FFCP PHASE1:Hg19::chrX:105970031..105970042,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chrX:105970031..105970042,+ to FFCP PHASE1:Hg19::chrX:105970031..105970042,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=79589 | |EntrezGene=79589 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21153 | |HGNC=21153 | ||
|TSSclassifier=strong | |||
|UniProt=Q8TEB7 | |UniProt=Q8TEB7 | ||
|association_with_transcript=137bp_to_ENST00000255499,NM_194463,uc004eml.2_5end | |||
|cluster_id=chrX:105970031..105970042,+ | |||
|description=CAGE_peak_4_at_RNF128_5end | |||
|id=chrX:105970031..105970042,+ | |||
|ontology_enrichment_celltype=CL:0000223!1.79e-08!59 | |||
|ontology_enrichment_celltype_v019=CL:0000182;8.45e-11;12!CL:0002231;7.18e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.16e-10,12;CL:0000223,5.22e-09,58;CL:0002231,6.49e-08,3 | |||
|ontology_enrichment_development_v019=UBERON:0009497;8.13e-10;13!UBERON:0004161;9.93e-08;11!UBERON:0006298;6.78e-07;1!UBERON:0008801;6.78e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3493;6.82e-12;2!DOID:1799;6.78e-07;1!DOID:10165;6.78e-07;1!DOID:1798;6.78e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3493,6.85e-12,2;DOID:1799,5.75e-07,1;DOID:10165,5.75e-07,1;DOID:1798,5.75e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.61e-18!115;UBERON:0001049!4.80e-13!57;UBERON:0005068!4.80e-13!57;UBERON:0006241!4.80e-13!57;UBERON:0007135!4.80e-13!57;UBERON:0002020!6.22e-12!34;UBERON:0003528!6.22e-12!34;UBERON:0001017!7.44e-12!82;UBERON:0001869!1.34e-11!32;UBERON:0002619!2.20e-11!22;UBERON:0000955!3.87e-11!69;UBERON:0006238!3.87e-11!69;UBERON:0005743!7.27e-11!86;UBERON:0001893!1.28e-10!34;UBERON:0002616!2.28e-10!59;UBERON:0002780!2.91e-10!41;UBERON:0001890!2.91e-10!41;UBERON:0006240!2.91e-10!41;UBERON:0004119!3.00e-10!169;UBERON:0000925!3.00e-10!169;UBERON:0006595!3.00e-10!169;UBERON:0002791!6.85e-10!33;UBERON:0003080!6.96e-10!42;UBERON:0001950!1.29e-09!20;UBERON:0000073!1.36e-09!94;UBERON:0001016!1.36e-09!94;UBERON:0000956!1.40e-09!25;UBERON:0000203!1.40e-09!25;UBERON:0000481!1.54e-09!347;UBERON:0004121!5.76e-09!169;UBERON:0000924!5.84e-09!173;UBERON:0006601!5.84e-09!173;UBERON:0000153!6.34e-09!129;UBERON:0007811!6.34e-09!129;UBERON:0000033!1.20e-08!123;UBERON:0000475!1.70e-08!365;UBERON:0003075!4.92e-08!86;UBERON:0007284!4.92e-08!86;UBERON:0001007!5.24e-08!155;UBERON:0001555!5.24e-08!155;UBERON:0007026!5.24e-08!155;UBERON:0002346!6.25e-08!90;UBERON:0004921!2.38e-07!129;UBERON:0004185!2.38e-07!129;UBERON:0005409!2.68e-07!35 | |||
|ontology_enrichment_uberon_v019=UBERON:0001829;3.95e-12;2!UBERON:0002108;3.81e-10;4!UBERON:0004921;6.03e-08;33!UBERON:0005409;8.38e-08;22!UBERON:0002365;1.88e-07;31!UBERON:0002330;1.88e-07;31!UBERON:0002423;5.07e-07;25!UBERON:0001831;6.78e-07;1!UBERON:0001736;6.78e-07;1!UBERON:0001567;6.78e-07;1!UBERON:0002107;9.99e-07;19!UBERON:0006925;9.99e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001829,4.68e-12,2;UBERON:0002108,4.20e-10,4;UBERON:0004921,4.46e-09,118;UBERON:0001007,6.46e-09,145;UBERON:0001555,6.46e-09,145;UBERON:0007026,6.46e-09,145;UBERON:0002530,1.11e-08,59;UBERON:0000949,5.69e-08,45;UBERON:0008835,5.85e-08,22;UBERON:0003894,5.85e-08,22;UBERON:0003929,6.43e-08,54;UBERON:0004119,1.02e-07,160;UBERON:0000925,1.02e-07,160;UBERON:0006595,1.02e-07,160;UBERON:0009854,1.37e-07,23;UBERON:0002365,1.77e-07,31;UBERON:0002330,1.77e-07,31;UBERON:0011216,3.09e-07,223;UBERON:0007499,6.17e-07,25;UBERON:0009497,6.17e-07,25;UBERON:0000015,6.17e-07,25;UBERON:0002423,6.17e-07,25;UBERON:0006235,6.17e-07,25;UBERON:0004161,6.17e-07,25;UBERON:0005409,7.15e-07,25;UBERON:0001736,7.19e-07,1;UBERON:0006298,7.19e-07,1;UBERON:0001831,7.60e-07,1;UBERON:0001567,7.60e-07,1;UBERON:0008801,7.60e-07,1 | |||
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| ||
|short_description=p4@RNF128 | |||
}} | }} |
Latest revision as of 22:12, 18 September 2015
Short description: | p4@RNF128 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RNF128_5end |
Coexpression cluster: | NA |
Association with transcript: | 137bp_to_ENST00000255499, NM_194463, uc004eml.2_5end |
EntrezGene: | RNF128 |
HGNC: | 21153 |
UniProt: | Q8TEB7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.16e-10 | 12 |
endodermal cell | 5.22e-09 | 58 |
epithelial cell of prostate | 6.49e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
major salivary gland | 4.68e-12 | 2 |
small intestine | 4.20e-10 | 4 |
subdivision of digestive tract | 4.46e-09 | 118 |
digestive system | 6.46e-09 | 145 |
digestive tract | 6.46e-09 | 145 |
primitive gut | 6.46e-09 | 145 |
gland | 1.11e-08 | 59 |
endocrine system | 5.69e-08 | 45 |
hepatic diverticulum | 5.85e-08 | 22 |
liver primordium | 5.85e-08 | 22 |
gut epithelium | 6.43e-08 | 54 |
endoderm-derived structure | 1.02e-07 | 160 |
endoderm | 1.02e-07 | 160 |
presumptive endoderm | 1.02e-07 | 160 |
digestive tract diverticulum | 1.37e-07 | 23 |
exocrine gland | 1.77e-07 | 31 |
exocrine system | 1.77e-07 | 31 |
organ system subdivision | 3.09e-07 | 223 |
epithelial sac | 6.17e-07 | 25 |
epithelium of foregut-midgut junction | 6.17e-07 | 25 |
anatomical boundary | 6.17e-07 | 25 |
hepatobiliary system | 6.17e-07 | 25 |
foregut-midgut junction | 6.17e-07 | 25 |
septum transversum | 6.17e-07 | 25 |
gastrointestinal system | 7.15e-07 | 25 |
submandibular gland | 7.19e-07 | 1 |
submandibular gland primordium | 7.19e-07 | 1 |
parotid gland | 7.60e-07 | 1 |
cheek | 7.60e-07 | 1 |
parotid gland primordium | 7.60e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 6.85e-12 | 2 |
islet cell tumor | 5.75e-07 | 1 |
endocrine pancreas cancer | 5.75e-07 | 1 |
pancreatic endocrine carcinoma | 5.75e-07 | 1 |