FFCP PHASE1:Hg19::chr6:138744950..138744953,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr6:138744950..138744953,- to FFCP PHASE1:Hg19::chr6:138744950..138744953,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=57224 | |EntrezGene=57224 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=21021 | |HGNC=21021 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-70bp_to_BC020940_5end | |||
|cluster_id=chr6:138744950..138744953,- | |||
|description=CAGE_peak_4_at_NHSL1_5end | |||
|id=chr6:138744950..138744953,- | |||
|ontology_enrichment_celltype=CL:0000220!1.88e-20!246;CL:0002321!2.62e-20!248;CL:0000066!6.69e-19!254;CL:0002078!1.69e-11!44;CL:0000115!3.47e-10!35;CL:0000213!1.44e-08!57;CL:0000215!1.44e-08!57;CL:0002139!6.91e-08!24;CL:0000222!7.32e-08!119;CL:0000223!8.87e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000115;1.08e-09;36!CL:0002078;1.95e-09;45!CL:0002139;9.96e-09;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,2.27e-19,250;CL:0000066,5.72e-15,253;CL:0002078,8.51e-13,45;CL:0000115,1.40e-11,36;CL:0002139,7.84e-09,24;CL:0000213,1.19e-08,58;CL:0000215,1.19e-08,58;CL:0000222,1.54e-07,121;CL:0000221,9.36e-07,72 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!1.48e-19!312;UBERON:0000483!1.64e-18!309;UBERON:0000481!4.82e-14!347;UBERON:0000468!3.53e-13!659;UBERON:0000922!2.71e-12!612;UBERON:0000467!3.66e-12!625;UBERON:0000477!5.47e-12!286;UBERON:0000480!6.94e-12!626;UBERON:0002050!7.36e-12!605;UBERON:0005423!7.36e-12!605;UBERON:0000923!1.34e-11!604;UBERON:0005291!1.34e-11!604;UBERON:0006598!1.34e-11!604;UBERON:0002532!1.34e-11!604;UBERON:0000025!4.79e-11!194;UBERON:0004111!5.84e-11!241;UBERON:0000475!1.70e-09!365;UBERON:0000064!3.34e-09!219;UBERON:0001048!3.25e-08!168;UBERON:0003075!3.56e-08!86;UBERON:0007284!3.56e-08!86;UBERON:0004121!3.93e-08!169;UBERON:0003914!6.63e-08!118;UBERON:0000924!1.23e-07!173;UBERON:0006601!1.23e-07!173;UBERON:0002049!1.53e-07!79;UBERON:0007798!1.53e-07!79;UBERON:0000063!1.93e-07!97;UBERON:0002346!2.02e-07!90 | |||
|ontology_enrichment_uberon_v019=UBERON:0000970;1.10e-07;20!UBERON:0002104;1.41e-07;21!UBERON:0001456;1.41e-07;21!UBERON:0000019;1.90e-07;19!UBERON:0000047;1.90e-07;19!UBERON:0004088;1.90e-07;19!UBERON:0010230;1.90e-07;19!UBERON:0000020;8.70e-07;23!UBERON:0001032;9.94e-07;24!UBERON:0004456;9.94e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,3.89e-17,309;UBERON:0000483,4.21e-16,306;UBERON:0010371,3.78e-10,104;UBERON:0000025,7.12e-09,192;UBERON:0003075,2.56e-08,82;UBERON:0007284,2.56e-08,82;UBERON:0004111,2.98e-08,240;UBERON:0011216,1.06e-07,223;UBERON:0002346,1.60e-07,86;UBERON:0002049,6.45e-07,78;UBERON:0007798,6.45e-07,78;UBERON:0001456,7.32e-07,22;UBERON:0000970,7.73e-07,21;UBERON:0002104,7.73e-07,21;UBERON:0004121,8.26e-07,171;UBERON:0000924,8.26e-07,171;UBERON:0006601,8.26e-07,171;UBERON:0006914,8.53e-07,25;UBERON:0000923,9.13e-07,560;UBERON:0010316,9.13e-07,560;UBERON:0005291,9.13e-07,560;UBERON:0006598,9.13e-07,560;UBERON:0010317,9.13e-07,560;UBERON:0002532,9.13e-07,560 | |||
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| ||
|short_description=p4@NHSL1 | |||
}} | }} |
Latest revision as of 04:55, 25 September 2015
Short description: | p4@NHSL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_NHSL1_5end |
Coexpression cluster: | NA |
Association with transcript: | -70bp_to_BC020940_5end |
EntrezGene: | NHSL1 |
HGNC: | 21021 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 2.27e-19 | 250 |
epithelial cell | 5.72e-15 | 253 |
meso-epithelial cell | 8.51e-13 | 45 |
endothelial cell | 1.40e-11 | 36 |
endothelial cell of vascular tree | 7.84e-09 | 24 |
lining cell | 1.19e-08 | 58 |
barrier cell | 1.19e-08 | 58 |
mesodermal cell | 1.54e-07 | 121 |
ectodermal cell | 9.36e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
cell layer | 3.89e-17 | 309 |
epithelium | 4.21e-16 | 306 |
ecto-epithelium | 3.78e-10 | 104 |
tube | 7.12e-09 | 192 |
neural plate | 2.56e-08 | 82 |
presumptive neural plate | 2.56e-08 | 82 |
anatomical conduit | 2.98e-08 | 240 |
organ system subdivision | 1.06e-07 | 223 |
neurectoderm | 1.60e-07 | 86 |
vasculature | 6.45e-07 | 78 |
vascular system | 6.45e-07 | 78 |
face | 7.32e-07 | 22 |
eye | 7.73e-07 | 21 |
visual system | 7.73e-07 | 21 |
ectoderm-derived structure | 8.26e-07 | 171 |
ectoderm | 8.26e-07 | 171 |
presumptive ectoderm | 8.26e-07 | 171 |
squamous epithelium | 8.53e-07 | 25 |
germ layer | 9.13e-07 | 560 |
germ layer / neural crest | 9.13e-07 | 560 |
embryonic tissue | 9.13e-07 | 560 |
presumptive structure | 9.13e-07 | 560 |
germ layer / neural crest derived structure | 9.13e-07 | 560 |
epiblast (generic) | 9.13e-07 | 560 |