FFCP PHASE1:Hg19::chr5:82789361..82789380,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:82789361..82789380,+ to FFCP PHASE1:Hg19::chr5:82789361..82789380,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1462 | |EntrezGene=1462 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=2464 | |HGNC=2464 | ||
|TSSclassifier=strong | |||
|UniProt=B7Z638 | |UniProt=B7Z638 | ||
|association_with_transcript=-348bp_to_AK299770_5end | |||
|cluster_id=chr5:82789361..82789380,+ | |||
|coexpression_cluster_id=C456 | |||
|description=CAGE_peak_13_at_VCAN_5end | |||
|id=chr5:82789361..82789380,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.04e-28!42;CL:0000860!1.79e-25!45;CL:0002194!1.02e-14!63;CL:0000576!1.02e-14!63;CL:0000040!1.02e-14!63;CL:0000559!1.02e-14!63;CL:0002009!9.57e-14!65;CL:0000839!1.34e-11!70;CL:0000048!2.51e-11!430;CL:0000557!3.26e-11!71;CL:0000034!4.34e-11!444;CL:0000766!1.33e-10!76;CL:0000723!1.74e-10!436;CL:0000055!1.10e-09!180;CL:0000057!7.07e-08!75;CL:0002334!7.67e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.10e-47;33!CL:0002057;4.10e-47;33!CL:0000473;2.41e-32;39!CL:0000234;2.41e-32;39!CL:0000576;8.13e-26;48!CL:0000766;3.99e-13;69!CL:0002334;1.82e-09;12!CL:0000569;1.02e-08;4!CL:1000306;1.78e-08;4!CL:0002547;1.78e-08;4!CL:0000763;7.80e-07;100!CL:0002580;8.07e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,6.23e-49,42;CL:0002057,6.23e-49,42;CL:0000473,1.99e-41,48;CL:0000234,1.99e-41,48;CL:0002194,5.78e-31,59;CL:0000576,5.78e-31,59;CL:0000040,5.78e-31,59;CL:0000559,5.78e-31,59;CL:0002009,1.28e-29,61;CL:0000839,1.29e-26,66;CL:0000557,4.54e-26,67;CL:0000766,1.44e-23,72;CL:0000134,2.42e-13,354;CL:0002320,2.67e-13,361;CL:0000048,4.24e-13,427;CL:0002087,5.27e-13,115;CL:0000723,1.26e-12,433;CL:0000763,1.62e-12,108;CL:0000049,1.62e-12,108;CL:0000034,5.09e-12,441;CL:0000219,1.54e-10,386;CL:0002031,2.28e-10,120;CL:0000738,1.51e-09,136;CL:0002334,3.41e-09,12;CL:0000569,9.58e-09,4;CL:0000011,9.58e-09,4;CL:1000306,1.17e-08,4;CL:0002547,1.17e-08,4 | |||
|ontology_enrichment_development_v019=CL:0002057;5.14e-35;42!CL:0000011;1.02e-08;4 | |||
|ontology_enrichment_disease=DOID:2394!4.01e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;1.01e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.53e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0002204!4.48e-15!167;UBERON:0002371!1.33e-09!80;UBERON:0004765!2.04e-09!101;UBERON:0001434!2.04e-09!101;UBERON:0002390!9.64e-09!102;UBERON:0003061!9.64e-09!102;UBERON:0003081!1.17e-08!216;UBERON:0001474!2.28e-08!86;UBERON:0000468!3.74e-08!659;UBERON:0002193!5.79e-07!112;UBERON:0002384!9.68e-07!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0004797;1.78e-08;4!UBERON:0000415;1.78e-08;4!UBERON:0007240;1.78e-08;4!UBERON:0005742;1.78e-08;4!UBERON:0005734;1.78e-08;4!UBERON:0004664;1.78e-08;4!UBERON:0004663;1.78e-08;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.49e-23,76;UBERON:0001474,9.56e-21,82;UBERON:0002390,9.89e-21,98;UBERON:0003061,9.89e-21,98;UBERON:0004765,3.65e-19,90;UBERON:0002193,8.72e-18,108;UBERON:0001434,2.49e-17,100;UBERON:0002405,4.11e-17,93;UBERON:0000926,1.23e-16,315;UBERON:0004120,1.23e-16,315;UBERON:0006603,1.23e-16,315;UBERON:0002204,1.34e-14,167;UBERON:0003081,1.97e-14,203;UBERON:0002384,9.93e-14,371;UBERON:0000415,1.17e-08,4;UBERON:0007240,1.17e-08,4;UBERON:0005742,1.17e-08,4;UBERON:0005734,1.17e-08,4;UBERON:0004664,1.17e-08,4;UBERON:0004663,1.17e-08,4;UBERON:0004797,5.67e-07,7 | |||
|phase1_expression=0.726713517082227,0.856402095563933,0.845726424575827,0,2.23480547213644,3.48935409640147,0,0,0,0,0.697801167972428,0,0,0.123766352960047,0,0.672325146451775,1.20538905604795,0.730310090387373,0.975865597581014,0,0,0.313454721478088,0.286235987131057,0.410623275218653,0.376627918784408,0,0,0,0.393364276848904,0,0.309632246632152,0,0,0,0,0,0,0.553995408531877,3.60980005446255,2.38711957787437,0,0,0,4.9435401185052,1.13362783106643,1.4555043671269,5.34586784883075,0.411167888021826,0.619412741790207,4.02769349251011,2.81776777182011,4.02019790810595,4.13694816883942,3.22742341791913,1.35426486594342,4.89430082810772,1.63743690034707,1.57306439111559,5.20342617030534,1.60464513538047,1.27867425159808,4.28806690242731,1.99463657621632,1.70489900213078,4.64334781805734,2.26954089876456,1.86846674698672,6.28121663141858,1.5644487552606,3.69221035998698,1.81619850790011,1.10483290796269,2.53169909952708,1.05627643155971,0.637812899895131,0.628975936525128,3.14520167210186,4.95583746376971,5.14321877430656,0.285012743741249,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.950452044448374,0,0.127986611154418,0,0,0,0,0,0,2.43806866313962,0,0.12786256184353,0.361439152384566,0.50133791063589,0.434539556882471,0,0.486634870302636,0.378139268656271,1.33037638477538,1.58102614247627,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.98788780678127,1.64619665163954,1.45650098894541,8.3182620017156,2.12801029319014,0,0,0.74000264525148,0.311211035399766,1.34710672069688,1.14423332179421,0,0,0,0,0,0,0.117434498643765,0.161872944368132,0,0.204154171254893,0,0.206651562351531,0,1.23633464639278,0,0,0,0.375355559615893,0,0.438977620880838,0.612975591598039,0.901428353439581,0.113432183160021,0.89694817844431,0.85422955527427,0.211931901159562,0.300091096084402,0.412210116953756,0.257640540045629,0.18611685633159,1.35021065793013,0.876933046450788,0.252433774244115,0.0920498986422993,0.484938170456436,0.355009592516614,0.302256294682921,0,0,0,0,0.243947412259191,0.397589304964456,0.348581828608555,0.932949495138334,0.252320850875628,0,0,1.28648187638577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343135620597051,0,0,0,0,0,0,0,0,1.52631302506568,0,0,0,0,0,0.246217006087397,0,0,0,0.671928512795438,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0,0.517086863031111,0,0,0.26593811658487,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0.099972991182057,0,0,0,0,0,2.85273810081437,0.289562613335158,0.205476322550383,0.179060963239896,0,0,0,0.385029108839245,0.254094624222463,0,0.773288812777695,0,1.27587750330633,0,0,0,0.49076596687656,1.00034104211935,0,1.24782516918484,1.60586089917446,0.630809660135739,0.585707074963566,0,0,0,0,0.184369168541703,0.173767228936166,0,0.343143423810856,0.413536052245775,2.5885704098234,1.06727557803444,0,0,0,1.24053903909388,2.14846762603287,3.08726103876381,1.40953064181271,1.02341449813341,2.57366273829772,0,1.23367755042124,0.177561725313127,0.410635780069046,4.67328986265259,0.697262270759755,0.120859449591622,0.40101294060657,0.0920809889358963,0.34444334449382,0.364182336013434,0,0,0.0770153371044148,0,1.46139224653261,0.422206515571503,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0.154048617114644,1.38153307253517,0.689182862422653,0.214840489736547,0.725083469571143,0.255679882248303,0.445160178233687,0.165284915360978,0.384380134730212,0.127612712494584,0,0,5.03699754929024,0,0.308033580176089,0.532306030317022,0,0.37064843820784,0.715624433709956,0,0,0.762520775695299,0,0.42793898803392,0.318203247925937,0,0.539617372749944,1.09814811894422,0.589062011728432,0.404364963146632,0,0,0,0.731140468893853,0,0,0.141405431953713,0,0,0,2.63070531152258,0,0,0,0.6196469961995,0.563391205064483,0,0.0982490410131212,0.35667105148125,0.354761064070598,1.26664581178598,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0.569647187174163,0,0,0.648473311192717,0,1.58625035258854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.447352215784832,0.166849141711909,0,0,0,0,0,0,0,0.439524537815682,0,0.111443384277478,0,0,0,0,0,0,0,0.988823245360557,0,0.996239941255349,0,0,0,0,1.24415835064723,0,0,0,0,4.7896618469388,0,0.969332746095218,0.185536196323703,0,0.260427761085233,0,0,0,0,0,0,0,1.38899995946634,0,0,0,0.221158519862449,0.886642856860642,0,0,0,0.0769502585037971,0.227884111694002,0,0,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0.489698424477443,0,0,0,0,0,0,0,0,0.067401132980677,1.60515529459758,0,0,0,0,0.789168805698781,1.20990716048664,0,0.379119477770928,0,0.103688191397247,0,0,0,0,0,0,0,0,0,0.52418000472609,0,0,0,0,0,0,0,0.137041924646751,0,0.0633107959558787,0,0,0,0,0,0,0,0.288109595976299,0,0,0,0,0,0,0,0.136905378891993,0,0.859530882839914,0,1.11712960508902,0.229160424011684,0,0.199679000498991,0,0.223171457441873,0.201550417460179,0,0,0,0,0,0,0,0,0.408610218334727,0.964518890790115,0.412618309791701,3.32352270423348,0,0,0,0,0,0.209818352539992,0,0,0,0.714695326373367,0,0,0,0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| ||
|short_description=p13@VCAN | |||
}} | }} |
Latest revision as of 00:46, 19 September 2015
Short description: | p13@VCAN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_VCAN_5end |
Coexpression cluster: | C456_Fibroblast_Smooth_CD14_Preadipocyte_Lens_mesenchymal_serous |
Association with transcript: | -348bp_to_AK299770_5end |
EntrezGene: | VCAN |
HGNC: | 2464 |
UniProt: | B7Z638 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 6.23e-49 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.23e-49 | 42 |
defensive cell | 1.99e-41 | 48 |
phagocyte | 1.99e-41 | 48 |
monopoietic cell | 5.78e-31 | 59 |
monocyte | 5.78e-31 | 59 |
monoblast | 5.78e-31 | 59 |
promonocyte | 5.78e-31 | 59 |
macrophage dendritic cell progenitor | 1.28e-29 | 61 |
myeloid lineage restricted progenitor cell | 1.29e-26 | 66 |
granulocyte monocyte progenitor cell | 4.54e-26 | 67 |
myeloid leukocyte | 1.44e-23 | 72 |
mesenchymal cell | 2.42e-13 | 354 |
connective tissue cell | 2.67e-13 | 361 |
multi fate stem cell | 4.24e-13 | 427 |
nongranular leukocyte | 5.27e-13 | 115 |
somatic stem cell | 1.26e-12 | 433 |
myeloid cell | 1.62e-12 | 108 |
common myeloid progenitor | 1.62e-12 | 108 |
stem cell | 5.09e-12 | 441 |
motile cell | 1.54e-10 | 386 |
hematopoietic lineage restricted progenitor cell | 2.28e-10 | 120 |
leukocyte | 1.51e-09 | 136 |
preadipocyte | 3.41e-09 | 12 |
cardiac mesenchymal cell | 9.58e-09 | 4 |
migratory trunk neural crest cell | 9.58e-09 | 4 |
fibroblast of tunica adventitia of artery | 1.17e-08 | 4 |
fibroblast of the aortic adventitia | 1.17e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.49e-23 | 76 |
bone element | 9.56e-21 | 82 |
hematopoietic system | 9.89e-21 | 98 |
blood island | 9.89e-21 | 98 |
skeletal element | 3.65e-19 | 90 |
hemolymphoid system | 8.72e-18 | 108 |
skeletal system | 2.49e-17 | 100 |
immune system | 4.11e-17 | 93 |
mesoderm | 1.23e-16 | 315 |
mesoderm-derived structure | 1.23e-16 | 315 |
presumptive mesoderm | 1.23e-16 | 315 |
musculoskeletal system | 1.34e-14 | 167 |
lateral plate mesoderm | 1.97e-14 | 203 |
connective tissue | 9.93e-14 | 371 |
artery wall | 1.17e-08 | 4 |
tunica adventitia of artery | 1.17e-08 | 4 |
adventitia | 1.17e-08 | 4 |
tunica adventitia of blood vessel | 1.17e-08 | 4 |
aorta tunica adventitia | 1.17e-08 | 4 |
aorta wall | 1.17e-08 | 4 |
blood vessel layer | 5.67e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.53e-07 | 14 |