FFCP PHASE1:Hg19::chr8:134072569..134072583,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr8:134072569..134072583,- to FFCP PHASE1:Hg19::chr8:134072569..134072583,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6503 | |EntrezGene=6503 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10902 | |HGNC=10902 | ||
|TSSclassifier=strong | |||
|UniProt=Q13239 | |UniProt=Q13239 | ||
|association_with_transcript=19bp_to_ENST00000427060,NM_006748,uc011ljd.1_5end | |||
|cluster_id=chr8:134072569..134072583,- | |||
|coexpression_cluster_id=C4729 | |||
|description=CAGE_peak_7_at_SLA_5end | |||
|id=chr8:134072569..134072583,- | |||
|ontology_enrichment_celltype=CL:0000738!1.38e-51!140;CL:0000037!1.80e-51!172;CL:0000566!1.80e-51!172;CL:0000988!1.72e-50!182;CL:0002032!5.75e-48!165;CL:0000837!5.75e-48!165;CL:0002087!6.12e-40!119;CL:0002031!2.29e-39!124;CL:0000542!2.54e-37!53;CL:0000051!2.54e-37!53;CL:0000838!2.33e-36!52;CL:0000084!1.67e-26!25;CL:0000827!1.67e-26!25;CL:0000791!1.14e-19!18;CL:0000789!1.14e-19!18;CL:0002420!1.14e-19!18;CL:0002419!1.14e-19!18;CL:0000790!1.14e-19!18;CL:0000763!1.08e-15!112;CL:0000049!1.08e-15!112;CL:0000625!3.21e-13!11;CL:0000766!3.37e-13!76;CL:0000236!6.74e-13!14;CL:0000945!9.50e-10!24;CL:0000826!9.50e-10!24;CL:0000557!1.41e-09!71;CL:0000839!5.79e-09!70;CL:0000134!1.62e-08!358;CL:0002320!7.52e-08!365;CL:0002009!1.60e-07!65;CL:0002057!1.64e-07!42;CL:0000624!1.97e-07!6;CL:0002194!3.40e-07!63;CL:0000576!3.40e-07!63;CL:0000040!3.40e-07!63;CL:0000559!3.40e-07!63;CL:0000080!4.70e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000084;3.31e-38;25!CL:0000542;3.46e-29;53!CL:0000791;2.37e-27;18!CL:0000789;2.37e-27;18!CL:0002419;2.37e-27;18!CL:0000625;4.79e-20;11!CL:0000236;5.75e-17;13!CL:0000624;7.43e-11;6!CL:0002087;2.58e-10;104!CL:0000945;2.28e-09;24!CL:0000738;3.82e-09;136!CL:0000988;4.15e-09;177!CL:0000094;3.17e-07;8!CL:0000081;9.91e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,6.38e-48,53;CL:0000051,6.38e-48,53;CL:0000838,1.88e-46,52;CL:0000738,1.22e-43,136;CL:0000988,2.04e-42,177;CL:0000037,1.68e-41,168;CL:0000084,3.76e-38,25;CL:0000827,3.76e-38,25;CL:0002032,5.74e-38,161;CL:0000837,5.74e-38,161;CL:0002087,2.67e-34,115;CL:0002031,6.99e-32,120;CL:0000791,2.60e-27,18;CL:0000789,2.60e-27,18;CL:0002420,2.60e-27,18;CL:0002419,2.60e-27,18;CL:0000790,2.60e-27,18;CL:0000625,5.28e-20,11;CL:0000236,1.94e-15,14;CL:0000624,7.45e-11,6;CL:0000134,2.38e-09,354;CL:0000945,2.72e-09,24;CL:0000826,2.72e-09,24;CL:0002320,7.92e-09,361;CL:0000094,1.99e-07,8;CL:0000219,4.95e-07,386;CL:0000081,6.57e-07,11 | |||
|ontology_enrichment_development_v019=CL:0000051;3.46e-29;53!CL:0000790;2.37e-27;18 | |||
|ontology_enrichment_disease=DOID:2531!4.22e-08!51;DOID:0060083!4.22e-08!51 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.73e-21!102;UBERON:0003061!1.73e-21!102;UBERON:0002193!7.20e-20!112;UBERON:0000178!6.45e-16!15;UBERON:0000179!6.45e-16!15;UBERON:0000463!6.45e-16!15;UBERON:0002371!1.51e-08!80;UBERON:0007023!1.71e-08!115;UBERON:0002405!1.51e-07!115;UBERON:0002384!2.76e-07!375;UBERON:0001474!2.89e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.03e-24;15!UBERON:0000179;4.03e-24;15!UBERON:0000463;4.03e-24;15!UBERON:0002390;8.34e-15;32!UBERON:0002193;4.91e-09;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.80e-24,15;UBERON:0000179,2.80e-24,15;UBERON:0000463,2.80e-24,15;UBERON:0002390,1.71e-13,98;UBERON:0003061,1.71e-13,98;UBERON:0002193,3.29e-13,108;UBERON:0002384,4.00e-08,371;UBERON:0004177,5.83e-07,7;UBERON:0005057,5.83e-07,7 | |||
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| ||
|short_description=p7@SLA | |||
}} | }} |
Latest revision as of 15:04, 16 September 2015
Short description: | p7@SLA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_SLA_5end |
Coexpression cluster: | C4729_Hodgkin_thymus_chronic_hairy_acute_CD8_immature |
Association with transcript: | 19bp_to_ENST00000427060, NM_006748, uc011ljd.1_5end |
EntrezGene: | SLA |
HGNC: | 10902 |
UniProt: | Q13239 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 6.38e-48 | 53 |
common lymphoid progenitor | 6.38e-48 | 53 |
lymphoid lineage restricted progenitor cell | 1.88e-46 | 52 |
leukocyte | 1.22e-43 | 136 |
hematopoietic cell | 2.04e-42 | 177 |
hematopoietic stem cell | 1.68e-41 | 168 |
T cell | 3.76e-38 | 25 |
pro-T cell | 3.76e-38 | 25 |
hematopoietic oligopotent progenitor cell | 5.74e-38 | 161 |
hematopoietic multipotent progenitor cell | 5.74e-38 | 161 |
nongranular leukocyte | 2.67e-34 | 115 |
hematopoietic lineage restricted progenitor cell | 6.99e-32 | 120 |
mature alpha-beta T cell | 2.60e-27 | 18 |
alpha-beta T cell | 2.60e-27 | 18 |
immature T cell | 2.60e-27 | 18 |
mature T cell | 2.60e-27 | 18 |
immature alpha-beta T cell | 2.60e-27 | 18 |
CD8-positive, alpha-beta T cell | 5.28e-20 | 11 |
B cell | 1.94e-15 | 14 |
CD4-positive, alpha-beta T cell | 7.45e-11 | 6 |
mesenchymal cell | 2.38e-09 | 354 |
lymphocyte of B lineage | 2.72e-09 | 24 |
pro-B cell | 2.72e-09 | 24 |
connective tissue cell | 7.92e-09 | 361 |
granulocyte | 1.99e-07 | 8 |
motile cell | 4.95e-07 | 386 |
blood cell | 6.57e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
blood | 2.80e-24 | 15 |
haemolymphatic fluid | 2.80e-24 | 15 |
organism substance | 2.80e-24 | 15 |
hematopoietic system | 1.71e-13 | 98 |
blood island | 1.71e-13 | 98 |
hemolymphoid system | 3.29e-13 | 108 |
connective tissue | 4.00e-08 | 371 |
hemopoietic organ | 5.83e-07 | 7 |
immune organ | 5.83e-07 | 7 |