-12 | 22 |
mucosa of oral region | 5.70e-12 | 4 |
respiratory system mucosa | 5.70e-12 | 4 |
larynx | 1.69e-11 | 9 |
foregut | 2.09e-11 | 87 |
orifice | 8.94e-11 | 36 |
gland of gut | 9.87e-11 | 10 |
endoderm-derived structure | 8.41e-10 | 160 |
endoderm | 8.41e-10 | 160 |
presumptive endoderm | 8.41e-10 | 160 |
subdivision of digestive tract | 9.72e-10 | 118 |
mouth | 1.52e-09 | 29 |
stomodeum | 1.52e-09 | 29 |
upper respiratory tract | 2.05e-09 | 19 |
respiratory tract | 2.08e-09 | 54 |
digestive system | 3.13e-09 | 145 |
digestive tract | 3.13e-09 | 145 |
primitive gut | 3.13e-09 | 145 |
segment of respiratory tract | 4.38e-08 | 47 |
trachea | 2.02e-07 | 7 |
respiratory airway | 2.02e-07 | 7 |
respiratory primordium | 3.32e-07 | 38 |
endoderm of foregut | 3.32e-07 | 38 |