FFCP PHASE1:Hg19::chr9:139379145..139379159,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr9:139379145..139379159,- to FFCP PHASE1:Hg19::chr9:139379145..139379159,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr9:139379145..139379159,- | |||
|coexpression_cluster_id=C1549 | |||
|description=CAGE_peak_at_chr9:139379145..139379159,- | |||
|id=chr9:139379145..139379159,- | |||
|ontology_enrichment_celltype=CL:0000066!7.53e-41!254;CL:0000223!9.60e-27!59;CL:0002076!1.48e-22!43;CL:0002368!1.05e-13!13;CL:0002251!1.75e-10!21;CL:0002159!3.39e-09!13;CL:0002202!4.86e-09!9;CL:0002632!4.86e-09!9;CL:0000076!9.75e-09!62;CL:0000082!7.88e-08!19;CL:0000220!1.75e-07!246;CL:0002321!2.82e-07!248 | |||
|ontology_enrichment_celltype_v019=CL:0002368;3.01e-28;13!CL:0002076;2.43e-22;42!CL:0002159;1.99e-16;14!CL:0002202;2.45e-15;9!CL:0002632;2.45e-15;9!CL:0000244;4.31e-15;4!CL:0000731;4.31e-15;4!CL:0000307;1.36e-12;3!CL:0002328;1.68e-12;3!CL:0002621;2.06e-11;3!CL:0000317;1.04e-08;2!CL:1000448;1.04e-08;2!CL:0002308;1.04e-08;2!CL:0002140;1.04e-08;2!CL:0000575;1.75e-08;2!CL:0002251;3.77e-08;20!CL:0000362;3.10e-07;9!CL:0002077;9.05e-07;34 | |||
|ontology_enrichment_celltype_v019_2=CL:0002368,1.54e-28,13;CL:0002076,2.09e-28,42;CL:0000223,9.26e-27,58;CL:0000066,4.00e-23,253;CL:0002159,2.41e-16,14;CL:0002202,1.99e-15,9;CL:0002632,1.99e-15,9;CL:0000244,2.77e-15,4;CL:0000731,2.77e-15,4;CL:0002328,1.10e-12,3;CL:0000068,1.50e-12,3;CL:0000069,1.50e-12,3;CL:0000307,1.50e-12,3;CL:0000377,1.50e-12,3;CL:0002621,1.17e-11,3;CL:0000317,1.13e-08,2;CL:1000448,1.13e-08,2;CL:0002308,1.13e-08,2;CL:0002140,1.13e-08,2;CL:0002321,1.32e-08,250;CL:0000575,1.37e-08,2;CL:0002251,3.09e-08,20;CL:0002077,1.88e-07,34;CL:0000362,3.16e-07,9;CL:0000076,3.94e-07,63 | |||
|ontology_enrichment_development_v019=CL:0000223;4.09e-17;58!CL:0000377;1.36e-12;3 | |||
|ontology_enrichment_disease=DOID:305!5.42e-28!106;DOID:0050687!3.51e-19!143;DOID:1749!1.29e-12!14;DOID:162!9.88e-09!235;DOID:14566!1.60e-08!239 | |||
|ontology_enrichment_disease_v019=DOID:1749;7.94e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.12e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.24e-35!169;UBERON:0000925!1.24e-35!169;UBERON:0006595!1.24e-35!169;UBERON:0001007!4.36e-29!155;UBERON:0001555!4.36e-29!155;UBERON:0007026!4.36e-29!155;UBERON:0004921!5.72e-23!129;UBERON:0004185!5.72e-23!129;UBERON:0000077!6.01e-23!130;UBERON:0001004!1.06e-22!72;UBERON:0005911!9.48e-22!82;UBERON:0001041!9.66e-22!98;UBERON:0000065!2.71e-18!53;UBERON:0008947!7.54e-16!38;UBERON:0003258!7.54e-16!38;UBERON:0000072!3.75e-14!46;UBERON:0005157!4.88e-12!51;UBERON:0005153!5.65e-12!37;UBERON:0001048!6.95e-12!168;UBERON:0000466!7.19e-12!126;UBERON:0005178!2.69e-11!34;UBERON:0002224!2.69e-11!34;UBERON:0000481!6.85e-11!347;UBERON:0005181!8.91e-11!35;UBERON:0003929!2.59e-10!54;UBERON:0002365!6.25e-10!31;UBERON:0002330!6.25e-10!31;UBERON:0003104!6.41e-10!238;UBERON:0009142!6.41e-10!238;UBERON:0005177!7.51e-10!107;UBERON:0007196!1.92e-09!14;UBERON:0001558!1.92e-09!14;UBERON:0002530!5.44e-09!59;UBERON:0000062!1.23e-08!511;UBERON:0004807!2.98e-08!28;UBERON:0002048!3.08e-08!22;UBERON:0000117!3.08e-08!22;UBERON:0000171!3.08e-08!22;UBERON:0000170!3.08e-08!22;UBERON:0005597!3.08e-08!22;UBERON:0000118!3.08e-08!22;UBERON:0009569!5.03e-08!113;UBERON:0004802!7.88e-08!19;UBERON:0000115!7.88e-08!19;UBERON:0000344!8.44e-08!12;UBERON:0005910!9.50e-08!6;UBERON:0000915!1.34e-07!52;UBERON:0000161!1.35e-07!35;UBERON:0000464!1.62e-07!104;UBERON:0009497!2.28e-07!25;UBERON:0000015!2.28e-07!25;UBERON:0002423!2.28e-07!25;UBERON:0006235!2.28e-07!25;UBERON:0004161!2.28e-07!25;UBERON:0007499!3.26e-07!25;UBERON:0000365!4.61e-07!5;UBERON:0000166!6.05e-07!21;UBERON:0009856!8.88e-07!26;UBERON:0000165!9.58e-07!28;UBERON:0000930!9.58e-07!28 | |||
|ontology_enrichment_uberon_v019=UBERON:0000486;4.72e-14;12!UBERON:0004815;1.68e-12;3!UBERON:0002031;1.68e-12;3!UBERON:0000365;4.28e-12;5!UBERON:0001949;2.06e-11;3!UBERON:0005911;2.23e-10;36!UBERON:0005910;4.30e-10;6!UBERON:0000485;5.24e-09;7!UBERON:0007196;6.40e-09;15!UBERON:0001558;6.40e-09;15!UBERON:0002419;1.04e-08;2!UBERON:0007771;1.04e-08;2!UBERON:0003297;1.04e-08;2!UBERON:0001821;1.04e-08;2!UBERON:0003487;1.04e-08;2!UBERON:0001820;1.04e-08;2!UBERON:0002365;1.26e-08;31!UBERON:0002330;1.26e-08;31!UBERON:0003929;2.06e-08;7!UBERON:0002185;1.17e-07;5!UBERON:0004807;2.07e-07;22!UBERON:0003350;2.28e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,4.06e-15,160;UBERON:0000925,4.06e-15,160;UBERON:0006595,4.06e-15,160;UBERON:0005911,1.93e-13,82;UBERON:0004815,1.10e-12,3;UBERON:0002031,1.10e-12,3;UBERON:0000365,3.01e-12,5;UBERON:0001949,1.17e-11,3;UBERON:0005910,3.22e-10,6;UBERON:0001004,1.87e-09,74;UBERON:0007196,5.68e-09,15;UBERON:0001558,5.68e-09,15;UBERON:0002419,1.13e-08,2;UBERON:0007771,1.13e-08,2;UBERON:0003297,1.13e-08,2;UBERON:0001821,1.13e-08,2;UBERON:0003487,1.13e-08,2;UBERON:0001820,1.13e-08,2;UBERON:0005089,1.13e-08,2;UBERON:0005088,1.13e-08,2;UBERON:0002365,1.68e-08,31;UBERON:0002330,1.68e-08,31;UBERON:0001007,3.87e-08,145;UBERON:0001555,3.87e-08,145;UBERON:0007026,3.87e-08,145;UBERON:0002185,9.11e-08,5;UBERON:0003929,1.78e-07,54;UBERON:0003350,1.99e-07,8;UBERON:0000485,4.96e-07,9 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0.245733936501509,0.697801167972428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83884244895785,3.614471025339,6.65557218300218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.18577172975525,1.85392221392215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.48875241714027,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204154171254893,0,0,0,0,0,0,0,0,0.554128230968366,0,0,0.150238058906597,0,0,0,0.211931901159562,0.300091096084402,0,0.257640540045629,0,0,0,0,0,0,0,0,0,1.35282597214308,1.90922284413584,1.43402297694502,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0.337169380156203,0,0.220587945464788,0.217879444092406,0.474541238222193,0.269662616320329,0.196221465125346,0,0,0,1.2347220339942,0,11.4079531339648,1.96565443335525,2.95394953340702,0,1.22988438543114,0,4.17051084552777,4.49607013030478,0.904760751704678,0.0925884451585296,0.325808305310325,0,0,0,0,0,0,0,0,2.57545848628462,0,0,0,0.93733833986777,2.18376766658517,1.13420077793909,0.895585227028483,0.581267877027924,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173767228936166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.362578348774867,5.41367469818869,1.28913384510255,0,0,0,0.451199612907412,0,0,0,0,0,0,0,0,0,0,0.254876273045038,0.831076008928724,0,0,0,0,0,0,0.206082023295445,0,0,4.01985876597321,1.30012049207304,0,0,0,0,0,0,0,0,0,2.47927373041467,3.0750410778417,1.91419068741876,2.73126008309985,0,0,0,0,0,0,0.18532421910392,0,0,0,0,0,0,0,0,0,0,0,0.404364963146632,0,0,0,0.243713489631284,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0,0,0,0,0,0.329294892959902,0,0,2.59799704358883,2.01090682660736,4.3556393944529,0.564862804660675,3.01353760869861,1.68471475667626,1.7737206141467,1.37834040124176,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37428108081644,0,0,0,0,0,0,0,0,0,0.556543525114529,0,0,0,0,0.251932747854276,0,0,0,0.359473404589307,0.716084698702437,0,0,0,0,0,0.0927680981618513,0,0,3.32347999985544,0,1.82069517256799,0.762760950878299,0.472775363535873,0,0,0,0,0,0,0,0,0.219385397153973,0.10893846351899,0.139423744278603,0.0769502585037971,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210998064528027,0.163232808159148,0.141353071433941,0,0,0.176915129006678,0,0,0,0,0,0,0,0,0.782658475728359,0.485560759068186,0.394584402849391,2.41981432097328,0,0.063186579628488,0,0,0,0,0,0,0,0.138674673013139,0.173559738335131,1.17590876897253,1.04471047896483,0,0,0.0967563312890851,0.146178634172371,0.0821154570532092,0,0,0,0,0,0.126621591911757,0,1.04206466326994,0.640358984218058,0.19980960958213,1.44090417154106,0,1.37275998289572,0,0.248505071130865,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.551482276150566,0.906574442192831,0.674035438541849,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0.0788057072991982,0.0524545881349981,0.422401346077626,0,1.15149118391667,0,0,0,0,0,0,0,0,0,0,5.27588041241097,0,0,0,0.342173675768659,0.704815022316672,0.106787412567695,0.157204305099666,0,0,0.197611631897944,0,1.27668251554036,0,0,0,0,0.628216385000937,0,0.122026264901963,0,0,0,0.0620964029413835,0,0.249960815924213,0,0,0.470531639396343,0,0,0,0,0.554805861502613,0,0,0,0.457680136793847,0,0,0.147855149989634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26184898228651,0,0.214441591374926,0.260994291965212,0.226705925512272,0.231522474323834,0,1.07453304648892,0,0,0.176689145945881,0.192914038270915,0.168942440653073,0,0,0.607719912354764,0,0,0,0,0,0,0.422624246717254,0,0,0,0,0,0.279759015438889,1.24415452006595,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0.0691572524642179,0.322951291263702,0,2.64998839952769,0.471878893390961,0.550285795565037,0.462102664601353,0,0,0,0,0,3.12605604493237,0,0.163771917510097,0.147856086217045,0,0,0,0,0,0.548257766857182,0.496211178389294,0,0.383287282918786,0,0,0,0,0.0887023701626388,0,0.171488009437418,0.203909198930495,0.0657727735628491,0.354581522651905,0.333694205676207,0,0,0.280272163313789,0,0,0,0,0,0.23248285073625,0,0,0,0.3414369541879,0,1.29068207646083,0.118332000730565,0,0,0,0,0,0.223710863595585,0.098150233615243,0.365753774946808,0,0,0,0,0,0,0,0,0,0.150962843566674,0.154348316215889,0,5.64380755633827,0,1.88541237681301,0,0,0,0,0,0,0,0.71421575442263,0.352894871715692,0.962896400270019,0.730336388246517,0,0,0,0.135982980381829,0,0.5290268405154,0,0,0,0,0,0,0.101988829741982,0,0,0,0.0757786982182394,0,0,0,0,0,0.193766729508018,0,0.33639558774184,0,0,0.435433495793923,0,0.673520530145875,0.573777643141411,0.332660356546013,0.651226148887796,0.320182037633146,0,0,2.34640942403454,0.122241444182866,0,0,0,0 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| ||
|short_description=p@chr9:139379145..139379159,- | |||
}} | }} |
Latest revision as of 00:19, 1 August 2015
Short description: | p@chr9:139379145..139379159, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr9:139379145..139379159, - |
Coexpression cluster: | C1549_breast_liver_Sebocyte_Hepatocyte_pancreas_Bronchial_Prostate |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory epithelial cell | 1.54e-28 | 13 |
endo-epithelial cell | 2.09e-28 | 42 |
endodermal cell | 9.26e-27 | 58 |
epithelial cell | 4.00e-23 | 253 |
general ecto-epithelial cell | 2.41e-16 | 14 |
epithelial cell of tracheobronchial tree | 1.99e-15 | 9 |
epithelial cell of lower respiratory tract | 1.99e-15 | 9 |
transitional epithelial cell | 2.77e-15 | 4 |
urothelial cell | 2.77e-15 | 4 |
bronchial epithelial cell | 1.10e-12 | 3 |
duct epithelial cell | 1.50e-12 | 3 |
branched duct epithelial cell | 1.50e-12 | 3 |
tracheal epithelial cell | 1.50e-12 | 3 |
tracheoblast | 1.50e-12 | 3 |
gingival epithelial cell | 1.17e-11 | 3 |
sebum secreting cell | 1.13e-08 | 2 |
epithelial cell of sweat gland | 1.13e-08 | 2 |
epithelial cell of skin gland | 1.13e-08 | 2 |
acinar cell of sebaceous gland | 1.13e-08 | 2 |
embryonic cell | 1.32e-08 | 250 |
corneal epithelial cell | 1.37e-08 | 2 |
epithelial cell of alimentary canal | 3.09e-08 | 20 |
ecto-epithelial cell | 1.88e-07 | 34 |
epidermal cell | 3.16e-07 | 9 |
squamous epithelial cell | 3.94e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 4.06e-15 | 160 |
endoderm | 4.06e-15 | 160 |
presumptive endoderm | 4.06e-15 | 160 |
endo-epithelium | 1.93e-13 | 82 |
lower respiratory tract epithelium | 1.10e-12 | 3 |
epithelium of bronchus | 1.10e-12 | 3 |
urothelium | 3.01e-12 | 5 |
gingival epithelium | 1.17e-11 | 3 |
transitional epithelium | 3.22e-10 | 6 |
respiratory system | 1.87e-09 | 74 |
tracheobronchial tree | 5.68e-09 | 15 |
lower respiratory tract | 5.68e-09 | 15 |
skin gland | 1.13e-08 | 2 |
epidermis gland | 1.13e-08 | 2 |
gland of integumental system | 1.13e-08 | 2 |
sebaceous gland | 1.13e-08 | 2 |
skin sebaceous gland | 1.13e-08 | 2 |
sweat gland | 1.13e-08 | 2 |
sweat gland placode | 1.13e-08 | 2 |
sebaceous gland placode | 1.13e-08 | 2 |
exocrine gland | 1.68e-08 | 31 |
exocrine system | 1.68e-08 | 31 |
digestive system | 3.87e-08 | 145 |
digestive tract | 3.87e-08 | 145 |
primitive gut | 3.87e-08 | 145 |
bronchus | 9.11e-08 | 5 |
gut epithelium | 1.78e-07 | 54 |
epithelium of mucosa | 1.99e-07 | 8 |
simple columnar epithelium | 4.96e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.12e-08 | 14 |