FFCP PHASE1:Mm9::chr14:70480962..70480969,+: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=910 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr14:70480962..70480969,+ | |||
|description=CAGE_peak_at_chr14:70480962..70480969,+ | |||
|id=chr14:70480962..70480969,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000893,1.75e-08,6;CL:0002489,1.75e-08,6;CL:0000898,1.75e-08,6;CL:0000809,1.75e-08,6;CL:0000810,1.75e-08,6;CL:0000895,1.75e-08,6;CL:0000808,1.75e-08,6;CL:0000894,1.75e-08,6;CL:0000806,1.75e-08,6;CL:0000807,1.75e-08,6;CL:0000805,1.75e-08,6;CL:0002425,1.75e-08,6;CL:0002436,1.75e-08,6;CL:0002427,1.75e-08,6;CL:0002428,1.75e-08,6;CL:0002429,1.75e-08,6;CL:0002433,1.75e-08,6;CL:0002431,1.75e-08,6;CL:0002432,1.75e-08,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002021!9.03e-20!10;UBERON:0000411!9.03e-20!10;UBERON:0001950!9.03e-20!10;UBERON:0002619!4.23e-13!17;UBERON:0000956!2.76e-12!21;UBERON:0001869!2.76e-12!21;UBERON:0000203!2.76e-12!21;UBERON:0003080!3.25e-10!40;UBERON:0000955!5.93e-10!50;UBERON:0006238!5.93e-10!50;UBERON:0002791!1.09e-09!29;UBERON:0003528!1.09e-09!29;UBERON:0001893!1.09e-09!29;UBERON:0002780!3.98e-09!39;UBERON:0001890!3.98e-09!39;UBERON:0006240!3.98e-09!39;UBERON:0002616!7.66e-09!49;UBERON:0000033!4.31e-08!63;UBERON:0002020!7.09e-08!34;UBERON:0003056!1.04e-07!49;UBERON:0007811!2.24e-07!86;UBERON:0000153!3.40e-07!94;UBERON:0001049!4.54e-07!52;UBERON:0005068!4.54e-07!52;UBERON:0006241!4.54e-07!52;UBERON:0007135!4.54e-07!52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002021,7.28e-39,10;UBERON:0000411,7.28e-39,10;UBERON:0001950,7.28e-39,10;UBERON:0002619,5.50e-23,17;UBERON:0000956,1.19e-18,21;UBERON:0001869,1.19e-18,21;UBERON:0000203,1.19e-18,21;UBERON:0003528,1.50e-13,29;UBERON:0002791,1.50e-13,29;UBERON:0001893,1.50e-13,29;UBERON:0002020,1.43e-11,34;UBERON:0002780,4.27e-10,39;UBERON:0001890,4.27e-10,39;UBERON:0006240,4.27e-10,39;UBERON:0003080,7.61e-10,40;UBERON:0002616,1.45e-08,46;UBERON:0000955,2.21e-08,47;UBERON:0006238,2.21e-08,47;UBERON:0003056,4.86e-08,49;UBERON:0001049,1.42e-07,52;UBERON:0005068,1.42e-07,52;UBERON:0006241,1.42e-07,52;UBERON:0007135,1.42e-07,52;UBERON:0000073,2.71e-07,54 | |||
|phase1_expression=0,0,0,0,0,0,0,0.129123323441576,3.23814060948833,2.57470978954193,0,0.0797721589953364,0,0,0,0,0,0.157731082679119,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202753862439029,0,0,0,0,0,0,0,0.335565212115473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122490799214954,0,0,0,0.127687338085188,0,0,0.0914876436024097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14084341977668,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149790639404823,0,0,0.173824320192276,0.255715457330331,0.20778804455956,0.162241263067758,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205782136407943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189667900953082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.642642632843614,0.141940085208269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241251699712623,0.119372344003136,0,0,0,0,0,0,0,0.136694227721025,0,0,0.139951452323658,0.138199973804424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12950368523413,0.460325236507177,2.29158205375759,0.343706364687375,1.37016503954128,0,0.675022500231806,1.35096360967266,1.35942722695261,1.55328093525546,0,0,0,0,0,0,0,0,0,0,0,0.188626341386076,0,0.0640251524048693,0,0,0,0.192909220463705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.249810577937946,0,0,0.191288332068843,0,0 | |phase1_expression=0,0,0,0,0,0,0,0.129123323441576,3.23814060948833,2.57470978954193,0,0.0797721589953364,0,0,0,0,0,0.157731082679119,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202753862439029,0,0,0,0,0,0,0,0.335565212115473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122490799214954,0,0,0,0.127687338085188,0,0,0.0914876436024097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14084341977668,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149790639404823,0,0,0.173824320192276,0.255715457330331,0.20778804455956,0.162241263067758,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205782136407943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189667900953082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.642642632843614,0.141940085208269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241251699712623,0.119372344003136,0,0,0,0,0,0,0,0.136694227721025,0,0,0.139951452323658,0.138199973804424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12950368523413,0.460325236507177,2.29158205375759,0.343706364687375,1.37016503954128,0,0.675022500231806,1.35096360967266,1.35942722695261,1.55328093525546,0,0,0,0,0,0,0,0,0,0,0,0.188626341386076,0,0.0640251524048693,0,0,0,0.192909220463705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.249810577937946,0,0,0.191288332068843,0,0 | ||
|short_description=p@chr14:70480962..70480969,+ | |||
}} | }} |
Latest revision as of 17:52, 4 August 2015
Short description: | p@chr14:70480962..70480969, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr14:70480962..70480969, + |
Coexpression cluster: | MCL_coexpression_mm9:910 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
thymocyte | 1.75e-08 | 6 |
double negative thymocyte | 1.75e-08 | 6 |
naive T cell | 1.75e-08 | 6 |
double-positive, alpha-beta thymocyte | 1.75e-08 | 6 |
CD4-positive, alpha-beta thymocyte | 1.75e-08 | 6 |
naive thymus-derived CD4-positive, alpha-beta T cell | 1.75e-08 | 6 |
DN4 thymocyte | 1.75e-08 | 6 |
DN1 thymic pro-T cell | 1.75e-08 | 6 |
DN2 thymocyte | 1.75e-08 | 6 |
DN3 thymocyte | 1.75e-08 | 6 |
immature single positive thymocyte | 1.75e-08 | 6 |
early T lineage precursor | 1.75e-08 | 6 |
mature CD4 single-positive thymocyte | 1.75e-08 | 6 |
resting double-positive thymocyte | 1.75e-08 | 6 |
double-positive blast | 1.75e-08 | 6 |
CD69-positive double-positive thymocyte | 1.75e-08 | 6 |
CD69-positive, CD4-positive single-positive thymocyte | 1.75e-08 | 6 |
CD4-positive, CD8-intermediate double-positive thymocyte | 1.75e-08 | 6 |
CD24-positive, CD4 single-positive thymocyte | 1.75e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
occipital lobe | 7.28e-39 | 10 |
visual cortex | 7.28e-39 | 10 |
neocortex | 7.28e-39 | 10 |
regional part of cerebral cortex | 5.50e-23 | 17 |
cerebral cortex | 1.19e-18 | 21 |
cerebral hemisphere | 1.19e-18 | 21 |
pallium | 1.19e-18 | 21 |
brain grey matter | 1.50e-13 | 29 |
regional part of telencephalon | 1.50e-13 | 29 |
telencephalon | 1.50e-13 | 29 |
gray matter | 1.43e-11 | 34 |
regional part of forebrain | 4.27e-10 | 39 |
forebrain | 4.27e-10 | 39 |
future forebrain | 4.27e-10 | 39 |
anterior neural tube | 7.61e-10 | 40 |
regional part of brain | 1.45e-08 | 46 |
brain | 2.21e-08 | 47 |
future brain | 2.21e-08 | 47 |
pre-chordal neural plate | 4.86e-08 | 49 |
neural tube | 1.42e-07 | 52 |
neural rod | 1.42e-07 | 52 |
future spinal cord | 1.42e-07 | 52 |
neural keel | 1.42e-07 | 52 |
regional part of nervous system | 2.71e-07 | 54 |