FFCP PHASE1:Hg19::chr9:124088907..124088937,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr9:124088907..124088937,+ to FFCP PHASE1:Hg19::chr9:124088907..124088937,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2934 | |EntrezGene=2934 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4620 | |HGNC=4620 | ||
|TSSclassifier=strong | |||
|UniProt=Q5T0H8 | |UniProt=Q5T0H8 | ||
|association_with_transcript=47bp_to_ENST00000373806_5end | |||
|cluster_id=chr9:124088907..124088937,+ | |||
|coexpression_cluster_id=C106 | |||
|description=CAGE_peak_5_at_GSN_5end | |||
|id=chr9:124088907..124088937,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000349;1.03e-13;19!CL:0002138;2.47e-11;6!CL:0002541;1.97e-07;3!CL:0002537;5.01e-07;5!CL:0002577;5.52e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,1.15e-13,19;CL:0005020,3.43e-11,6;CL:0002138,3.43e-11,6;CL:0005022,3.43e-11,6;CL:0002541,2.23e-07,3;CL:0002577,3.45e-07,3;CL:0002537,7.60e-07,5 | |||
|ontology_enrichment_development_v019=CL:0005022;2.47e-11;6!UBERON:0008947;1.30e-08;29 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!1.98e-12!659;UBERON:0000467!1.17e-11!625;UBERON:0000480!1.70e-11!626;UBERON:0005631!1.32e-09!14;UBERON:0000158!1.32e-09!14;UBERON:0007023!3.28e-09!115;UBERON:0004923!7.02e-09!57;UBERON:0001737!7.33e-09!9;UBERON:0000477!3.40e-08!286;UBERON:0004872!4.51e-07!84;UBERON:0003124!9.73e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;2.10e-20;9!UBERON:0001557;2.10e-20;9!UBERON:0005631;2.92e-16;10!UBERON:0000158;2.92e-16;10!UBERON:0000478;2.65e-14;24!UBERON:0000305;1.25e-10;7!UBERON:0001987;5.10e-09;4!UBERON:0001473;2.69e-08;8!UBERON:0004536;2.69e-08;8!UBERON:0006558;2.69e-08;8!UBERON:0003124;1.97e-07;3!UBERON:0000920;1.97e-07;3!UBERON:0004151;3.21e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.77e-23,14;UBERON:0000158,1.77e-23,14;UBERON:0001737,2.17e-20,9;UBERON:0003124,6.26e-15,7;UBERON:0000478,2.99e-14,24;UBERON:0004923,1.58e-13,66;UBERON:0001557,3.27e-12,19;UBERON:0000305,1.98e-10,7;UBERON:0004797,2.15e-09,7;UBERON:0001987,3.19e-09,4;UBERON:0004340,3.19e-09,4;UBERON:0004871,5.17e-09,8;UBERON:0001473,3.42e-08,8;UBERON:0004536,3.42e-08,8;UBERON:0006558,3.42e-08,8;UBERON:0000920,2.23e-07,3;UBERON:0004151,3.17e-07,3 | |||
|phase1_expression=2.18014055124668,1.2846031433459,1.55049844505568,0,3.5756887554183,2.61701557230111,0,0,0.261185628199839,0,0,3.9319446983431,3.16520373874144,0.618831764800233,0.662794751455832,0,0,0,0.487932798790507,0,0,0.626909442956176,0,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.727752183563449,0,0,0,0.28769239232215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289803085735052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0.434539556882471,0,0.486634870302636,0,0,0,0.261958150995425,0.364295288292542,0.370784442784429,1.29818957461873,0.522389211897802,1.19662164466979,0,0,0,0.79504962946682,0,0.347140501607594,0.56530794192401,0,0.550236083880135,0.835979866147242,1.03366703667732,1.77883131343355,1.33888245105868,1.61131726843659,3.80136052859256,1.46437234528902,0.367663080345869,0,0.446498641420399,0,0.337834441449967,0,0,0.549605231791222,0,0,0.436094052142534,0.496971951695318,2.40597972162702,0.397227542439656,1.72101972449288,1.06400514659507,0.560677600142307,0,0.24666754841716,0,0.134710672069688,0,0,0,0,0.312160076830321,0,0.298897361103602,0,0,0,0,0,0.826606249406124,1.18800285728205,0.247266929278557,0,0,0.336672227908132,0,0,0.438977620880838,1.5324389789951,0.45071417671979,0.113432183160021,0.717558542755448,1.06778694409284,0.635795703478686,0.300091096084402,0.309157587715317,0,0.37223371266318,0.168776332241266,0.68205903612839,0,0.184099797284599,0.646584227275248,0,0.302256294682921,0.508681776931463,0.193260853163297,0.545492241181669,0.286804595389004,0,0.132529768321485,0,0,0,0,0,0.643240938192885,0,0.464367928031979,0,23.1881328078094,25.2877035117153,15.4247059125428,20.1837970100281,21.1343060769634,16.8462139568879,25.7527798585914,24.7239046057936,18.8526106903731,0,0,0,0,0,2.94848165003288,2.95394953340702,0,0.122988438543114,0,0,0,0.100528972411631,0.0925884451585296,0,0,0,0,0,2.02113026865503,2.31492756288305,3.61482889245737,0,0,0.246217006087397,0.468008530278475,0.445893486866185,0.93733833986777,0.16798212819886,0,0.358234090811393,0.290633938513962,0,0,0.264145302039678,0.207328115540772,0.144119953416961,0.12624243342638,0.190493682876507,0,0,1.71072446022705,0.514137463516618,0.300343057843917,0.285826432630578,0.224262168690721,0,0,0,0,0,0,1.04007436911366,0.257207374262142,0,0,0,0,0,0.325736184293735,0,0,0,0,0.299918973546171,0,0,2.10833939483032,0,0,2.85273810081437,0.289562613335158,0,0.716243852959582,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0.207970861530807,0,0.157702415033935,0.585707074963566,0.300946099727719,2.27407504055985,0,0,0,0.347534457872331,0.979005787313703,0,0,0,0,1.81876542867756,13.3148351608398,3.62868351995616,0.496215615637554,0.61384789315225,0.841980283299221,1.28139149255701,2.55853624533352,0.965123526861645,1.48418066444991,0.308419387605311,0.355123450626254,0.164254312027618,0.519254429183621,0.581051892299796,0.120859449591622,0,0.276242966807689,0,0,0.262248829918848,0,0,0.784349769176855,0,0.211103257785751,4.54933536283586,0.170093705276516,0.431831832204279,0,0.270946437543853,0.501689773854853,0,0,0,0,0.261435451024901,0,0.328014645699706,0,4.84292754744295,0.0915694648183434,0.082509499920588,0,0,0,0,0.154048617114644,0.307007349452259,0.137836572484531,0.537101224341368,0.580066775656914,0.170453254832202,0,0,0.192190067365106,0.127612712494584,0.30347334256665,0,0,0.6970372701606,0.308033580176089,0,0,0.55597265731176,0.429374660225974,0.372158369359667,0,0.190630193923825,0,0,0.636406495851874,0,0,0,0,0.202182481573316,1.58510321173008,0.421258456238981,0,0.243713489631284,1.05650146756755,0,0.141405431953713,1.13008116620243,0,1.32687795048244,0.438450885253763,0.578775534266688,0,0,0.30982349809975,0.281695602532241,0,0.0982490410131212,0,0,1.26664581178598,0.987884678879706,0.379473173765715,0,0.192444225451024,0,0,4.9896214411693,0.43050537267123,1.68471475667626,0.443430153536676,0,0,0.764637207142375,0,0,0,0,0.540031437238115,0,0,3.84991942105343,0,0,0,0,0,0,0,0,0,0,0,0,0,0.338583555603207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17206543417515,0.121360521749513,0,0,3.58116727106535,5.04839957415486,3.68592842519078,0,0,0,0,0,1.79323189425963,0.552567831062295,0,0.511343412510774,0,0,0,0,0,0.690503839458535,0,0,0,0,0,0.260427761085233,0,1.44999915086959,0.1137934482855,0,0.472775363535873,0,0,0,0,0,1.52581736317083,0,0.591095237907095,0.658156191461918,5.5558616394685,0.278847488557207,0.692552326534174,0,0,0,0,4.14701507651495,4.8546724502987,3.19820865611181,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0.995261931078505,0.530745387020035,0.611030144933625,0,0,0,0.471807930864739,0.802577647298789,0.468528891450678,0,0.586993856796269,0.485560759068186,0.789168805698781,0,0.91821828489147,1.20054501294127,0,0,0,0,0.313932918407225,1.19472429772959,0,0.138674673013139,0.173559738335131,0,0,1.04836000945218,0.343972064943233,0.0967563312890851,0,0,0.969890164884194,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| 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| ||
|short_description=p5@GSN | |||
}} | }} |
Latest revision as of 20:55, 24 September 2015
Short description: | p5@GSN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_GSN_5end |
Coexpression cluster: | C106_Hep2_epitheloid_placenta_cervical_rectal_anaplastic_glassy |
Association with transcript: | 47bp_to_ENST00000373806_5end |
EntrezGene: | GSN |
HGNC: | 4620 |
UniProt: | Q5T0H8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 1.15e-13 | 19 |
lymphangioblast | 3.43e-11 | 6 |
endothelial cell of lymphatic vessel | 3.43e-11 | 6 |
vascular lymphangioblast | 3.43e-11 | 6 |
chorionic membrane mesenchymal stem cell | 2.23e-07 | 3 |
placental epithelial cell | 3.45e-07 | 3 |
amnion mesenchymal stem cell | 7.60e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.77e-23 | 14 |
membranous layer | 1.77e-23 | 14 |
larynx | 2.17e-20 | 9 |
chorion | 6.26e-15 | 7 |
extraembryonic structure | 2.99e-14 | 24 |
organ component layer | 1.58e-13 | 66 |
upper respiratory tract | 3.27e-12 | 19 |
amnion | 1.98e-10 | 7 |
blood vessel layer | 2.15e-09 | 7 |
placenta | 3.19e-09 | 4 |
allantois | 3.19e-09 | 4 |
somatic layer of lateral plate mesoderm | 5.17e-09 | 8 |
lymphatic vessel | 3.42e-08 | 8 |
lymph vasculature | 3.42e-08 | 8 |
lymphatic part of lymphoid system | 3.42e-08 | 8 |
egg chorion | 2.23e-07 | 3 |
cardiac chamber | 3.17e-07 | 3 |