FF:11220-116B5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005631 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005631 | ||
|accession_numbers=CAGE;DRX008447;DRR009319;DRZ000744;DRZ002129;DRZ012094;DRZ013479 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037004;DRR041370;DRZ007012 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0002419,UBERON:0000483,UBERON:0000479,UBERON:0004121,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003102,UBERON:0007376,UBERON:0010371,UBERON:0002365,UBERON:0007771,UBERON:0002530,UBERON:0003297,UBERON:0001821,UBERON:0010317,UBERON:0003487,UBERON:0001820,UBERON:0002330,UBERON:0002416 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0000066,CL:0002371,CL:0000076,CL:0000150,CL:0000362,CL:0000154,CL:0002159,CL:0000255,CL:0002077,CL:0000317,CL:0000622,CL:1000448,CL:0002308,CL:0002140 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000160 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Sebocyte%252c%2520donor1.CNhs10847.11220-116B5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Sebocyte%252c%2520donor1.CNhs10847.11220-116B5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Sebocyte%252c%2520donor1.CNhs10847.11220-116B5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Sebocyte%252c%2520donor1.CNhs10847.11220-116B5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Sebocyte%252c%2520donor1.CNhs10847.11220-116B5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11220-116B5 | |id=FF:11220-116B5 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000160 | ||
|is_obsolete= | |||
|library_id=CNhs10847 | |||
|library_id_phase_based=2:CNhs10847 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11220 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10002.GTAGAG.11220 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11220 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10002.GTAGAG.11220 | |||
|name=Sebocyte, donor1 | |name=Sebocyte, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10847,LSID700,release009,COMPLETED | |profile_hcage=CNhs10847,LSID700,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10002,,, | |profile_srnaseq=SRhi10002,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,-0.275168710182474,-0.282403560576942,0,0,0,0,0,0,0,0,0.197077988480498,0,0.518127133982576,0,0,-0.153323010348428,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.219489484482706,0,0,0,0.332141639627736,0,0,0,0,0.0743239731274145,0,0,0,0,0,0,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.169200839341702,0,0,0,0,0,0,-0.00358475715384188,0,0,0,0.130026225094989,0.0478661642954192,0,0,0,0,-0.0980353512377064,-0.039938206560646,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00216540031778779,0,0,0,-0.164360914024306,-0.285924111742804,0,0,0,0,0,0 | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=N/A | |rna_catalog_number=N/A | ||
| Line 56: | Line 82: | ||
|rna_tube_id=116B5 | |rna_tube_id=116B5 | ||
|rna_weight_ug=23.463 | |rna_weight_ug=23.463 | ||
|rnaseq_library_id=SRhi10002.GTAGAG | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=A | |sample_ethnicity=A | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.02027949449315e-224!GO:0005737;cytoplasm;4.62436989511211e-189!GO:0043226;organelle;3.06270402537659e-169!GO:0043229;intracellular organelle;1.14444978425469e-168!GO:0043231;intracellular membrane-bound organelle;4.01305080201908e-156!GO:0043227;membrane-bound organelle;7.24459623260207e-156!GO:0044422;organelle part;1.25588365197772e-123!GO:0044446;intracellular organelle part;1.4600310998067e-122!GO:0044444;cytoplasmic part;1.26422846286669e-115!GO:0005515;protein binding;3.88767869407556e-87!GO:0032991;macromolecular complex;5.17345925800121e-86!GO:0044238;primary metabolic process;4.64409575269173e-79!GO:0044237;cellular metabolic process;4.94124889085996e-77!GO:0030529;ribonucleoprotein complex;1.00489874562119e-74!GO:0043170;macromolecule metabolic process;2.71343078194023e-71!GO:0043233;organelle lumen;3.27424049565796e-66!GO:0031974;membrane-enclosed lumen;3.27424049565796e-66!GO:0044428;nuclear part;3.83331170029533e-62!GO:0005634;nucleus;6.58078736694847e-60!GO:0003723;RNA binding;1.52527858511517e-59!GO:0005739;mitochondrion;3.23413720472131e-54!GO:0019538;protein metabolic process;3.69242348393617e-53!GO:0006412;translation;9.65027386886286e-49!GO:0005840;ribosome;6.32665489915253e-47!GO:0044260;cellular macromolecule metabolic process;7.16347958368945e-46!GO:0044267;cellular protein metabolic process;1.08294340587424e-45!GO:0016043;cellular component organization and biogenesis;1.27614305042361e-45!GO:0043234;protein complex;1.69859290374654e-43!GO:0031090;organelle membrane;1.81510045918609e-43!GO:0006396;RNA processing;4.93123985749832e-42!GO:0015031;protein transport;1.58842744579237e-41!GO:0003735;structural constituent of ribosome;3.00924909027628e-41!GO:0009058;biosynthetic process;5.89435910250197e-41!GO:0033036;macromolecule localization;1.48571219084098e-40!GO:0031981;nuclear lumen;1.85724929569339e-40!GO:0044249;cellular biosynthetic process;4.69290913445834e-39!GO:0005829;cytosol;1.72884103113386e-38!GO:0045184;establishment of protein localization;8.42028747784456e-38!GO:0008104;protein localization;1.65714802558682e-37!GO:0009059;macromolecule biosynthetic process;6.32224002649497e-37!GO:0044429;mitochondrial part;1.10621136620516e-36!GO:0043283;biopolymer metabolic process;1.1818438168433e-36!GO:0033279;ribosomal subunit;3.99149258545402e-34!GO:0043228;non-membrane-bound organelle;5.23876211849344e-34!GO:0043232;intracellular non-membrane-bound organelle;5.23876211849344e-34!GO:0010467;gene expression;7.69420815676191e-34!GO:0065003;macromolecular complex assembly;1.6112835627009e-33!GO:0046907;intracellular transport;3.42140700968248e-33!GO:0031967;organelle envelope;1.23124139130994e-32!GO:0031975;envelope;2.01271311380748e-32!GO:0016071;mRNA metabolic process;5.13783641667477e-32!GO:0006886;intracellular protein transport;1.37670823136017e-29!GO:0022607;cellular component assembly;1.6216122418293e-29!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.45825936972899e-29!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.99852545403292e-29!GO:0006996;organelle organization and biogenesis;6.30839639805096e-29!GO:0008380;RNA splicing;2.66060119490876e-28!GO:0006397;mRNA processing;3.14940438244628e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.53764672599584e-26!GO:0005654;nucleoplasm;3.87309762825122e-24!GO:0044445;cytosolic part;1.8414637188781e-23!GO:0005740;mitochondrial envelope;4.71944425865859e-23!GO:0005681;spliceosome;1.05280077130508e-21!GO:0031966;mitochondrial membrane;2.8859090341185e-21!GO:0051649;establishment of cellular localization;8.11149834150605e-21!GO:0044451;nucleoplasm part;1.31819872686655e-20!GO:0051641;cellular localization;1.31852644443836e-20!GO:0019866;organelle inner membrane;7.31489714761881e-20!GO:0048770;pigment granule;8.62604474489407e-20!GO:0042470;melanosome;8.62604474489407e-20!GO:0008134;transcription factor binding;7.70172196743731e-19!GO:0005730;nucleolus;9.09921049143282e-19!GO:0006259;DNA metabolic process;9.53492289264075e-19!GO:0005743;mitochondrial inner membrane;1.04005532330276e-18!GO:0016874;ligase activity;1.24549099212014e-18!GO:0012505;endomembrane system;2.50804357817449e-18!GO:0006457;protein folding;3.13521680595109e-18!GO:0015935;small ribosomal subunit;5.23109340783139e-18!GO:0006119;oxidative phosphorylation;6.77761310691308e-18!GO:0005783;endoplasmic reticulum;7.13775081427918e-18!GO:0016462;pyrophosphatase activity;1.65239256693742e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.1099253236373e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;2.49815381479181e-17!GO:0022618;protein-RNA complex assembly;4.72626219916173e-17!GO:0012501;programmed cell death;5.55903540974943e-17!GO:0015934;large ribosomal subunit;5.8476531495318e-17!GO:0031980;mitochondrial lumen;8.86232532741541e-17!GO:0005759;mitochondrial matrix;8.86232532741541e-17!GO:0000166;nucleotide binding;9.44017901801955e-17!GO:0006915;apoptosis;1.63054187086442e-16!GO:0017111;nucleoside-triphosphatase activity;1.63054187086442e-16!GO:0006605;protein targeting;2.56629338004911e-16!GO:0043285;biopolymer catabolic process;5.57272585823638e-16!GO:0044432;endoplasmic reticulum part;7.08027997244756e-16!GO:0007049;cell cycle;8.20008657883213e-16!GO:0008219;cell death;3.25278702443377e-15!GO:0016265;death;3.25278702443377e-15!GO:0006512;ubiquitin cycle;5.22891349877671e-15!GO:0009057;macromolecule catabolic process;9.98523534781701e-15!GO:0051186;cofactor metabolic process;1.00124984615817e-14!GO:0000502;proteasome complex (sensu Eukaryota);2.44191143640942e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.71668284748964e-14!GO:0044455;mitochondrial membrane part;3.47766997167254e-14!GO:0005794;Golgi apparatus;4.52376271054928e-14!GO:0030163;protein catabolic process;5.39266956246599e-14!GO:0044265;cellular macromolecule catabolic process;6.36665283138112e-14!GO:0043412;biopolymer modification;8.14289127637953e-14!GO:0016070;RNA metabolic process;9.79359780788851e-14!GO:0003676;nucleic acid binding;2.30873494948696e-13!GO:0051082;unfolded protein binding;2.31815360544834e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;4.30494989862905e-13!GO:0008135;translation factor activity, nucleic acid binding;4.73581135401064e-13!GO:0048193;Golgi vesicle transport;6.77291568684676e-13!GO:0042254;ribosome biogenesis and assembly;6.77291568684676e-13!GO:0019941;modification-dependent protein catabolic process;7.20929956841609e-13!GO:0043632;modification-dependent macromolecule catabolic process;7.20929956841609e-13!GO:0044257;cellular protein catabolic process;1.07372659958043e-12!GO:0006511;ubiquitin-dependent protein catabolic process;1.32622832606109e-12!GO:0044248;cellular catabolic process;1.35184498072173e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.55950002278203e-12!GO:0006461;protein complex assembly;1.66574021464935e-12!GO:0006464;protein modification process;1.69685815464446e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;4.15820228416489e-12!GO:0000375;RNA splicing, via transesterification reactions;4.15820228416489e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.15820228416489e-12!GO:0043067;regulation of programmed cell death;4.26679083561668e-12!GO:0005746;mitochondrial respiratory chain;4.45532490085245e-12!GO:0003712;transcription cofactor activity;4.52718294935412e-12!GO:0006913;nucleocytoplasmic transport;5.14555688027763e-12!GO:0032553;ribonucleotide binding;5.36903564083199e-12!GO:0032555;purine ribonucleotide binding;5.36903564083199e-12!GO:0042981;regulation of apoptosis;5.60090650134967e-12!GO:0006732;coenzyme metabolic process;6.3455960510845e-12!GO:0005761;mitochondrial ribosome;8.91619579730938e-12!GO:0000313;organellar ribosome;8.91619579730938e-12!GO:0022402;cell cycle process;9.96701786927261e-12!GO:0051169;nuclear transport;1.15655576913938e-11!GO:0017076;purine nucleotide binding;1.26660743182614e-11!GO:0000278;mitotic cell cycle;1.70569443721657e-11!GO:0016192;vesicle-mediated transport;2.13178498658381e-11!GO:0043687;post-translational protein modification;2.44302291121036e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.94325770482908e-11!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.08249604783421e-11!GO:0005789;endoplasmic reticulum membrane;4.45714459175626e-11!GO:0006413;translational initiation;7.26665941866531e-11!GO:0050136;NADH dehydrogenase (quinone) activity;1.19280060353856e-10!GO:0003954;NADH dehydrogenase activity;1.19280060353856e-10!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.19280060353856e-10!GO:0006366;transcription from RNA polymerase II promoter;1.64401258039172e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.25320713820441e-10!GO:0003743;translation initiation factor activity;2.59555078451458e-10!GO:0006446;regulation of translational initiation;2.69177073120989e-10!GO:0048523;negative regulation of cellular process;3.08791778481531e-10!GO:0016604;nuclear body;3.21940049289177e-10!GO:0005635;nuclear envelope;4.42448255176724e-10!GO:0008565;protein transporter activity;7.71169019649787e-10!GO:0051246;regulation of protein metabolic process;7.89200724010215e-10!GO:0008639;small protein conjugating enzyme activity;9.79270845230478e-10!GO:0042775;organelle ATP synthesis coupled electron transport;1.06016156289936e-09!GO:0042773;ATP synthesis coupled electron transport;1.06016156289936e-09!GO:0005793;ER-Golgi intermediate compartment;1.09730977149629e-09!GO:0019787;small conjugating protein ligase activity;1.43954851341316e-09!GO:0009259;ribonucleotide metabolic process;1.46398895003447e-09!GO:0006399;tRNA metabolic process;1.66791713818435e-09!GO:0017038;protein import;2.04351605220283e-09!GO:0004842;ubiquitin-protein ligase activity;2.14998939211315e-09!GO:0005524;ATP binding;2.37779071554553e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;2.76354535645401e-09!GO:0030964;NADH dehydrogenase complex (quinone);3.201603467137e-09!GO:0045271;respiratory chain complex I;3.201603467137e-09!GO:0005747;mitochondrial respiratory chain complex I;3.201603467137e-09!GO:0044453;nuclear membrane part;3.37266815308916e-09!GO:0009056;catabolic process;3.59036913114486e-09!GO:0000074;regulation of progression through cell cycle;4.3011432674397e-09!GO:0032559;adenyl ribonucleotide binding;4.4350367609758e-09!GO:0006163;purine nucleotide metabolic process;4.65942366855393e-09!GO:0048475;coated membrane;5.28551495832214e-09!GO:0030117;membrane coat;5.28551495832214e-09!GO:0031965;nuclear membrane;5.5323727350223e-09!GO:0051726;regulation of cell cycle;5.85124017651845e-09!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;7.07396128199615e-09!GO:0048519;negative regulation of biological process;7.23868170903615e-09!GO:0009150;purine ribonucleotide metabolic process;8.34859595227332e-09!GO:0043069;negative regulation of programmed cell death;8.51910743830272e-09!GO:0016881;acid-amino acid ligase activity;1.02902998287605e-08!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.06202213065733e-08!GO:0006323;DNA packaging;1.11440575308292e-08!GO:0030554;adenyl nucleotide binding;1.1807835372426e-08!GO:0051188;cofactor biosynthetic process;1.35592480990695e-08!GO:0048522;positive regulation of cellular process;1.71209189293801e-08!GO:0006364;rRNA processing;1.73507389784097e-08!GO:0016607;nuclear speck;2.2155993778351e-08!GO:0050794;regulation of cellular process;2.24625799122835e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.24625799122835e-08!GO:0009260;ribonucleotide biosynthetic process;2.34295804864573e-08!GO:0043066;negative regulation of apoptosis;2.37064064859688e-08!GO:0016072;rRNA metabolic process;2.37817228502873e-08!GO:0005768;endosome;2.48428498089331e-08!GO:0006974;response to DNA damage stimulus;2.55261469527815e-08!GO:0051276;chromosome organization and biogenesis;2.57464329815267e-08!GO:0006916;anti-apoptosis;2.68854575121244e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.15164423205925e-08!GO:0006164;purine nucleotide biosynthetic process;3.25003657303801e-08!GO:0009141;nucleoside triphosphate metabolic process;3.48312633518739e-08!GO:0009055;electron carrier activity;4.68342294411224e-08!GO:0005643;nuclear pore;4.68342294411224e-08!GO:0030120;vesicle coat;4.68954990103378e-08!GO:0030662;coated vesicle membrane;4.68954990103378e-08!GO:0009199;ribonucleoside triphosphate metabolic process;5.85084041746929e-08!GO:0009152;purine ribonucleotide biosynthetic process;5.85084041746929e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;5.90388606388212e-08!GO:0003924;GTPase activity;1.106116514563e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.12876411116193e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.12876411116193e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.12876411116193e-07!GO:0000087;M phase of mitotic cell cycle;1.15320886881584e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.22901551495504e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.22901551495504e-07!GO:0065002;intracellular protein transport across a membrane;1.25733866294027e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.28016600743821e-07!GO:0016887;ATPase activity;1.30060929194304e-07!GO:0007067;mitosis;1.32310791696501e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.38043807795543e-07!GO:0004386;helicase activity;1.50887858071939e-07!GO:0015986;ATP synthesis coupled proton transport;1.51931736464382e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.51931736464382e-07!GO:0042623;ATPase activity, coupled;1.62522171786697e-07!GO:0043038;amino acid activation;2.21139940293804e-07!GO:0006418;tRNA aminoacylation for protein translation;2.21139940293804e-07!GO:0043039;tRNA aminoacylation;2.21139940293804e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.77245330062263e-07!GO:0006888;ER to Golgi vesicle-mediated transport;2.80289786140987e-07!GO:0051170;nuclear import;2.91478114123962e-07!GO:0009142;nucleoside triphosphate biosynthetic process;2.93817215306586e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.93817215306586e-07!GO:0008026;ATP-dependent helicase activity;3.35302484359006e-07!GO:0016779;nucleotidyltransferase activity;3.44963621330518e-07!GO:0046034;ATP metabolic process;4.5281952546776e-07!GO:0009108;coenzyme biosynthetic process;6.31647413983361e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.33293822213254e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.33293822213254e-07!GO:0046930;pore complex;7.01798109455733e-07!GO:0006606;protein import into nucleus;7.30520592188755e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.8986172391642e-07!GO:0009060;aerobic respiration;8.07423951241388e-07!GO:0005788;endoplasmic reticulum lumen;9.94000622673573e-07!GO:0050657;nucleic acid transport;1.01841452665412e-06!GO:0051236;establishment of RNA localization;1.01841452665412e-06!GO:0050658;RNA transport;1.01841452665412e-06!GO:0003713;transcription coactivator activity;1.0670053136683e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.09173530220896e-06!GO:0006403;RNA localization;1.11231318366191e-06!GO:0022403;cell cycle phase;1.29703564845099e-06!GO:0031988;membrane-bound vesicle;1.64518684418332e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.6838906746663e-06!GO:0065004;protein-DNA complex assembly;1.71536675053193e-06!GO:0016740;transferase activity;1.72988636693135e-06!GO:0045333;cellular respiration;1.79279342341287e-06!GO:0007005;mitochondrion organization and biogenesis;1.81546260011226e-06!GO:0016563;transcription activator activity;1.88820177871922e-06!GO:0031252;leading edge;1.98632314799773e-06!GO:0006754;ATP biosynthetic process;2.00068311612617e-06!GO:0006753;nucleoside phosphate metabolic process;2.00068311612617e-06!GO:0006281;DNA repair;2.07687618052942e-06!GO:0009117;nucleotide metabolic process;2.17060982394321e-06!GO:0032446;protein modification by small protein conjugation;2.5059172717194e-06!GO:0016787;hydrolase activity;2.63087850927658e-06!GO:0009719;response to endogenous stimulus;2.64561150097075e-06!GO:0016568;chromatin modification;2.77688222658334e-06!GO:0048518;positive regulation of biological process;2.81542313469266e-06!GO:0016567;protein ubiquitination;2.82861221057014e-06!GO:0006260;DNA replication;3.1715748809068e-06!GO:0007243;protein kinase cascade;3.87800445745292e-06!GO:0019829;cation-transporting ATPase activity;3.99511418307382e-06!GO:0044431;Golgi apparatus part;4.03713694484133e-06!GO:0044440;endosomal part;4.32373608856865e-06!GO:0010008;endosome membrane;4.32373608856865e-06!GO:0006752;group transfer coenzyme metabolic process;4.45474213483807e-06!GO:0043623;cellular protein complex assembly;4.59879930411841e-06!GO:0005525;GTP binding;4.86537726524204e-06!GO:0031324;negative regulation of cellular metabolic process;5.18002046419617e-06!GO:0015078;hydrogen ion transmembrane transporter activity;5.70515159579203e-06!GO:0009967;positive regulation of signal transduction;6.22635129781814e-06!GO:0005694;chromosome;6.56633218888871e-06!GO:0006333;chromatin assembly or disassembly;6.98985471731175e-06!GO:0000245;spliceosome assembly;8.4219385977346e-06!GO:0016469;proton-transporting two-sector ATPase complex;9.14647700397191e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;9.44296801830362e-06!GO:0050789;regulation of biological process;9.53202136459198e-06!GO:0005667;transcription factor complex;1.02579871836525e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.06421487277752e-05!GO:0006099;tricarboxylic acid cycle;1.07759823647853e-05!GO:0046356;acetyl-CoA catabolic process;1.07759823647853e-05!GO:0000785;chromatin;1.1671993640421e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.25526369680823e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.35081318451281e-05!GO:0003714;transcription corepressor activity;1.50256657300433e-05!GO:0005773;vacuole;1.75073336593882e-05!GO:0003697;single-stranded DNA binding;2.01703754644527e-05!GO:0031982;vesicle;2.05194962841818e-05!GO:0051427;hormone receptor binding;2.19889999494353e-05!GO:0042802;identical protein binding;2.35233835210043e-05!GO:0006793;phosphorus metabolic process;2.37229246718009e-05!GO:0006796;phosphate metabolic process;2.37229246718009e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.37705733154736e-05!GO:0006084;acetyl-CoA metabolic process;2.37705733154736e-05!GO:0051187;cofactor catabolic process;2.49293424144026e-05!GO:0003899;DNA-directed RNA polymerase activity;2.6441151767285e-05!GO:0016491;oxidoreductase activity;2.64903453066678e-05!GO:0045259;proton-transporting ATP synthase complex;2.71653107508094e-05!GO:0051028;mRNA transport;2.85792666290939e-05!GO:0019899;enzyme binding;2.8625087027499e-05!GO:0009109;coenzyme catabolic process;2.88418446401878e-05!GO:0031410;cytoplasmic vesicle;2.9434979099688e-05!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.02757959892749e-05!GO:0044427;chromosomal part;3.07702025065436e-05!GO:0003724;RNA helicase activity;3.14936400750991e-05!GO:0051301;cell division;3.26262540202416e-05!GO:0030118;clathrin coat;3.70842983722956e-05!GO:0045893;positive regulation of transcription, DNA-dependent;4.10679938283035e-05!GO:0035257;nuclear hormone receptor binding;4.35280759583284e-05!GO:0016564;transcription repressor activity;4.36487673869501e-05!GO:0051789;response to protein stimulus;4.36487673869501e-05!GO:0006986;response to unfolded protein;4.36487673869501e-05!GO:0006613;cotranslational protein targeting to membrane;4.47023530811149e-05!GO:0005770;late endosome;4.61762630603127e-05!GO:0009892;negative regulation of metabolic process;4.84000379200672e-05!GO:0004298;threonine endopeptidase activity;5.14397346585175e-05!GO:0045941;positive regulation of transcription;5.83371865502261e-05!GO:0032561;guanyl ribonucleotide binding;6.94125291692377e-05!GO:0019001;guanyl nucleotide binding;6.94125291692377e-05!GO:0048468;cell development;7.20159488060504e-05!GO:0000323;lytic vacuole;7.57168124724683e-05!GO:0005764;lysosome;7.57168124724683e-05!GO:0005798;Golgi-associated vesicle;7.89822580009887e-05!GO:0000139;Golgi membrane;7.96369291960258e-05!GO:0000279;M phase;8.4367697214973e-05!GO:0016481;negative regulation of transcription;8.79919628908066e-05!GO:0030036;actin cytoskeleton organization and biogenesis;0.000104451268853319!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000107663494048605!GO:0005769;early endosome;0.000131454709946401!GO:0030119;AP-type membrane coat adaptor complex;0.000133075202696505!GO:0008654;phospholipid biosynthetic process;0.000134070444841458!GO:0065009;regulation of a molecular function;0.00014572831060354!GO:0008092;cytoskeletal protein binding;0.000151713869580244!GO:0016126;sterol biosynthetic process;0.000165475358108623!GO:0007010;cytoskeleton organization and biogenesis;0.000167252476442236!GO:0043065;positive regulation of apoptosis;0.000173878049318433!GO:0016859;cis-trans isomerase activity;0.000188133098565288!GO:0030867;rough endoplasmic reticulum membrane;0.000188367583916575!GO:0048471;perinuclear region of cytoplasm;0.000190335959842367!GO:0043068;positive regulation of programmed cell death;0.000194346438359101!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00020758850234604!GO:0030133;transport vesicle;0.000227943043805901!GO:0030131;clathrin adaptor complex;0.000231690847659234!GO:0000151;ubiquitin ligase complex;0.000232275085789976!GO:0051168;nuclear export;0.000244293187650056!GO:0016310;phosphorylation;0.000256490942936253!GO:0005762;mitochondrial large ribosomal subunit;0.000274547916503973!GO:0000315;organellar large ribosomal subunit;0.000274547916503973!GO:0005048;signal sequence binding;0.000276713581355551!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000288068490655256!GO:0045786;negative regulation of progression through cell cycle;0.000293292825364263!GO:0006334;nucleosome assembly;0.000331114486051203!GO:0001726;ruffle;0.000361888269079662!GO:0016853;isomerase activity;0.000388277116627139!GO:0019843;rRNA binding;0.000433159583422732!GO:0015630;microtubule cytoskeleton;0.000442312370154727!GO:0030132;clathrin coat of coated pit;0.000479239890459313!GO:0043566;structure-specific DNA binding;0.00048248305187625!GO:0008186;RNA-dependent ATPase activity;0.000506915787711539!GO:0006612;protein targeting to membrane;0.000539964794459986!GO:0031497;chromatin assembly;0.000560007484189051!GO:0051329;interphase of mitotic cell cycle;0.000600617903694505!GO:0005905;coated pit;0.000607997549061592!GO:0005885;Arp2/3 protein complex;0.000613432213151254!GO:0030880;RNA polymerase complex;0.000657086946966918!GO:0033116;ER-Golgi intermediate compartment membrane;0.000669604025912255!GO:0043021;ribonucleoprotein binding;0.000749380254499846!GO:0030029;actin filament-based process;0.000762836405314482!GO:0008632;apoptotic program;0.00078050948591204!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000835769877063393!GO:0045454;cell redox homeostasis;0.000905105612623919!GO:0044452;nucleolar part;0.000910111103884889!GO:0030658;transport vesicle membrane;0.000935930888849705!GO:0035258;steroid hormone receptor binding;0.00098779256933112!GO:0006402;mRNA catabolic process;0.00120844580066501!GO:0051325;interphase;0.00123178849745845!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00123178849745845!GO:0051252;regulation of RNA metabolic process;0.00127195158237427!GO:0016044;membrane organization and biogenesis;0.00128764363103625!GO:0004004;ATP-dependent RNA helicase activity;0.00137154835172787!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00138969887014982!GO:0000428;DNA-directed RNA polymerase complex;0.00138969887014982!GO:0043488;regulation of mRNA stability;0.00138969887014982!GO:0043487;regulation of RNA stability;0.00138969887014982!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00148081071047994!GO:0031968;organelle outer membrane;0.00149685548530641!GO:0008250;oligosaccharyl transferase complex;0.00153702088990566!GO:0006091;generation of precursor metabolites and energy;0.0015501967209291!GO:0009165;nucleotide biosynthetic process;0.00158381640809174!GO:0006695;cholesterol biosynthetic process;0.0017386127746156!GO:0005791;rough endoplasmic reticulum;0.00184773157207701!GO:0008033;tRNA processing;0.00189529664249811!GO:0019867;outer membrane;0.00189823243213842!GO:0030521;androgen receptor signaling pathway;0.00200037100792241!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00200088554522372!GO:0006401;RNA catabolic process;0.00202641140343943!GO:0000314;organellar small ribosomal subunit;0.00202641140343943!GO:0005763;mitochondrial small ribosomal subunit;0.00202641140343943!GO:0006979;response to oxidative stress;0.00203902889900524!GO:0006950;response to stress;0.00204265391229277!GO:0046474;glycerophospholipid biosynthetic process;0.00204872403218475!GO:0015980;energy derivation by oxidation of organic compounds;0.00208867566628119!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00208867566628119!GO:0051920;peroxiredoxin activity;0.00210352357505364!GO:0019222;regulation of metabolic process;0.00211524462811794!GO:0008283;cell proliferation;0.00211922010029379!GO:0031072;heat shock protein binding;0.00212576004736767!GO:0045892;negative regulation of transcription, DNA-dependent;0.00219945929519258!GO:0006417;regulation of translation;0.00223438408121705!GO:0065007;biological regulation;0.00229628009712771!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00231216880425446!GO:0000059;protein import into nucleus, docking;0.00237944458459974!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00244127599160606!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00251049081850959!GO:0007264;small GTPase mediated signal transduction;0.00252860738405891!GO:0005741;mitochondrial outer membrane;0.00267227570459337!GO:0006626;protein targeting to mitochondrion;0.00267741027832659!GO:0007088;regulation of mitosis;0.00268229142739229!GO:0006891;intra-Golgi vesicle-mediated transport;0.00280860717158721!GO:0030660;Golgi-associated vesicle membrane;0.0028560649799863!GO:0006917;induction of apoptosis;0.00298680869993762!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00304430978133493!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00304430978133493!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00304430978133493!GO:0004576;oligosaccharyl transferase activity;0.00327743964366074!GO:0050790;regulation of catalytic activity;0.0033979097942116!GO:0005819;spindle;0.00349172260952601!GO:0008610;lipid biosynthetic process;0.00357947346407735!GO:0005856;cytoskeleton;0.00363844635605527!GO:0043681;protein import into mitochondrion;0.00364963501100185!GO:0017166;vinculin binding;0.00368233367867921!GO:0030027;lamellipodium;0.00382663936915391!GO:0003711;transcription elongation regulator activity;0.00390940997142308!GO:0030125;clathrin vesicle coat;0.00401652768730822!GO:0030665;clathrin coated vesicle membrane;0.00401652768730822!GO:0012502;induction of programmed cell death;0.00411423341878781!GO:0048487;beta-tubulin binding;0.00411458857703086!GO:0030216;keratinocyte differentiation;0.00411875064646264!GO:0008361;regulation of cell size;0.00411875064646264!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00412763827735988!GO:0006368;RNA elongation from RNA polymerase II promoter;0.00416658601302474!GO:0008139;nuclear localization sequence binding;0.00417464712361627!GO:0008243;plasminogen activator activity;0.00419555246159201!GO:0018196;peptidyl-asparagine modification;0.00445071479641804!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00445071479641804!GO:0016049;cell growth;0.00458180774067879!GO:0005813;centrosome;0.00459974669652507!GO:0030127;COPII vesicle coat;0.0049246733284704!GO:0012507;ER to Golgi transport vesicle membrane;0.0049246733284704!GO:0008637;apoptotic mitochondrial changes;0.00499686939216787!GO:0006354;RNA elongation;0.00530495017198736!GO:0003729;mRNA binding;0.00540796591427242!GO:0016251;general RNA polymerase II transcription factor activity;0.00551862983831523!GO:0048500;signal recognition particle;0.0055843629431289!GO:0005684;U2-dependent spliceosome;0.00567314265185913!GO:0030134;ER to Golgi transport vesicle;0.00567314265185913!GO:0006414;translational elongation;0.00587530743317096!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00610899628281184!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00632792653633194!GO:0030176;integral to endoplasmic reticulum membrane;0.00651202305361998!GO:0051235;maintenance of localization;0.00667999360334943!GO:0046489;phosphoinositide biosynthetic process;0.00679928738234735!GO:0030663;COPI coated vesicle membrane;0.00684291862613308!GO:0030126;COPI vesicle coat;0.00684291862613308!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00694865381029283!GO:0006352;transcription initiation;0.00696655602731383!GO:0007006;mitochondrial membrane organization and biogenesis;0.00701327803886878!GO:0009893;positive regulation of metabolic process;0.00706089798544788!GO:0006383;transcription from RNA polymerase III promoter;0.00719570739182076!GO:0006611;protein export from nucleus;0.00747779609441842!GO:0030137;COPI-coated vesicle;0.00751417566592177!GO:0031326;regulation of cellular biosynthetic process;0.00751417566592177!GO:0006839;mitochondrial transport;0.00802262755185426!GO:0046483;heterocycle metabolic process;0.00831333017409416!GO:0001558;regulation of cell growth;0.00831333017409416!GO:0016363;nuclear matrix;0.00853303377310866!GO:0009889;regulation of biosynthetic process;0.00871475980396386!GO:0050681;androgen receptor binding;0.00912392303473!GO:0006595;polyamine metabolic process;0.00912392303473!GO:0001836;release of cytochrome c from mitochondria;0.00962958027296987!GO:0016197;endosome transport;0.00985280423195907!GO:0033673;negative regulation of kinase activity;0.0101187820637936!GO:0006469;negative regulation of protein kinase activity;0.0101187820637936!GO:0030659;cytoplasmic vesicle membrane;0.0108437129104957!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0109991087486565!GO:0048144;fibroblast proliferation;0.0110974410842683!GO:0048145;regulation of fibroblast proliferation;0.0110974410842683!GO:0007265;Ras protein signal transduction;0.0112721582852658!GO:0005869;dynactin complex;0.0113454816216611!GO:0005149;interleukin-1 receptor binding;0.0118288677189789!GO:0005862;muscle thin filament tropomyosin;0.0119076887959267!GO:0006650;glycerophospholipid metabolic process;0.0122121681518683!GO:0005815;microtubule organizing center;0.0122429100938198!GO:0008047;enzyme activator activity;0.012765033558868!GO:0000049;tRNA binding;0.0128755002370961!GO:0051128;regulation of cellular component organization and biogenesis;0.0128755002370961!GO:0015992;proton transport;0.0130724677750879!GO:0006818;hydrogen transport;0.0130958531728559!GO:0030057;desmosome;0.01315873371374!GO:0035035;histone acetyltransferase binding;0.0136187048003051!GO:0046822;regulation of nucleocytoplasmic transport;0.0138178175646982!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0138178175646982!GO:0045047;protein targeting to ER;0.0138178175646982!GO:0048146;positive regulation of fibroblast proliferation;0.0139107177949721!GO:0008312;7S RNA binding;0.0139107177949721!GO:0051101;regulation of DNA binding;0.0140133376655642!GO:0006405;RNA export from nucleus;0.0142636241478529!GO:0005832;chaperonin-containing T-complex;0.014603701083857!GO:0051287;NAD binding;0.0146494797322782!GO:0030518;steroid hormone receptor signaling pathway;0.014850939679533!GO:0016125;sterol metabolic process;0.0150597590534145!GO:0051348;negative regulation of transferase activity;0.0151718971936852!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0152680035845777!GO:0019752;carboxylic acid metabolic process;0.0152680035845777!GO:0006082;organic acid metabolic process;0.0153739983773905!GO:0051087;chaperone binding;0.0157609651388308!GO:0007242;intracellular signaling cascade;0.0164005339643537!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0164170540315859!GO:0030031;cell projection biogenesis;0.0165866681815465!GO:0000075;cell cycle checkpoint;0.0169690736679135!GO:0000209;protein polyubiquitination;0.0172356087175846!GO:0003684;damaged DNA binding;0.0172356087175846!GO:0050662;coenzyme binding;0.0177332839981226!GO:0031529;ruffle organization and biogenesis;0.017784152845741!GO:0008022;protein C-terminus binding;0.0182172108646071!GO:0006376;mRNA splice site selection;0.0187319988894967!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0187319988894967!GO:0046467;membrane lipid biosynthetic process;0.0190504087833109!GO:0005774;vacuolar membrane;0.0192250914568131!GO:0032507;maintenance of cellular protein localization;0.0192250914568131!GO:0009112;nucleobase metabolic process;0.0192962729169603!GO:0030833;regulation of actin filament polymerization;0.0193904812371557!GO:0043022;ribosome binding;0.0194972014980716!GO:0051098;regulation of binding;0.0197557171897811!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0201626705255662!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0201626705255662!GO:0051272;positive regulation of cell motility;0.020537938515621!GO:0040017;positive regulation of locomotion;0.020537938515621!GO:0003682;chromatin binding;0.020939870841302!GO:0003756;protein disulfide isomerase activity;0.021027764017358!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.021027764017358!GO:0006520;amino acid metabolic process;0.0211524468685172!GO:0008180;signalosome;0.0214166095286317!GO:0043624;cellular protein complex disassembly;0.0215924357754624!GO:0015631;tubulin binding;0.0219463353816786!GO:0032984;macromolecular complex disassembly;0.022053270008473!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0223558167180397!GO:0015399;primary active transmembrane transporter activity;0.0223558167180397!GO:0022415;viral reproductive process;0.0223558167180397!GO:0005912;adherens junction;0.0224450036822041!GO:0031902;late endosome membrane;0.0224450036822041!GO:0008538;proteasome activator activity;0.0225048959916787!GO:0030149;sphingolipid catabolic process;0.0225048959916787!GO:0045334;clathrin-coated endocytic vesicle;0.0234287204630821!GO:0009116;nucleoside metabolic process;0.0237479761418555!GO:0006509;membrane protein ectodomain proteolysis;0.0237758792003497!GO:0033619;membrane protein proteolysis;0.0237758792003497!GO:0044433;cytoplasmic vesicle part;0.0241057404143019!GO:0000082;G1/S transition of mitotic cell cycle;0.0244852245655287!GO:0051270;regulation of cell motility;0.0244920153765726!GO:0032508;DNA duplex unwinding;0.0244920153765726!GO:0032392;DNA geometric change;0.0244920153765726!GO:0008629;induction of apoptosis by intracellular signals;0.0246711007559037!GO:0051338;regulation of transferase activity;0.024813826884219!GO:0030384;phosphoinositide metabolic process;0.024813826884219!GO:0007176;regulation of epidermal growth factor receptor activity;0.0248917511028035!GO:0045792;negative regulation of cell size;0.0250376727758906!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0251774632969517!GO:0016408;C-acyltransferase activity;0.0253182776830491!GO:0000339;RNA cap binding;0.0255369429173868!GO:0045787;positive regulation of progression through cell cycle;0.0259133059764905!GO:0007034;vacuolar transport;0.0266929872669867!GO:0005657;replication fork;0.027118500199991!GO:0051052;regulation of DNA metabolic process;0.0278153051320369!GO:0007050;cell cycle arrest;0.0279826091849797!GO:0043284;biopolymer biosynthetic process;0.0280156840050583!GO:0009303;rRNA transcription;0.0280156840050583!GO:0030041;actin filament polymerization;0.0281672136777031!GO:0004680;casein kinase activity;0.0282567635843534!GO:0031325;positive regulation of cellular metabolic process;0.0283310865043436!GO:0022890;inorganic cation transmembrane transporter activity;0.0283310865043436!GO:0043241;protein complex disassembly;0.0284141708411147!GO:0006778;porphyrin metabolic process;0.0284141708411147!GO:0033013;tetrapyrrole metabolic process;0.0284141708411147!GO:0044262;cellular carbohydrate metabolic process;0.0284141708411147!GO:0005938;cell cortex;0.0285865307545314!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0291181769702593!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0297677557962945!GO:0003746;translation elongation factor activity;0.0300119689252495!GO:0008154;actin polymerization and/or depolymerization;0.0310679482888525!GO:0006458;'de novo' protein folding;0.0313213349973294!GO:0051084;'de novo' posttranslational protein folding;0.0313213349973294!GO:0051540;metal cluster binding;0.0315486210141064!GO:0051536;iron-sulfur cluster binding;0.0315486210141064!GO:0030308;negative regulation of cell growth;0.031667321555582!GO:0006897;endocytosis;0.0321708150336821!GO:0010324;membrane invagination;0.0321708150336821!GO:0008426;protein kinase C inhibitor activity;0.0328521816235344!GO:0000786;nucleosome;0.0333467043566318!GO:0003702;RNA polymerase II transcription factor activity;0.0337055927614174!GO:0051092;activation of NF-kappaB transcription factor;0.0337055927614174!GO:0004674;protein serine/threonine kinase activity;0.0343106457676089!GO:0030433;ER-associated protein catabolic process;0.0343106457676089!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0343106457676089!GO:0007051;spindle organization and biogenesis;0.0343106457676089!GO:0046519;sphingoid metabolic process;0.0343106457676089!GO:0006289;nucleotide-excision repair;0.0343106457676089!GO:0009166;nucleotide catabolic process;0.034328891980958!GO:0030032;lamellipodium biogenesis;0.0345183350402324!GO:0030128;clathrin coat of endocytic vesicle;0.0346457409569311!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0346457409569311!GO:0030122;AP-2 adaptor complex;0.0346457409569311!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0346846318406946!GO:0051651;maintenance of cellular localization;0.0355855698746355!GO:0045045;secretory pathway;0.0366679406450595!GO:0006984;ER-nuclear signaling pathway;0.0369350262474232!GO:0005925;focal adhesion;0.0369392808400832!GO:0016272;prefoldin complex;0.0371961994057937!GO:0001533;cornified envelope;0.0372023848061335!GO:0040011;locomotion;0.0381051037493021!GO:0033559;unsaturated fatty acid metabolic process;0.0381779207755489!GO:0006636;unsaturated fatty acid biosynthetic process;0.0381779207755489!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0381882397395592!GO:0044437;vacuolar part;0.0384331207023699!GO:0048037;cofactor binding;0.03898185302608!GO:0007040;lysosome organization and biogenesis;0.0390343450378422!GO:0022408;negative regulation of cell-cell adhesion;0.0394622972121066!GO:0043071;positive regulation of non-apoptotic programmed cell death;0.0395910044989778!GO:0043189;H4/H2A histone acetyltransferase complex;0.0400782775357358!GO:0046426;negative regulation of JAK-STAT cascade;0.0402689227730115!GO:0006144;purine base metabolic process;0.0406091349943245!GO:0005092;GDP-dissociation inhibitor activity;0.0406091349943245!GO:0043549;regulation of kinase activity;0.0409120684868281!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0409120684868281!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.0409120684868281!GO:0007041;lysosomal transport;0.0412794567653696!GO:0035267;NuA4 histone acetyltransferase complex;0.0420611782831934!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0421136545888575!GO:0051059;NF-kappaB binding;0.0421136545888575!GO:0005765;lysosomal membrane;0.0422089283905084!GO:0006779;porphyrin biosynthetic process;0.0422089283905084!GO:0033014;tetrapyrrole biosynthetic process;0.0422089283905084!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0422728762084959!GO:0006338;chromatin remodeling;0.0427379145118805!GO:0043495;protein anchor;0.0430818463232482!GO:0030522;intracellular receptor-mediated signaling pathway;0.0435146860670995!GO:0016311;dephosphorylation;0.0437801733984293!GO:0005669;transcription factor TFIID complex;0.0441291266582305!GO:0051336;regulation of hydrolase activity;0.0441808095399615!GO:0022411;cellular component disassembly;0.0444025912725812!GO:0008097;5S rRNA binding;0.0448562870435281!GO:0016717;oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water;0.0451868070564173!GO:0030100;regulation of endocytosis;0.0456701955512511!GO:0040012;regulation of locomotion;0.0458577748184136!GO:0003678;DNA helicase activity;0.0467359755681045!GO:0042168;heme metabolic process;0.0473981244385094!GO:0007033;vacuole organization and biogenesis;0.0473981244385094!GO:0045936;negative regulation of phosphate metabolic process;0.047645011531078!GO:0009966;regulation of signal transduction;0.0480243640911488!GO:0006268;DNA unwinding during replication;0.0480243640911488!GO:0031272;regulation of pseudopodium formation;0.0480243640911488!GO:0031269;pseudopodium formation;0.0480243640911488!GO:0031344;regulation of cell projection organization and biogenesis;0.0480243640911488!GO:0031268;pseudopodium organization and biogenesis;0.0480243640911488!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0480243640911488!GO:0031274;positive regulation of pseudopodium formation;0.0480243640911488!GO:0030911;TPR domain binding;0.0490053744430893!GO:0007398;ectoderm development;0.0491805662420648!GO:0006506;GPI anchor biosynthetic process;0.0493065861999765!GO:0006261;DNA-dependent DNA replication;0.0496415515014744!GO:0000096;sulfur amino acid metabolic process;0.0497022853774255!GO:0031901;early endosome membrane;0.0497646140200313!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0498819043900842!GO:0040008;regulation of growth;0.0499382801258379 | |||
|sample_id=11220 | |sample_id=11220 | ||
|sample_note=machine failed, remainder reloaded, low amount | |sample_note=machine failed, remainder reloaded, low amount | ||
| Line 76: | Line 105: | ||
|sample_tissue=skin | |sample_tissue=skin | ||
|top_motifs=TP53:2.70908833073;TBX4,5:2.57979775095;ADNP_IRX_SIX_ZHX:1.58297672046;ZNF238:1.5743557489;SPZ1:1.53453079806;ZEB1:1.47711336553;TFCP2:1.43368013215;TFAP2{A,C}:1.43091245991;ZNF148:1.41121360942;EBF1:1.31803861489;PDX1:1.23575053673;IKZF1:1.23009877401;SNAI1..3:1.20948787833;TBP:1.16950513789;GLI1..3:1.15848203406;NANOG:1.10206263308;VSX1,2:1.04329563372;NFIX:0.990669446657;TEAD1:0.978573618045;HAND1,2:0.921838098601;XCPE1{core}:0.883287244971;bHLH_family:0.857595429978;PAX4:0.817682991912;ZNF423:0.808586554266;GTF2A1,2:0.788847242813;NKX2-3_NKX2-5:0.783868508976;ONECUT1,2:0.777648960299;SOX17:0.771761809562;FOS_FOS{B,L1}_JUN{B,D}:0.764212348383;SP1:0.75432771674;EN1,2:0.752243815626;HLF:0.742566045211;MTF1:0.71259203403;MYOD1:0.686213804163;NKX2-1,4:0.676516122636;CEBPA,B_DDIT3:0.668815982407;PAX1,9:0.611802774811;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.587401725675;NKX3-2:0.560581666641;HES1:0.550551807216;BACH2:0.548123643582;HSF1,2:0.545645945096;PAX8:0.532691909415;SMAD1..7,9:0.526253590824;TLX1..3_NFIC{dimer}:0.523012695068;HOX{A5,B5}:0.518871317522;FOSL2:0.515926607309;GFI1B:0.510274387639;HOX{A6,A7,B6,B7}:0.502643197823;EP300:0.487413349984;FOXM1:0.438877390666;TFDP1:0.429864610486;MAZ:0.42359393644;CRX:0.40839309673;JUN:0.380479835214;GZF1:0.367828728838;POU1F1:0.36647300986;HOX{A4,D4}:0.364773981195;TEF:0.334050766364;STAT5{A,B}:0.326887389869;IRF7:0.29617100903;ARID5B:0.285985664778;KLF4:0.276477060254;T:0.244792026085;ZIC1..3:0.235158198096;POU6F1:0.221056131954;NFIL3:0.22067232212;HNF1A:0.205605037585;ELK1,4_GABP{A,B1}:0.185570554695;NR5A1,2:0.171813959002;FOXA2:0.16979780689;GTF2I:0.168381280553;AR:0.16628699979;POU2F1..3:0.148197069894;NFKB1_REL_RELA:0.13775411955;SRF:0.125350006256;RREB1:0.113788662892;LMO2:0.10590443694;ZBTB6:0.102705375868;GCM1,2:0.0933945108693;TFAP2B:0.0891639432199;MED-1{core}:0.0729964333029;NFE2:0.0546242880312;TFAP4:0.0539785708051;MTE{core}:0.048436823968;TOPORS:0.0461373285495;PAX2:0.0437752197465;NR1H4:0.0427252656593;PBX1:0.0398144568571;HIF1A:0.0365108745895;REST:0.0318126041327;LHX3,4:0.00238566519131;LEF1_TCF7_TCF7L1,2:-0.00829032561603;ZNF143:-0.00972024309538;POU3F1..4:-0.0323337869666;GATA6:-0.0493538078806;ETS1,2:-0.0541088783456;RXR{A,B,G}:-0.0914675350563;PAX5:-0.0927198903527;NR6A1:-0.100954735106;YY1:-0.101370605175;ESRRA:-0.114436039112;NKX2-2,8:-0.117220699402;OCT4_SOX2{dimer}:-0.117411840423;NR3C1:-0.12560309694;ALX4:-0.135825956505;ATF2:-0.14169161609;NFATC1..3:-0.146725566826;SOX2:-0.15186982131;HIC1:-0.16138979614;NFE2L2:-0.171396275976;RXRA_VDR{dimer}:-0.1763198182;MYBL2:-0.20212312506;FOXL1:-0.20609115246;CDC5L:-0.213695715632;MAFB:-0.220811036201;NHLH1,2:-0.258368003789;HMX1:-0.261978836029;GFI1:-0.264036985405;ATF5_CREB3:-0.268937002033;MEF2{A,B,C,D}:-0.27919285676;PATZ1:-0.280428997678;STAT2,4,6:-0.281843787341;NFY{A,B,C}:-0.288462604315;ESR1:-0.291445170668;HMGA1,2:-0.295966580279;ELF1,2,4:-0.319443575595;ZFP161:-0.346655675062;PRDM1:-0.361554363944;RBPJ:-0.361986567268;FOXN1:-0.373383607301;RUNX1..3:-0.374454497518;PRRX1,2:-0.388633339715;SPIB:-0.393728104669;NKX3-1:-0.398609683136;MZF1:-0.401927249166;SOX{8,9,10}:-0.40295745544;SPI1:-0.414079965691;E2F1..5:-0.426283277146;HNF4A_NR2F1,2:-0.427423923148;MYB:-0.433515995869;TLX2:-0.448008702675;NANOG{mouse}:-0.450999688776;ATF4:-0.470583026278;NRF1:-0.484960330319;POU5F1:-0.489381356138;UFEwm:-0.52125416359;ZNF384:-0.553077175883;FOXP3:-0.568438360117;RFX1:-0.573828532213;FOX{F1,F2,J1}:-0.581645582956;PITX1..3:-0.583580304942;HBP1_HMGB_SSRP1_UBTF:-0.594091229838;SREBF1,2:-0.594441710641;RFX2..5_RFXANK_RFXAP:-0.595855214796;IRF1,2:-0.612543113481;MYFfamily:-0.626228920747;SOX5:-0.637162039028;CUX2:-0.637783574178;TGIF1:-0.63926667491;CREB1:-0.671508469282;AHR_ARNT_ARNT2:-0.680020582417;FOXO1,3,4:-0.68404369631;PAX3,7:-0.692431254275;NFE2L1:-0.721536801751;FOX{D1,D2}:-0.776275307731;ATF6:-0.778507754891;EVI1:-0.78094230892;FOXQ1:-0.800404888607;EGR1..3:-0.809916655093;AIRE:-0.833456958244;BPTF:-0.83718936786;TAL1_TCF{3,4,12}:-0.842872502498;RORA:-0.860054711246;STAT1,3:-0.861259173423;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.878200012898;PPARG:-0.906444639939;PAX6:-0.969712286386;XBP1:-0.985231181586;BREu{core}:-1.0198182245;DMAP1_NCOR{1,2}_SMARC:-1.04284247622;CDX1,2,4:-1.07410313318;FOXP1:-1.08555199129;ZBTB16:-1.10323145608;DBP:-1.11053412174;FOX{I1,J2}:-1.15562254408;NKX6-1,2:-1.20331955261;HOXA9_MEIS1:-1.21134506856;GATA4:-1.26841043833;FOXD3:-1.39852886429;ALX1:-1.62922703851;IKZF2:-1.78398467998 | |top_motifs=TP53:2.70908833073;TBX4,5:2.57979775095;ADNP_IRX_SIX_ZHX:1.58297672046;ZNF238:1.5743557489;SPZ1:1.53453079806;ZEB1:1.47711336553;TFCP2:1.43368013215;TFAP2{A,C}:1.43091245991;ZNF148:1.41121360942;EBF1:1.31803861489;PDX1:1.23575053673;IKZF1:1.23009877401;SNAI1..3:1.20948787833;TBP:1.16950513789;GLI1..3:1.15848203406;NANOG:1.10206263308;VSX1,2:1.04329563372;NFIX:0.990669446657;TEAD1:0.978573618045;HAND1,2:0.921838098601;XCPE1{core}:0.883287244971;bHLH_family:0.857595429978;PAX4:0.817682991912;ZNF423:0.808586554266;GTF2A1,2:0.788847242813;NKX2-3_NKX2-5:0.783868508976;ONECUT1,2:0.777648960299;SOX17:0.771761809562;FOS_FOS{B,L1}_JUN{B,D}:0.764212348383;SP1:0.75432771674;EN1,2:0.752243815626;HLF:0.742566045211;MTF1:0.71259203403;MYOD1:0.686213804163;NKX2-1,4:0.676516122636;CEBPA,B_DDIT3:0.668815982407;PAX1,9:0.611802774811;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.587401725675;NKX3-2:0.560581666641;HES1:0.550551807216;BACH2:0.548123643582;HSF1,2:0.545645945096;PAX8:0.532691909415;SMAD1..7,9:0.526253590824;TLX1..3_NFIC{dimer}:0.523012695068;HOX{A5,B5}:0.518871317522;FOSL2:0.515926607309;GFI1B:0.510274387639;HOX{A6,A7,B6,B7}:0.502643197823;EP300:0.487413349984;FOXM1:0.438877390666;TFDP1:0.429864610486;MAZ:0.42359393644;CRX:0.40839309673;JUN:0.380479835214;GZF1:0.367828728838;POU1F1:0.36647300986;HOX{A4,D4}:0.364773981195;TEF:0.334050766364;STAT5{A,B}:0.326887389869;IRF7:0.29617100903;ARID5B:0.285985664778;KLF4:0.276477060254;T:0.244792026085;ZIC1..3:0.235158198096;POU6F1:0.221056131954;NFIL3:0.22067232212;HNF1A:0.205605037585;ELK1,4_GABP{A,B1}:0.185570554695;NR5A1,2:0.171813959002;FOXA2:0.16979780689;GTF2I:0.168381280553;AR:0.16628699979;POU2F1..3:0.148197069894;NFKB1_REL_RELA:0.13775411955;SRF:0.125350006256;RREB1:0.113788662892;LMO2:0.10590443694;ZBTB6:0.102705375868;GCM1,2:0.0933945108693;TFAP2B:0.0891639432199;MED-1{core}:0.0729964333029;NFE2:0.0546242880312;TFAP4:0.0539785708051;MTE{core}:0.048436823968;TOPORS:0.0461373285495;PAX2:0.0437752197465;NR1H4:0.0427252656593;PBX1:0.0398144568571;HIF1A:0.0365108745895;REST:0.0318126041327;LHX3,4:0.00238566519131;LEF1_TCF7_TCF7L1,2:-0.00829032561603;ZNF143:-0.00972024309538;POU3F1..4:-0.0323337869666;GATA6:-0.0493538078806;ETS1,2:-0.0541088783456;RXR{A,B,G}:-0.0914675350563;PAX5:-0.0927198903527;NR6A1:-0.100954735106;YY1:-0.101370605175;ESRRA:-0.114436039112;NKX2-2,8:-0.117220699402;OCT4_SOX2{dimer}:-0.117411840423;NR3C1:-0.12560309694;ALX4:-0.135825956505;ATF2:-0.14169161609;NFATC1..3:-0.146725566826;SOX2:-0.15186982131;HIC1:-0.16138979614;NFE2L2:-0.171396275976;RXRA_VDR{dimer}:-0.1763198182;MYBL2:-0.20212312506;FOXL1:-0.20609115246;CDC5L:-0.213695715632;MAFB:-0.220811036201;NHLH1,2:-0.258368003789;HMX1:-0.261978836029;GFI1:-0.264036985405;ATF5_CREB3:-0.268937002033;MEF2{A,B,C,D}:-0.27919285676;PATZ1:-0.280428997678;STAT2,4,6:-0.281843787341;NFY{A,B,C}:-0.288462604315;ESR1:-0.291445170668;HMGA1,2:-0.295966580279;ELF1,2,4:-0.319443575595;ZFP161:-0.346655675062;PRDM1:-0.361554363944;RBPJ:-0.361986567268;FOXN1:-0.373383607301;RUNX1..3:-0.374454497518;PRRX1,2:-0.388633339715;SPIB:-0.393728104669;NKX3-1:-0.398609683136;MZF1:-0.401927249166;SOX{8,9,10}:-0.40295745544;SPI1:-0.414079965691;E2F1..5:-0.426283277146;HNF4A_NR2F1,2:-0.427423923148;MYB:-0.433515995869;TLX2:-0.448008702675;NANOG{mouse}:-0.450999688776;ATF4:-0.470583026278;NRF1:-0.484960330319;POU5F1:-0.489381356138;UFEwm:-0.52125416359;ZNF384:-0.553077175883;FOXP3:-0.568438360117;RFX1:-0.573828532213;FOX{F1,F2,J1}:-0.581645582956;PITX1..3:-0.583580304942;HBP1_HMGB_SSRP1_UBTF:-0.594091229838;SREBF1,2:-0.594441710641;RFX2..5_RFXANK_RFXAP:-0.595855214796;IRF1,2:-0.612543113481;MYFfamily:-0.626228920747;SOX5:-0.637162039028;CUX2:-0.637783574178;TGIF1:-0.63926667491;CREB1:-0.671508469282;AHR_ARNT_ARNT2:-0.680020582417;FOXO1,3,4:-0.68404369631;PAX3,7:-0.692431254275;NFE2L1:-0.721536801751;FOX{D1,D2}:-0.776275307731;ATF6:-0.778507754891;EVI1:-0.78094230892;FOXQ1:-0.800404888607;EGR1..3:-0.809916655093;AIRE:-0.833456958244;BPTF:-0.83718936786;TAL1_TCF{3,4,12}:-0.842872502498;RORA:-0.860054711246;STAT1,3:-0.861259173423;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.878200012898;PPARG:-0.906444639939;PAX6:-0.969712286386;XBP1:-0.985231181586;BREu{core}:-1.0198182245;DMAP1_NCOR{1,2}_SMARC:-1.04284247622;CDX1,2,4:-1.07410313318;FOXP1:-1.08555199129;ZBTB16:-1.10323145608;DBP:-1.11053412174;FOX{I1,J2}:-1.15562254408;NKX6-1,2:-1.20331955261;HOXA9_MEIS1:-1.21134506856;GATA4:-1.26841043833;FOXD3:-1.39852886429;ALX1:-1.62922703851;IKZF2:-1.78398467998 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11220-116B5;search_select_hide=table117:FF:11220-116B5 | |||
}} | }} | ||
Latest revision as of 16:25, 3 June 2020
| Name: | Sebocyte, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10847 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10847
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10847
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.719 |
| 10 | 10 | 0.0756 |
| 100 | 100 | 0.846 |
| 101 | 101 | 0.0561 |
| 102 | 102 | 0.623 |
| 103 | 103 | 0.306 |
| 104 | 104 | 0.506 |
| 105 | 105 | 0.0049 |
| 106 | 106 | 0.0527 |
| 107 | 107 | 0.0197 |
| 108 | 108 | 0.814 |
| 109 | 109 | 0.0445 |
| 11 | 11 | 0.426 |
| 110 | 110 | 0.306 |
| 111 | 111 | 0.885 |
| 112 | 112 | 0.511 |
| 113 | 113 | 0.64 |
| 114 | 114 | 0.802 |
| 115 | 115 | 0.235 |
| 116 | 116 | 0.696 |
| 117 | 117 | 0.98 |
| 118 | 118 | 0.647 |
| 119 | 119 | 0.5 |
| 12 | 12 | 0.476 |
| 120 | 120 | 0.36 |
| 121 | 121 | 0.165 |
| 122 | 122 | 0.0971 |
| 123 | 123 | 0.0985 |
| 124 | 124 | 0.231 |
| 125 | 125 | 0.581 |
| 126 | 126 | 0.923 |
| 127 | 127 | 0.4 |
| 128 | 128 | 0.458 |
| 129 | 129 | 0.151 |
| 13 | 13 | 0.068 |
| 130 | 130 | 0.0971 |
| 131 | 131 | 0.694 |
| 132 | 132 | 0.458 |
| 133 | 133 | 0.0108 |
| 134 | 134 | 0.93 |
| 135 | 135 | 0.993 |
| 136 | 136 | 0.704 |
| 137 | 137 | 0.237 |
| 138 | 138 | 0.834 |
| 139 | 139 | 0.288 |
| 14 | 14 | 0.659 |
| 140 | 140 | 0.831 |
| 141 | 141 | 0.571 |
| 142 | 142 | 0.187 |
| 143 | 143 | 0.479 |
| 144 | 144 | 0.14 |
| 145 | 145 | 0.151 |
| 146 | 146 | 0.00969 |
| 147 | 147 | 0.316 |
| 148 | 148 | 0.118 |
| 149 | 149 | 0.473 |
| 15 | 15 | 0.985 |
| 150 | 150 | 0.204 |
| 151 | 151 | 0.355 |
| 152 | 152 | 0.00868 |
| 153 | 153 | 0.54 |
| 154 | 154 | 0.535 |
| 155 | 155 | 0.377 |
| 156 | 156 | 0.572 |
| 157 | 157 | 0.685 |
| 158 | 158 | 0.274 |
| 159 | 159 | 0.622 |
| 16 | 16 | 0.1 |
| 160 | 160 | 0.179 |
| 161 | 161 | 0.774 |
| 162 | 162 | 0.791 |
| 163 | 163 | 0.937 |
| 164 | 164 | 0.731 |
| 165 | 165 | 0.55 |
| 166 | 166 | 0.578 |
| 167 | 167 | 0.0665 |
| 168 | 168 | 0.226 |
| 169 | 169 | 0.054 |
| 17 | 17 | 0.0568 |
| 18 | 18 | 0.164 |
| 19 | 19 | 0.661 |
| 2 | 2 | 0.0915 |
| 20 | 20 | 0.894 |
| 21 | 21 | 0.471 |
| 22 | 22 | 0.348 |
| 23 | 23 | 0.316 |
| 24 | 24 | 0.0129 |
| 25 | 25 | 0.725 |
| 26 | 26 | 0.551 |
| 27 | 27 | 0.586 |
| 28 | 28 | 0.814 |
| 29 | 29 | 0.813 |
| 3 | 3 | 0.894 |
| 30 | 30 | 0.0481 |
| 31 | 31 | 0.746 |
| 32 | 32 | 0.905 |
| 33 | 33 | 0.26 |
| 34 | 34 | 0.402 |
| 35 | 35 | 0.362 |
| 36 | 36 | 0.411 |
| 37 | 37 | 0.44 |
| 38 | 38 | 0.359 |
| 39 | 39 | 0.0967 |
| 4 | 4 | 0.628 |
| 40 | 40 | 0.00484 |
| 41 | 41 | 0.671 |
| 42 | 42 | 0.79 |
| 43 | 43 | 0.521 |
| 44 | 44 | 0.213 |
| 45 | 45 | 0.0618 |
| 46 | 46 | 0.787 |
| 47 | 47 | 0.539 |
| 48 | 48 | 0.314 |
| 49 | 49 | 0.797 |
| 5 | 5 | 0.955 |
| 50 | 50 | 0.226 |
| 51 | 51 | 0.538 |
| 52 | 52 | 0.0611 |
| 53 | 53 | 0.941 |
| 54 | 54 | 0.606 |
| 55 | 55 | 0.851 |
| 56 | 56 | 0.209 |
| 57 | 57 | 0.383 |
| 58 | 58 | 0.814 |
| 59 | 59 | 0.169 |
| 6 | 6 | 0.078 |
| 60 | 60 | 0.112 |
| 61 | 61 | 0.786 |
| 62 | 62 | 0.608 |
| 63 | 63 | 0.114 |
| 64 | 64 | 0.509 |
| 65 | 65 | 0.568 |
| 66 | 66 | 0.297 |
| 67 | 67 | 0.412 |
| 68 | 68 | 0.632 |
| 69 | 69 | 0.959 |
| 7 | 7 | 0.307 |
| 70 | 70 | 0.31 |
| 71 | 71 | 0.358 |
| 72 | 72 | 0.88 |
| 73 | 73 | 0.015 |
| 74 | 74 | 0.0767 |
| 75 | 75 | 0.991 |
| 76 | 76 | 0.821 |
| 77 | 77 | 0.0056 |
| 78 | 78 | 0.331 |
| 79 | 79 | 0.854 |
| 8 | 8 | 0.41 |
| 80 | 80 | 0.232 |
| 81 | 81 | 0.261 |
| 82 | 82 | 0.772 |
| 83 | 83 | 0.731 |
| 84 | 84 | 0.689 |
| 85 | 85 | 0.879 |
| 86 | 86 | 0.452 |
| 87 | 87 | 0.0877 |
| 88 | 88 | 0.652 |
| 89 | 89 | 0.109 |
| 9 | 9 | 0.484 |
| 90 | 90 | 0.709 |
| 91 | 91 | 0.373 |
| 92 | 92 | 0.373 |
| 93 | 93 | 0.303 |
| 94 | 94 | 0.823 |
| 95 | 95 | 0.131 |
| 96 | 96 | 0.714 |
| 97 | 97 | 0.145 |
| 98 | 98 | 0.547 |
| 99 | 99 | 0.053 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10847
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000160 human sebocyte sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0000150 (glandular epithelial cell)
0000362 (epidermal cell)
0000154 (protein secreting cell)
0002159 (general ecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0000317 (sebum secreting cell)
0000622 (acinar cell)
1000448 (epithelial cell of sweat gland)
0002308 (epithelial cell of skin gland)
0002140 (acinar cell of sebaceous gland)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001003 (skin epidermis)
0002097 (skin of body)
0002199 (integument)
0002419 (skin gland)
0000483 (epithelium)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003102 (surface structure)
0007376 (outer epithelium)
0010371 (ecto-epithelium)
0002365 (exocrine gland)
0007771 (epidermis gland)
0002530 (gland)
0003297 (gland of integumental system)
0001821 (sebaceous gland)
0010317 (germ layer / neural crest derived structure)
0003487 (skin sebaceous gland)
0001820 (sweat gland)
0002330 (exocrine system)
0002416 (integumental system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000160 (human sebocyte sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000221 (ectodermal cell)
