FF:11232-116C8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005865 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005865 | ||
|accession_numbers=CAGE;DRX008322;DRR009194;DRZ000619;DRZ002004;DRZ011969;DRZ013354 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037073;DRR041439;DRZ007081 | |||
|ancestors_in_anatomy_facet= | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0000255,CL:0000235 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000086 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Macrophage%2520-%2520monocyte%2520derived%252c%2520donor1.CNhs10861.11232-116C8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Macrophage%2520-%2520monocyte%2520derived%252c%2520donor1.CNhs10861.11232-116C8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Macrophage%2520-%2520monocyte%2520derived%252c%2520donor1.CNhs10861.11232-116C8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Macrophage%2520-%2520monocyte%2520derived%252c%2520donor1.CNhs10861.11232-116C8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Macrophage%2520-%2520monocyte%2520derived%252c%2520donor1.CNhs10861.11232-116C8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11232-116C8 | |id=FF:11232-116C8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000086 | ||
|is_obsolete= | |||
|library_id=CNhs10861 | |||
|library_id_phase_based=2:CNhs10861 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11232 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10006.GCCAAT.11232 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11232 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10006.GCCAAT.11232 | |||
|name=Macrophage - monocyte derived, donor1 | |name=Macrophage - monocyte derived, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10861,LSID702,release008,COMPLETED | |profile_hcage=CNhs10861,LSID702,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10006,,, | |profile_srnaseq=SRhi10006,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.253654850231623,0,0,0,0,-0.160318030086386,0.0955936734149088,0.157768283976057,-0.195455991608202,0,0.173895137937481,0,0,0,0,0,0,0,0.393978959673908,0.0955936734149088,0,0,-0.0577293369335189,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.100585955095583,0,0.0955936734149088,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.393978959673908,0,-0.0207019270399679,0.173895137937481,-0.00139868782769635,0,0,0.0765515107243844,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393978959673908,0,0,0,0,0.134744405676195,0,0.0955936734149088,0,0,0,-0.456977975852864,0.120106209617621,0,0,-0.0502910746729099,-0.163400565988414,0,0,0.0869475689687405,0,-0.00244167782279764,-0.090680364093441,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0094260249537203,0,0,0,0.13100305625231,0.273395106116844,0,0,0,0,0,0 | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=3H100-80-10 | |rna_catalog_number=3H100-80-10 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=116C8 | |rna_tube_id=116C8 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10006.GCCAAT | |||
|sample_age=65 | |sample_age=65 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.25816756650092e-231!GO:0005737;cytoplasm;7.83840710958623e-169!GO:0043227;membrane-bound organelle;3.61594488804103e-148!GO:0043231;intracellular membrane-bound organelle;8.82441533700959e-148!GO:0043226;organelle;1.01904984978917e-133!GO:0043229;intracellular organelle;5.07241520299579e-133!GO:0044444;cytoplasmic part;7.05781297634615e-132!GO:0044422;organelle part;6.65499758596987e-106!GO:0044446;intracellular organelle part;5.9550122634883e-104!GO:0044237;cellular metabolic process;8.59390484713633e-74!GO:0032991;macromolecular complex;8.83318378026807e-73!GO:0044238;primary metabolic process;8.3482120832916e-72!GO:0043170;macromolecule metabolic process;9.944733930007e-62!GO:0005739;mitochondrion;5.55194191959868e-58!GO:0030529;ribonucleoprotein complex;7.26799763021312e-58!GO:0031090;organelle membrane;8.70978669608743e-56!GO:0003723;RNA binding;4.08399391207374e-54!GO:0005515;protein binding;3.79122485323568e-50!GO:0043233;organelle lumen;5.52179052443234e-50!GO:0031974;membrane-enclosed lumen;5.52179052443234e-50!GO:0033036;macromolecule localization;2.79664770768713e-49!GO:0044428;nuclear part;1.04810148210355e-48!GO:0019538;protein metabolic process;8.27712931219533e-48!GO:0015031;protein transport;2.57805538912556e-47!GO:0045184;establishment of protein localization;5.58871242987294e-47!GO:0008104;protein localization;4.51237988966012e-46!GO:0044260;cellular macromolecule metabolic process;1.05845034867606e-43!GO:0044267;cellular protein metabolic process;5.4739365364413e-43!GO:0044429;mitochondrial part;1.07305646143787e-41!GO:0005634;nucleus;5.00832788885835e-41!GO:0006412;translation;9.34941463578215e-41!GO:0009058;biosynthetic process;2.64012243614769e-40!GO:0043234;protein complex;1.54634998810188e-38!GO:0031967;organelle envelope;2.65813235920813e-38!GO:0031975;envelope;5.94625674276638e-38!GO:0005829;cytosol;5.67766104543636e-37!GO:0009059;macromolecule biosynthetic process;5.44221378868635e-36!GO:0006396;RNA processing;3.65200036346791e-35!GO:0044249;cellular biosynthetic process;4.81921647214739e-34!GO:0005840;ribosome;1.23688561823703e-32!GO:0046907;intracellular transport;1.50036240034654e-32!GO:0016071;mRNA metabolic process;2.15609128789431e-31!GO:0006886;intracellular protein transport;5.58738028094186e-30!GO:0016043;cellular component organization and biogenesis;2.68095921158138e-29!GO:0005740;mitochondrial envelope;3.1300194015484e-29!GO:0031981;nuclear lumen;3.92986467880956e-28!GO:0003735;structural constituent of ribosome;4.1232892174472e-28!GO:0008380;RNA splicing;5.77367010076782e-28!GO:0043283;biopolymer metabolic process;1.15313259859478e-27!GO:0031966;mitochondrial membrane;1.42512087586013e-27!GO:0006397;mRNA processing;5.28253842046335e-27!GO:0051649;establishment of cellular localization;3.98562685795137e-26!GO:0006119;oxidative phosphorylation;9.14907684780255e-26!GO:0033279;ribosomal subunit;2.07848381279016e-25!GO:0019866;organelle inner membrane;2.10043230655847e-25!GO:0051641;cellular localization;2.15807889204883e-25!GO:0065003;macromolecular complex assembly;3.78086285736528e-25!GO:0005743;mitochondrial inner membrane;6.9399139431975e-24!GO:0005773;vacuole;2.20227032952854e-22!GO:0012505;endomembrane system;1.74072908563469e-21!GO:0022607;cellular component assembly;1.74943311665277e-21!GO:0010467;gene expression;2.30475231149349e-21!GO:0000323;lytic vacuole;7.13975483679001e-21!GO:0005764;lysosome;7.13975483679001e-21!GO:0005681;spliceosome;1.43483399982153e-20!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.7346584825299e-20!GO:0044248;cellular catabolic process;4.21513076578219e-20!GO:0044265;cellular macromolecule catabolic process;4.54033529388181e-20!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.10776581341619e-19!GO:0005654;nucleoplasm;1.10776581341619e-19!GO:0048770;pigment granule;1.85539149192035e-19!GO:0042470;melanosome;1.85539149192035e-19!GO:0051186;cofactor metabolic process;4.22898726386667e-19!GO:0016192;vesicle-mediated transport;4.46302167727001e-19!GO:0000166;nucleotide binding;5.23342257849896e-19!GO:0005830;cytosolic ribosome (sensu Eukaryota);8.3083301184437e-19!GO:0044455;mitochondrial membrane part;1.7980419435531e-18!GO:0006996;organelle organization and biogenesis;4.76886589521432e-18!GO:0044445;cytosolic part;1.08262331448797e-17!GO:0043285;biopolymer catabolic process;1.09475954648747e-17!GO:0005794;Golgi apparatus;1.30079110689594e-17!GO:0009057;macromolecule catabolic process;1.44051023436974e-17!GO:0016462;pyrophosphatase activity;2.09313732122209e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.11346158250833e-17!GO:0006915;apoptosis;2.4947797655125e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;2.69752873619586e-17!GO:0012501;programmed cell death;2.85039964018993e-17!GO:0005746;mitochondrial respiratory chain;4.3773408243436e-17!GO:0006512;ubiquitin cycle;1.08548414998804e-16!GO:0005783;endoplasmic reticulum;1.15265379914182e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.48344580842049e-16!GO:0017111;nucleoside-triphosphatase activity;1.70980308431698e-16!GO:0006259;DNA metabolic process;3.67697972420741e-16!GO:0008219;cell death;5.40688973396818e-16!GO:0016265;death;5.40688973396818e-16!GO:0006732;coenzyme metabolic process;7.69243269145016e-16!GO:0006605;protein targeting;1.1156100134811e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;1.17206244174246e-15!GO:0044257;cellular protein catabolic process;1.73078814042397e-15!GO:0019941;modification-dependent protein catabolic process;1.97313801350398e-15!GO:0043632;modification-dependent macromolecule catabolic process;1.97313801350398e-15!GO:0006457;protein folding;2.47131268455119e-15!GO:0016874;ligase activity;2.82420827852804e-15!GO:0044432;endoplasmic reticulum part;3.01321469389805e-15!GO:0050136;NADH dehydrogenase (quinone) activity;3.15347672098349e-15!GO:0003954;NADH dehydrogenase activity;3.15347672098349e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.15347672098349e-15!GO:0006511;ubiquitin-dependent protein catabolic process;3.60360059150321e-15!GO:0044451;nucleoplasm part;3.75607894034318e-15!GO:0022618;protein-RNA complex assembly;3.97570700936531e-15!GO:0031980;mitochondrial lumen;5.9968221025518e-15!GO:0005759;mitochondrial matrix;5.9968221025518e-15!GO:0000502;proteasome complex (sensu Eukaryota);1.69277338336375e-14!GO:0017076;purine nucleotide binding;1.72028178791266e-14!GO:0032553;ribonucleotide binding;2.29144555556751e-14!GO:0032555;purine ribonucleotide binding;2.29144555556751e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.54030270456212e-14!GO:0015935;small ribosomal subunit;4.93254844682211e-14!GO:0030163;protein catabolic process;6.82785015458965e-14!GO:0042775;organelle ATP synthesis coupled electron transport;8.15691880025524e-14!GO:0042773;ATP synthesis coupled electron transport;8.15691880025524e-14!GO:0043412;biopolymer modification;1.02487361284097e-13!GO:0009056;catabolic process;1.13201814413192e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.56831740211549e-13!GO:0045271;respiratory chain complex I;1.56831740211549e-13!GO:0005747;mitochondrial respiratory chain complex I;1.56831740211549e-13!GO:0008134;transcription factor binding;1.88081674136367e-13!GO:0005768;endosome;3.35549971780228e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.80049265649121e-13!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.96875206249422e-13!GO:0016787;hydrolase activity;2.22619325469952e-12!GO:0015934;large ribosomal subunit;2.26007828368352e-12!GO:0006464;protein modification process;2.35854754946426e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.75805323516596e-12!GO:0005789;endoplasmic reticulum membrane;4.32439402593881e-12!GO:0048193;Golgi vesicle transport;7.79986850283489e-12!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.17172366942259e-11!GO:0016604;nuclear body;1.20471216936467e-11!GO:0006163;purine nucleotide metabolic process;1.30920877180267e-11!GO:0006913;nucleocytoplasmic transport;1.33083597857059e-11!GO:0009150;purine ribonucleotide metabolic process;1.70537086063896e-11!GO:0009259;ribonucleotide metabolic process;1.88307072364343e-11!GO:0042623;ATPase activity, coupled;1.88307072364343e-11!GO:0016887;ATPase activity;2.08840719962131e-11!GO:0051169;nuclear transport;2.69649927183616e-11!GO:0019829;cation-transporting ATPase activity;3.05255965162698e-11!GO:0051188;cofactor biosynthetic process;3.43378890596321e-11!GO:0015986;ATP synthesis coupled proton transport;3.71078959440837e-11!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.71078959440837e-11!GO:0009055;electron carrier activity;3.76484585254769e-11!GO:0005524;ATP binding;3.81151461686746e-11!GO:0006164;purine nucleotide biosynthetic process;5.01276207483296e-11!GO:0032559;adenyl ribonucleotide binding;5.38551689545042e-11!GO:0030554;adenyl nucleotide binding;5.42060450778307e-11!GO:0015078;hydrogen ion transmembrane transporter activity;5.84354633251058e-11!GO:0009152;purine ribonucleotide biosynthetic process;6.0286504830478e-11!GO:0042981;regulation of apoptosis;7.05387429444409e-11!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);7.06279391753844e-11!GO:0008135;translation factor activity, nucleic acid binding;7.50211057728059e-11!GO:0006974;response to DNA damage stimulus;8.08806355102586e-11!GO:0051082;unfolded protein binding;1.02639611859513e-10!GO:0043067;regulation of programmed cell death;1.15911062313127e-10!GO:0005774;vacuolar membrane;1.8382697749453e-10!GO:0009260;ribonucleotide biosynthetic process;1.89281137517269e-10!GO:0043687;post-translational protein modification;2.49344886630452e-10!GO:0005770;late endosome;3.24790900996707e-10!GO:0043228;non-membrane-bound organelle;3.64318426220625e-10!GO:0043232;intracellular non-membrane-bound organelle;3.64318426220625e-10!GO:0005635;nuclear envelope;4.47605222300074e-10!GO:0005761;mitochondrial ribosome;4.71740909533374e-10!GO:0000313;organellar ribosome;4.71740909533374e-10!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.02446851356947e-10!GO:0009144;purine nucleoside triphosphate metabolic process;5.02446851356947e-10!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.27291295040349e-10!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.27291295040349e-10!GO:0006950;response to stress;6.74785186241563e-10!GO:0009199;ribonucleoside triphosphate metabolic process;7.05952851250812e-10!GO:0006754;ATP biosynthetic process;8.08170055582397e-10!GO:0006753;nucleoside phosphate metabolic process;8.08170055582397e-10!GO:0051246;regulation of protein metabolic process;8.08170055582397e-10!GO:0007249;I-kappaB kinase/NF-kappaB cascade;8.26793330386135e-10!GO:0009142;nucleoside triphosphate biosynthetic process;9.37867251251976e-10!GO:0009201;ribonucleoside triphosphate biosynthetic process;9.37867251251976e-10!GO:0016607;nuclear speck;9.62068045282031e-10!GO:0006413;translational initiation;9.90763594377051e-10!GO:0006461;protein complex assembly;9.93917689838816e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;1.01845428772717e-09!GO:0000375;RNA splicing, via transesterification reactions;1.01845428772717e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.01845428772717e-09!GO:0008639;small protein conjugating enzyme activity;1.03814115642347e-09!GO:0046034;ATP metabolic process;1.0543960831054e-09!GO:0005765;lysosomal membrane;1.31075584308775e-09!GO:0044437;vacuolar part;1.31075584308775e-09!GO:0016469;proton-transporting two-sector ATPase complex;1.47584918320156e-09!GO:0009141;nucleoside triphosphate metabolic process;1.48638275065639e-09!GO:0007049;cell cycle;1.49581456358261e-09!GO:0009108;coenzyme biosynthetic process;1.59247890201809e-09!GO:0005730;nucleolus;1.84182063702025e-09!GO:0003743;translation initiation factor activity;1.88398100691261e-09!GO:0006446;regulation of translational initiation;2.11336902209925e-09!GO:0004842;ubiquitin-protein ligase activity;2.44444016792293e-09!GO:0003676;nucleic acid binding;3.69380406415924e-09!GO:0019787;small conjugating protein ligase activity;3.83034575978302e-09!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;4.22050460004569e-09!GO:0008565;protein transporter activity;4.85358907382213e-09!GO:0009060;aerobic respiration;5.14992820775464e-09!GO:0017038;protein import;6.62231823475378e-09!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.98980324848046e-09!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;7.50410316605507e-09!GO:0044440;endosomal part;7.8588853204159e-09!GO:0010008;endosome membrane;7.8588853204159e-09!GO:0006281;DNA repair;8.89848812160128e-09!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.04733160900369e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;9.88925189928028e-09!GO:0016491;oxidoreductase activity;1.33724116379506e-08!GO:0007243;protein kinase cascade;1.60779234035439e-08!GO:0005793;ER-Golgi intermediate compartment;1.82776042436347e-08!GO:0043069;negative regulation of programmed cell death;4.90127040959259e-08!GO:0045333;cellular respiration;5.51867697552073e-08!GO:0016881;acid-amino acid ligase activity;6.40787281546573e-08!GO:0043066;negative regulation of apoptosis;6.40787281546573e-08!GO:0008047;enzyme activator activity;6.42408012286624e-08!GO:0004386;helicase activity;1.09354067311882e-07!GO:0044453;nuclear membrane part;1.22020311760383e-07!GO:0031965;nuclear membrane;1.27580420185266e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.27580420185266e-07!GO:0006099;tricarboxylic acid cycle;1.306738132558e-07!GO:0046356;acetyl-CoA catabolic process;1.306738132558e-07!GO:0009117;nucleotide metabolic process;1.46561731941948e-07!GO:0006752;group transfer coenzyme metabolic process;1.63969723751923e-07!GO:0009719;response to endogenous stimulus;1.74470838879146e-07!GO:0044262;cellular carbohydrate metabolic process;1.76508015822745e-07!GO:0003712;transcription cofactor activity;1.77093418255649e-07!GO:0006793;phosphorus metabolic process;2.14421070699707e-07!GO:0006796;phosphate metabolic process;2.14421070699707e-07!GO:0009615;response to virus;2.54363947659213e-07!GO:0006916;anti-apoptosis;2.63087888788526e-07!GO:0051187;cofactor catabolic process;2.89114542205894e-07!GO:0044431;Golgi apparatus part;3.27024816683877e-07!GO:0006888;ER to Golgi vesicle-mediated transport;3.37858480748095e-07!GO:0005839;proteasome core complex (sensu Eukaryota);4.09232143567709e-07!GO:0006091;generation of precursor metabolites and energy;4.66539756059623e-07!GO:0031982;vesicle;5.01974724180988e-07!GO:0006084;acetyl-CoA metabolic process;5.22410490442942e-07!GO:0051170;nuclear import;5.49246078477405e-07!GO:0031252;leading edge;5.54260572683718e-07!GO:0016310;phosphorylation;5.63253345474796e-07!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;6.55271770035442e-07!GO:0050657;nucleic acid transport;6.55271770035442e-07!GO:0051236;establishment of RNA localization;6.55271770035442e-07!GO:0050658;RNA transport;6.55271770035442e-07!GO:0005096;GTPase activator activity;6.89728408108741e-07!GO:0008654;phospholipid biosynthetic process;7.67317550727075e-07!GO:0008026;ATP-dependent helicase activity;8.30113368780825e-07!GO:0016070;RNA metabolic process;8.31898593156264e-07!GO:0006403;RNA localization;9.29346270290562e-07!GO:0006606;protein import into nucleus;1.0216731457968e-06!GO:0006818;hydrogen transport;1.15909866979385e-06!GO:0022402;cell cycle process;1.22646487170932e-06!GO:0048475;coated membrane;1.33228141383536e-06!GO:0030117;membrane coat;1.33228141383536e-06!GO:0009109;coenzyme catabolic process;1.35638648866648e-06!GO:0065009;regulation of a molecular function;1.47696985379144e-06!GO:0032446;protein modification by small protein conjugation;1.66006829750973e-06!GO:0005643;nuclear pore;1.77350831468792e-06!GO:0015992;proton transport;2.05491398400227e-06!GO:0007242;intracellular signaling cascade;2.0656130074529e-06!GO:0006417;regulation of translation;2.19561845808329e-06!GO:0016044;membrane organization and biogenesis;2.31992834875814e-06!GO:0004298;threonine endopeptidase activity;2.50064656268707e-06!GO:0016567;protein ubiquitination;2.51719511989652e-06!GO:0031410;cytoplasmic vesicle;2.79852946097423e-06!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;2.83721226934024e-06!GO:0015399;primary active transmembrane transporter activity;2.83721226934024e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.96859301671641e-06!GO:0022890;inorganic cation transmembrane transporter activity;3.03295306539927e-06!GO:0016740;transferase activity;3.08044114951811e-06!GO:0065002;intracellular protein transport across a membrane;3.32888217197538e-06!GO:0031988;membrane-bound vesicle;3.33586579984821e-06!GO:0030120;vesicle coat;3.44351170475359e-06!GO:0030662;coated vesicle membrane;3.44351170475359e-06!GO:0031902;late endosome membrane;3.56026108250467e-06!GO:0045259;proton-transporting ATP synthase complex;3.78629893871016e-06!GO:0007040;lysosome organization and biogenesis;4.39741947166061e-06!GO:0042254;ribosome biogenesis and assembly;4.47866034443918e-06!GO:0051726;regulation of cell cycle;4.64530969948233e-06!GO:0000074;regulation of progression through cell cycle;4.77848598041986e-06!GO:0007264;small GTPase mediated signal transduction;5.44324345570608e-06!GO:0046930;pore complex;5.50482965283747e-06!GO:0003697;single-stranded DNA binding;5.9665248692708e-06!GO:0007033;vacuole organization and biogenesis;5.9665248692708e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;6.40029316259536e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;6.72506911512338e-06!GO:0044255;cellular lipid metabolic process;7.07291893543624e-06!GO:0000151;ubiquitin ligase complex;7.94721942057961e-06!GO:0005525;GTP binding;8.57188268381692e-06!GO:0030695;GTPase regulator activity;9.55887665476277e-06!GO:0005694;chromosome;1.15425434769888e-05!GO:0051276;chromosome organization and biogenesis;1.16806460215657e-05!GO:0043492;ATPase activity, coupled to movement of substances;1.21564237616027e-05!GO:0016023;cytoplasmic membrane-bound vesicle;1.24219063361297e-05!GO:0006643;membrane lipid metabolic process;1.28509549298169e-05!GO:0043566;structure-specific DNA binding;1.34528469523402e-05!GO:0051028;mRNA transport;1.35233571996441e-05!GO:0048523;negative regulation of cellular process;1.3642011923151e-05!GO:0006399;tRNA metabolic process;1.37800055257072e-05!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;1.48215584365559e-05!GO:0019899;enzyme binding;1.62452455403977e-05!GO:0006323;DNA packaging;1.79480699419866e-05!GO:0005975;carbohydrate metabolic process;1.82692668931687e-05!GO:0001726;ruffle;1.84005254567221e-05!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;2.11338972829971e-05!GO:0007005;mitochondrion organization and biogenesis;2.26817224456095e-05!GO:0006613;cotranslational protein targeting to membrane;2.34522856056707e-05!GO:0000139;Golgi membrane;2.58104445566971e-05!GO:0005769;early endosome;2.84272757943073e-05!GO:0005798;Golgi-associated vesicle;2.92695722371442e-05!GO:0030532;small nuclear ribonucleoprotein complex;2.99919630127212e-05!GO:0032940;secretion by cell;3.00337711210803e-05!GO:0031326;regulation of cellular biosynthetic process;3.70889285472209e-05!GO:0016568;chromatin modification;4.87467262308533e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.17782502988198e-05!GO:0004812;aminoacyl-tRNA ligase activity;5.17782502988198e-05!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.17782502988198e-05!GO:0009165;nucleotide biosynthetic process;5.24078367893821e-05!GO:0003713;transcription coactivator activity;6.28154574087356e-05!GO:0043038;amino acid activation;6.2870564547394e-05!GO:0006418;tRNA aminoacylation for protein translation;6.2870564547394e-05!GO:0043039;tRNA aminoacylation;6.2870564547394e-05!GO:0044427;chromosomal part;6.6561879402121e-05!GO:0000245;spliceosome assembly;6.85114800141006e-05!GO:0006650;glycerophospholipid metabolic process;7.30082470299176e-05!GO:0007034;vacuolar transport;7.71658092503847e-05!GO:0048519;negative regulation of biological process;7.8081070849054e-05!GO:0008610;lipid biosynthetic process;8.23344479429922e-05!GO:0009967;positive regulation of signal transduction;8.32127833418264e-05!GO:0006672;ceramide metabolic process;9.17256008385286e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;9.41793581666872e-05!GO:0006612;protein targeting to membrane;9.43002468157231e-05!GO:0016197;endosome transport;9.55641462447726e-05!GO:0016779;nucleotidyltransferase activity;0.000101811233296422!GO:0009889;regulation of biosynthetic process;0.000108007089147594!GO:0043065;positive regulation of apoptosis;0.000120659594513704!GO:0046519;sphingoid metabolic process;0.000142806629940678!GO:0032561;guanyl ribonucleotide binding;0.000146270167818214!GO:0019001;guanyl nucleotide binding;0.000146270167818214!GO:0005885;Arp2/3 protein complex;0.000147085247750729!GO:0045786;negative regulation of progression through cell cycle;0.00015486361736172!GO:0005741;mitochondrial outer membrane;0.000160963279742385!GO:0003924;GTPase activity;0.000166040055361491!GO:0005083;small GTPase regulator activity;0.000167543161893813!GO:0043068;positive regulation of programmed cell death;0.000173460550790314!GO:0016853;isomerase activity;0.000176023411202097!GO:0000278;mitotic cell cycle;0.000184679676323875!GO:0006260;DNA replication;0.000184679676323875!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000188478493336433!GO:0019867;outer membrane;0.000192035654454596!GO:0046467;membrane lipid biosynthetic process;0.000201645911882631!GO:0045454;cell redox homeostasis;0.000217660585948987!GO:0050790;regulation of catalytic activity;0.000217749934737979!GO:0031968;organelle outer membrane;0.000243879515595585!GO:0050794;regulation of cellular process;0.000252872755244653!GO:0007265;Ras protein signal transduction;0.00025666200294528!GO:0045045;secretory pathway;0.00026101040076185!GO:0006364;rRNA processing;0.000267049926432229!GO:0016072;rRNA metabolic process;0.000270815199685937!GO:0005813;centrosome;0.000276903512398573!GO:0003724;RNA helicase activity;0.000280337298503802!GO:0046474;glycerophospholipid biosynthetic process;0.00028098500419953!GO:0006629;lipid metabolic process;0.000282572303702497!GO:0043087;regulation of GTPase activity;0.000301914389026868!GO:0043623;cellular protein complex assembly;0.000308973520064205!GO:0015980;energy derivation by oxidation of organic compounds;0.000326776017264442!GO:0019752;carboxylic acid metabolic process;0.000339144612759154!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000340111086815643!GO:0006644;phospholipid metabolic process;0.000357511263019659!GO:0005788;endoplasmic reticulum lumen;0.000381059161611724!GO:0006082;organic acid metabolic process;0.000403669178374877!GO:0008234;cysteine-type peptidase activity;0.000408428232476746!GO:0051168;nuclear export;0.000408428232476746!GO:0005099;Ras GTPase activator activity;0.000408428232476746!GO:0051336;regulation of hydrolase activity;0.00045479260755436!GO:0006897;endocytosis;0.000460870036200536!GO:0010324;membrane invagination;0.000460870036200536!GO:0030384;phosphoinositide metabolic process;0.000542253236803458!GO:0033116;ER-Golgi intermediate compartment membrane;0.00057130246871425!GO:0007041;lysosomal transport;0.000716343213202554!GO:0046489;phosphoinositide biosynthetic process;0.000741997006225713!GO:0030149;sphingolipid catabolic process;0.000760922832922623!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000785950872495947!GO:0005815;microtubule organizing center;0.000853877614059861!GO:0006333;chromatin assembly or disassembly;0.000953598437875461!GO:0005762;mitochondrial large ribosomal subunit;0.000965339349306663!GO:0000315;organellar large ribosomal subunit;0.000965339349306663!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000976457846221849!GO:0046483;heterocycle metabolic process;0.0010019721174576!GO:0006401;RNA catabolic process;0.0010333840707047!GO:0030867;rough endoplasmic reticulum membrane;0.00107397357340469!GO:0006917;induction of apoptosis;0.00108399304936814!GO:0000785;chromatin;0.00123096373392967!GO:0043021;ribonucleoprotein binding;0.00127910956243203!GO:0006366;transcription from RNA polymerase II promoter;0.00136656195996038!GO:0003729;mRNA binding;0.00138867488598606!GO:0065004;protein-DNA complex assembly;0.0014255503428899!GO:0030036;actin cytoskeleton organization and biogenesis;0.00144854313984401!GO:0012502;induction of programmed cell death;0.00150041840502704!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00157179835582664!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00157179835582664!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00157179835582664!GO:0030027;lamellipodium;0.00165835847821485!GO:0019377;glycolipid catabolic process;0.00166672658058324!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00170940152388294!GO:0051427;hormone receptor binding;0.00177764907556977!GO:0019318;hexose metabolic process;0.0018932092113654!GO:0009607;response to biotic stimulus;0.00189411926235647!GO:0051301;cell division;0.00196170272229516!GO:0008632;apoptotic program;0.00196170272229516!GO:0048522;positive regulation of cellular process;0.00206961474749545!GO:0016564;transcription repressor activity;0.00215257190917451!GO:0030176;integral to endoplasmic reticulum membrane;0.00222438153213298!GO:0005996;monosaccharide metabolic process;0.00223538124625876!GO:0006607;NLS-bearing substrate import into nucleus;0.00232359326185881!GO:0032318;regulation of Ras GTPase activity;0.00232738254111252!GO:0016563;transcription activator activity;0.0024533670306799!GO:0051789;response to protein stimulus;0.00259364585655866!GO:0006986;response to unfolded protein;0.00259364585655866!GO:0000287;magnesium ion binding;0.00259856549706323!GO:0006402;mRNA catabolic process;0.00268181700111021!GO:0008186;RNA-dependent ATPase activity;0.00271984939436336!GO:0031072;heat shock protein binding;0.00271984939436336!GO:0004197;cysteine-type endopeptidase activity;0.00275825596925656!GO:0030118;clathrin coat;0.0029278487924151!GO:0003690;double-stranded DNA binding;0.00309133547914974!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00312192967094347!GO:0035257;nuclear hormone receptor binding;0.00317726802983664!GO:0007006;mitochondrial membrane organization and biogenesis;0.00335103449867198!GO:0030984;kininogen binding;0.00345048361873293!GO:0004213;cathepsin B activity;0.00345048361873293!GO:0050662;coenzyme binding;0.00346473939528599!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00347266205344846!GO:0006310;DNA recombination;0.00354477939801919!GO:0022415;viral reproductive process;0.00363137678281647!GO:0048471;perinuclear region of cytoplasm;0.00364380870068058!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00367777001589568!GO:0042802;identical protein binding;0.00372472563458129!GO:0006891;intra-Golgi vesicle-mediated transport;0.00373924070444767!GO:0000087;M phase of mitotic cell cycle;0.00396867406771151!GO:0002504;antigen processing and presentation of peptide or polysaccharide antigen via MHC class II;0.00401430359311843!GO:0030041;actin filament polymerization;0.00407443248938374!GO:0002376;immune system process;0.00415314600300391!GO:0003714;transcription corepressor activity;0.00416613944048287!GO:0000314;organellar small ribosomal subunit;0.00420112442956793!GO:0005763;mitochondrial small ribosomal subunit;0.00420112442956793!GO:0004177;aminopeptidase activity;0.0042694871764889!GO:0006066;alcohol metabolic process;0.00430310449661926!GO:0022403;cell cycle phase;0.00435872298539103!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00458569901440875!GO:0016126;sterol biosynthetic process;0.00459167302076115!GO:0051252;regulation of RNA metabolic process;0.00512570974940513!GO:0046479;glycosphingolipid catabolic process;0.00516423918733907!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00519370063307927!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00519370063307927!GO:0030658;transport vesicle membrane;0.00520679902664113!GO:0022406;membrane docking;0.00525434487250264!GO:0048278;vesicle docking;0.00525434487250264!GO:0007067;mitosis;0.00526914612256413!GO:0015036;disulfide oxidoreductase activity;0.00528646533423802!GO:0043681;protein import into mitochondrion;0.00537130315168791!GO:0046822;regulation of nucleocytoplasmic transport;0.0055247484062457!GO:0019843;rRNA binding;0.00553882121965758!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00568757938832866!GO:0030029;actin filament-based process;0.00568757938832866!GO:0005905;coated pit;0.00574792515751061!GO:0048487;beta-tubulin binding;0.00585271911849783!GO:0030133;transport vesicle;0.00585992337662669!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00587760231430182!GO:0015002;heme-copper terminal oxidase activity;0.00587760231430182!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00587760231430182!GO:0004129;cytochrome-c oxidase activity;0.00587760231430182!GO:0006302;double-strand break repair;0.0060016808565205!GO:0050789;regulation of biological process;0.00601603522140884!GO:0016859;cis-trans isomerase activity;0.00603361497147907!GO:0005791;rough endoplasmic reticulum;0.00612978503116708!GO:0015631;tubulin binding;0.00623670081573701!GO:0004229;gelatinase B activity;0.0062416391574532!GO:0046466;membrane lipid catabolic process;0.00630111057445108!GO:0005048;signal sequence binding;0.00636228045247915!GO:0042158;lipoprotein biosynthetic process;0.00645505636947644!GO:0006497;protein amino acid lipidation;0.00647239288748519!GO:0006118;electron transport;0.00647239288748519!GO:0006914;autophagy;0.00655875553596896!GO:0048518;positive regulation of biological process;0.00657416512974277!GO:0031901;early endosome membrane;0.00659141830554599!GO:0009966;regulation of signal transduction;0.00659347403431204!GO:0004004;ATP-dependent RNA helicase activity;0.0066359637751029!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0066359637751029!GO:0006767;water-soluble vitamin metabolic process;0.00666593508629419!GO:0048500;signal recognition particle;0.00689777627590626!GO:0006516;glycoprotein catabolic process;0.00746314643595697!GO:0051920;peroxiredoxin activity;0.00761594108376551!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00769110793310779!GO:0006904;vesicle docking during exocytosis;0.00807307409910781!GO:0006733;oxidoreduction coenzyme metabolic process;0.00813283757455717!GO:0030663;COPI coated vesicle membrane;0.00831815478356397!GO:0030126;COPI vesicle coat;0.00831815478356397!GO:0004674;protein serine/threonine kinase activity;0.00841583375695137!GO:0015630;microtubule cytoskeleton;0.00853811777936341!GO:0005667;transcription factor complex;0.0089636946150264!GO:0006778;porphyrin metabolic process;0.00898429899064752!GO:0033013;tetrapyrrole metabolic process;0.00898429899064752!GO:0017166;vinculin binding;0.00900452994237126!GO:0006383;transcription from RNA polymerase III promoter;0.00912147775700189!GO:0016363;nuclear matrix;0.00998816899723535!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.010171059554289!GO:0000096;sulfur amino acid metabolic process;0.010302956149324!GO:0006611;protein export from nucleus;0.0103431125960314!GO:0004185;serine carboxypeptidase activity;0.0103933730467203!GO:0003725;double-stranded RNA binding;0.0108077726752778!GO:0006414;translational elongation;0.0108656099763211!GO:0048002;antigen processing and presentation of peptide antigen;0.0108656099763211!GO:0043488;regulation of mRNA stability;0.0110564471518491!GO:0043487;regulation of RNA stability;0.0110564471518491!GO:0006007;glucose catabolic process;0.0113951296571078!GO:0042168;heme metabolic process;0.0115713644887973!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0117027308184845!GO:0045047;protein targeting to ER;0.0117027308184845!GO:0000209;protein polyubiquitination;0.0123992906979146!GO:0030660;Golgi-associated vesicle membrane;0.0124409712930924!GO:0030134;ER to Golgi transport vesicle;0.0129161251942798!GO:0051235;maintenance of localization;0.0129493702518117!GO:0051287;NAD binding;0.0130112146733403!GO:0019079;viral genome replication;0.0131904666284528!GO:0006665;sphingolipid metabolic process;0.0133681661382981!GO:0030137;COPI-coated vesicle;0.0133681661382981!GO:0006769;nicotinamide metabolic process;0.0137015866053282!GO:0042613;MHC class II protein complex;0.0139049096685687!GO:0008139;nuclear localization sequence binding;0.0151486690474391!GO:0004192;cathepsin D activity;0.0151735794269731!GO:0006839;mitochondrial transport;0.015202581494524!GO:0006740;NADPH regeneration;0.0156035827582054!GO:0006098;pentose-phosphate shunt;0.0156035827582054!GO:0005869;dynactin complex;0.0158465708384344!GO:0030119;AP-type membrane coat adaptor complex;0.0159801316778086!GO:0005777;peroxisome;0.0159801316778086!GO:0042579;microbody;0.0159801316778086!GO:0044275;cellular carbohydrate catabolic process;0.0163652296691301!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0163681350086903!GO:0031625;ubiquitin protein ligase binding;0.0163681350086903!GO:0016125;sterol metabolic process;0.0165387801356956!GO:0006689;ganglioside catabolic process;0.0168138037377508!GO:0019904;protein domain specific binding;0.0168152352459154!GO:0006626;protein targeting to mitochondrion;0.0170075584506135!GO:0031324;negative regulation of cellular metabolic process;0.0175084516565473!GO:0030127;COPII vesicle coat;0.0175684115252352!GO:0012507;ER to Golgi transport vesicle membrane;0.0175684115252352!GO:0000118;histone deacetylase complex;0.0175684115252352!GO:0004518;nuclease activity;0.0175916675597714!GO:0004563;beta-N-acetylhexosaminidase activity;0.0176025938160987!GO:0044438;microbody part;0.0177390430750351!GO:0044439;peroxisomal part;0.0177390430750351!GO:0035035;histone acetyltransferase binding;0.0178023918473559!GO:0016860;intramolecular oxidoreductase activity;0.0179249490046561!GO:0006635;fatty acid beta-oxidation;0.0179788081749452!GO:0000059;protein import into nucleus, docking;0.0180172438295714!GO:0006006;glucose metabolic process;0.0180355895610939!GO:0016798;hydrolase activity, acting on glycosyl bonds;0.0181016158586674!GO:0006955;immune response;0.0187630674746495!GO:0006509;membrane protein ectodomain proteolysis;0.0187630674746495!GO:0033619;membrane protein proteolysis;0.0187630674746495!GO:0019058;viral infectious cycle;0.0189369479990033!GO:0051540;metal cluster binding;0.0189815329997767!GO:0051536;iron-sulfur cluster binding;0.0189815329997767!GO:0006695;cholesterol biosynthetic process;0.0190751669533634!GO:0003711;transcription elongation regulator activity;0.0190751669533634!GO:0030132;clathrin coat of coated pit;0.0193166330256729!GO:0051539;4 iron, 4 sulfur cluster binding;0.0204301622116762!GO:0006749;glutathione metabolic process;0.0204964937866913!GO:0007050;cell cycle arrest;0.0204964937866913!GO:0051219;phosphoprotein binding;0.0204964937866913!GO:0006506;GPI anchor biosynthetic process;0.0205850530583179!GO:0051452;cellular pH reduction;0.0208401889672885!GO:0051453;regulation of cellular pH;0.0208401889672885!GO:0045851;pH reduction;0.0208401889672885!GO:0008312;7S RNA binding;0.0216664806395326!GO:0051090;regulation of transcription factor activity;0.0218226907222236!GO:0004553;hydrolase activity, hydrolyzing O-glycosyl compounds;0.0218226907222236!GO:0005637;nuclear inner membrane;0.0218226907222236!GO:0030131;clathrin adaptor complex;0.0218226907222236!GO:0015923;mannosidase activity;0.0219199692287903!GO:0009112;nucleobase metabolic process;0.0220972860192709!GO:0019362;pyridine nucleotide metabolic process;0.0224071039875035!GO:0000339;RNA cap binding;0.0224071039875035!GO:0016408;C-acyltransferase activity;0.0224071039875035!GO:0033033;negative regulation of myeloid cell apoptosis;0.0224071039875035!GO:0001803;regulation of type III hypersensitivity;0.0224071039875035!GO:0032733;positive regulation of interleukin-10 production;0.0224071039875035!GO:0033025;regulation of mast cell apoptosis;0.0224071039875035!GO:0001805;positive regulation of type III hypersensitivity;0.0224071039875035!GO:0033023;mast cell homeostasis;0.0224071039875035!GO:0002431;Fc receptor mediated stimulatory signaling pathway;0.0224071039875035!GO:0033032;regulation of myeloid cell apoptosis;0.0224071039875035!GO:0001802;type III hypersensitivity;0.0224071039875035!GO:0033028;myeloid cell apoptosis;0.0224071039875035!GO:0042590;antigen processing and presentation of exogenous peptide antigen via MHC class I;0.0224071039875035!GO:0033026;negative regulation of mast cell apoptosis;0.0224071039875035!GO:0033024;mast cell apoptosis;0.0224071039875035!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0224742244594302!GO:0051098;regulation of binding;0.0233673907383467!GO:0050749;apolipoprotein E receptor binding;0.0234396882123779!GO:0045309;protein phosphorylated amino acid binding;0.0237422388285058!GO:0004576;oligosaccharyl transferase activity;0.0238083574261217!GO:0030518;steroid hormone receptor signaling pathway;0.0247042914904452!GO:0031903;microbody membrane;0.0253106517087103!GO:0005778;peroxisomal membrane;0.0253106517087103!GO:0006807;nitrogen compound metabolic process;0.0256593897912785!GO:0008250;oligosaccharyl transferase complex;0.0258597024722214!GO:0005684;U2-dependent spliceosome;0.0262478033448672!GO:0032787;monocarboxylic acid metabolic process;0.0262836935690129!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0264470637350416!GO:0006458;'de novo' protein folding;0.0265814920878639!GO:0051084;'de novo' posttranslational protein folding;0.0265814920878639!GO:0006661;phosphatidylinositol biosynthetic process;0.0271201582000576!GO:0008017;microtubule binding;0.0273273925146362!GO:0045185;maintenance of protein localization;0.0273273925146362!GO:0006505;GPI anchor metabolic process;0.0279705279961704!GO:0016251;general RNA polymerase II transcription factor activity;0.0281806471352148!GO:0003899;DNA-directed RNA polymerase activity;0.0284437428550229!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0289973984931291!GO:0016584;nucleosome positioning;0.0290282902686469!GO:0000279;M phase;0.0292260893722693!GO:0005758;mitochondrial intermembrane space;0.0293070285797193!GO:0030145;manganese ion binding;0.0295903598412251!GO:0006979;response to oxidative stress;0.0296197690785895!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0297117187169699!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0302812203376274!GO:0031497;chromatin assembly;0.030298506377297!GO:0008637;apoptotic mitochondrial changes;0.0304216117224905!GO:0006739;NADP metabolic process;0.0307588761165537!GO:0004218;cathepsin S activity;0.0314082483243639!GO:0051881;regulation of mitochondrial membrane potential;0.0314589641852114!GO:0006013;mannose metabolic process;0.0314589641852114!GO:0006954;inflammatory response;0.0314589641852114!GO:0006334;nucleosome assembly;0.0317357943853728!GO:0051087;chaperone binding;0.0318790464178257!GO:0006289;nucleotide-excision repair;0.0318884037707399!GO:0051223;regulation of protein transport;0.0319254829974844!GO:0030503;regulation of cell redox homeostasis;0.0322121905971132!GO:0006261;DNA-dependent DNA replication;0.0325598412336811!GO:0031301;integral to organelle membrane;0.032748751700361!GO:0006352;transcription initiation;0.0328981055403635!GO:0019747;regulation of isoprenoid metabolic process;0.0331368739317682!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0333093664830247!GO:0000303;response to superoxide;0.0342744255731168!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0343531610257779!GO:0006631;fatty acid metabolic process;0.034364318974827!GO:0050811;GABA receptor binding;0.0346168163897538!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0351853434912277!GO:0046983;protein dimerization activity;0.0355586669069564!GO:0035258;steroid hormone receptor binding;0.0357980449300533!GO:0042157;lipoprotein metabolic process;0.0360882572094481!GO:0030880;RNA polymerase complex;0.0364083743021944!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0369804061068191!GO:0046456;icosanoid biosynthetic process;0.0373180136580565!GO:0006779;porphyrin biosynthetic process;0.0373466029735421!GO:0033014;tetrapyrrole biosynthetic process;0.0373466029735421!GO:0032428;beta-N-acetylgalactosaminidase activity;0.0378738403550903!GO:0030290;sphingolipid activator protein activity;0.0378738403550903!GO:0030125;clathrin vesicle coat;0.0386671239802386!GO:0030665;clathrin coated vesicle membrane;0.0386671239802386!GO:0005784;translocon complex;0.038834506303983!GO:0006622;protein targeting to lysosome;0.0388692849013678!GO:0001784;phosphotyrosine binding;0.0392268955917074!GO:0006405;RNA export from nucleus;0.0392846121203376!GO:0000305;response to oxygen radical;0.0395958091487052!GO:0048037;cofactor binding;0.0399845575779408!GO:0001573;ganglioside metabolic process;0.0403709791737151!GO:0009892;negative regulation of metabolic process;0.0408166160809185!GO:0016788;hydrolase activity, acting on ester bonds;0.0410287960366074!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0410395219829604!GO:0065007;biological regulation;0.0410395219829604!GO:0032507;maintenance of cellular protein localization;0.0410664678309168!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0411481633417563!GO:0010257;NADH dehydrogenase complex assembly;0.0411481633417563!GO:0033108;mitochondrial respiratory chain complex assembly;0.0411481633417563!GO:0006213;pyrimidine nucleoside metabolic process;0.0415890232470804!GO:0051092;activation of NF-kappaB transcription factor;0.0416787833781729!GO:0043022;ribosome binding;0.0418064776274111!GO:0051329;interphase of mitotic cell cycle;0.0419857441548942!GO:0012506;vesicle membrane;0.0423028492593253!GO:0007021;tubulin folding;0.0425195196808043!GO:0051348;negative regulation of transferase activity;0.0425501499495961!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0429140000228148!GO:0006790;sulfur metabolic process;0.0429140000228148!GO:0006595;polyamine metabolic process;0.0429140000228148!GO:0004214;dipeptidyl-peptidase I activity;0.0439385731151862!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0442494359369581!GO:0033673;negative regulation of kinase activity;0.0446350811374809!GO:0006469;negative regulation of protein kinase activity;0.0446350811374809!GO:0000776;kinetochore;0.0457254341326302!GO:0004448;isocitrate dehydrogenase activity;0.0459587015618139!GO:0032763;regulation of mast cell cytokine production;0.0461752432255219!GO:0032762;mast cell cytokine production;0.0461752432255219!GO:0006487;protein amino acid N-linked glycosylation;0.0465062300790032!GO:0031970;organelle envelope lumen;0.0468429457128413!GO:0031124;mRNA 3'-end processing;0.0472656138971902!GO:0005832;chaperonin-containing T-complex;0.047362873238186!GO:0048468;cell development;0.0474776773570617!GO:0005819;spindle;0.0479206178407897!GO:0046578;regulation of Ras protein signal transduction;0.0480777059490156!GO:0006633;fatty acid biosynthetic process;0.0483054069242396!GO:0009116;nucleoside metabolic process;0.0483318185866533!GO:0016581;NuRD complex;0.0484657697841076!GO:0051101;regulation of DNA binding;0.04860131473429!GO:0006783;heme biosynthetic process;0.04860131473429!GO:0006376;mRNA splice site selection;0.04860131473429!GO:0000389;nuclear mRNA 3'-splice site recognition;0.04860131473429!GO:0005484;SNAP receptor activity;0.0491436949239079!GO:0046365;monosaccharide catabolic process;0.0491436949239079 | |||
|sample_id=11232 | |sample_id=11232 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=blood | |sample_tissue=blood | ||
|top_motifs=SREBF1,2:3.09831561731;TLX2:2.48189132438;EN1,2:1.55078913761;DMAP1_NCOR{1,2}_SMARC:1.45664623848;IRF7:1.38963132374;NANOG{mouse}:1.37278052407;NFIL3:1.32344214389;IKZF2:1.20435257384;IRF1,2:1.18864103593;SPI1:1.17170892253;RXRA_VDR{dimer}:1.16680821388;SPIB:1.16001521488;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.14202058528;FOXP3:1.0201396426;NFE2L2:1.01385546955;ELF1,2,4:0.99880034751;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.958708833325;ETS1,2:0.885785038505;MTF1:0.7126040269;TGIF1:0.696383442865;NR6A1:0.657724417338;ARID5B:0.65639988131;TFCP2:0.630222322841;FOXP1:0.614770323863;STAT1,3:0.612062174828;TFAP4:0.585194408586;PDX1:0.576098402944;FOXO1,3,4:0.557294064147;HMGA1,2:0.534335201292;AR:0.504804935629;HMX1:0.497970578835;HLF:0.490530555866;ZBTB16:0.489646688398;PAX8:0.479360585032;HNF4A_NR2F1,2:0.46181450088;ESRRA:0.45208630115;NKX2-2,8:0.409213398721;STAT2,4,6:0.399699083469;HBP1_HMGB_SSRP1_UBTF:0.362480744557;ALX1:0.349819722471;NKX3-2:0.339404922809;PAX2:0.317815212075;RUNX1..3:0.308604469194;CDX1,2,4:0.293456731439;FOXD3:0.287955564441;FOXA2:0.251086505275;PAX1,9:0.24062209068;EBF1:0.215940242108;VSX1,2:0.207716096998;MAFB:0.186326323105;POU5F1:0.179644324175;FOX{F1,F2,J1}:0.134082498478;HES1:0.131439220691;OCT4_SOX2{dimer}:0.126233192768;FOSL2:0.111084715487;PAX4:0.0856691544223;EP300:0.0836355320324;NKX2-3_NKX2-5:0.0783259623016;ESR1:0.0759532636382;CEBPA,B_DDIT3:0.0711432806756;FOX{D1,D2}:0.066167491975;NHLH1,2:0.0586211902062;CUX2:0.0345917545554;NFE2:0.0327028171116;PRRX1,2:0.0234312005202;HAND1,2:-0.0193495148705;HOXA9_MEIS1:-0.0295858654038;PRDM1:-0.0351714022794;GATA6:-0.0364943164442;GZF1:-0.0517457410192;GLI1..3:-0.059052308626;NRF1:-0.0624124897641;SMAD1..7,9:-0.0802589675067;LHX3,4:-0.0941576894117;ELK1,4_GABP{A,B1}:-0.0997459703344;FOXN1:-0.10131338893;NFKB1_REL_RELA:-0.106985523684;YY1:-0.108361985207;PITX1..3:-0.112310861187;NFIX:-0.116166372819;MYB:-0.166715247681;ZNF143:-0.172381343075;RFX2..5_RFXANK_RFXAP:-0.173679721982;STAT5{A,B}:-0.184423901167;KLF4:-0.190685529834;MYOD1:-0.191525874757;TAL1_TCF{3,4,12}:-0.194602271194;ADNP_IRX_SIX_ZHX:-0.211628491703;MYFfamily:-0.221315750291;XCPE1{core}:-0.235026145706;ZFP161:-0.242416217098;NKX6-1,2:-0.257782649903;SP1:-0.271035747038;HSF1,2:-0.275195871677;GATA4:-0.295022895747;SOX2:-0.305916405087;FOS_FOS{B,L1}_JUN{B,D}:-0.325685313978;DBP:-0.330177962546;ALX4:-0.343591801078;PPARG:-0.352200327412;TOPORS:-0.363012488564;POU1F1:-0.364898463669;CRX:-0.37071308231;BACH2:-0.372968446677;RXR{A,B,G}:-0.379419884232;HIF1A:-0.388772518683;HNF1A:-0.389584524697;PAX6:-0.390429570394;RORA:-0.390779683639;FOX{I1,J2}:-0.422954017388;GFI1B:-0.429523691067;NR3C1:-0.434330293779;ATF2:-0.438910358107;NR5A1,2:-0.441976351814;REST:-0.443288040306;TBP:-0.455029649919;BPTF:-0.471335293083;NFY{A,B,C}:-0.491318355897;ATF5_CREB3:-0.497070432106;FOXQ1:-0.503688822868;TEF:-0.525235730946;SOX{8,9,10}:-0.525852194361;SPZ1:-0.527953103298;HOX{A4,D4}:-0.53183823312;LMO2:-0.554729601735;POU3F1..4:-0.567977338934;ZNF148:-0.573698259256;MYBL2:-0.582046251488;E2F1..5:-0.583030176135;ZEB1:-0.592729355468;bHLH_family:-0.607575384784;PAX5:-0.613904756291;ZNF238:-0.618800749178;NANOG:-0.636605365167;NFE2L1:-0.659627051641;AIRE:-0.664656446074;T:-0.6674846198;NKX3-1:-0.671341374696;MAZ:-0.68054873382;ATF4:-0.691064860088;MEF2{A,B,C,D}:-0.697569948914;CREB1:-0.698854773611;PAX3,7:-0.716158703061;GFI1:-0.716179871816;EGR1..3:-0.745691456262;GTF2I:-0.750405989317;MZF1:-0.786367328602;TLX1..3_NFIC{dimer}:-0.795348149604;FOXM1:-0.813841553804;HOX{A5,B5}:-0.822087743823;TFAP2{A,C}:-0.82812447156;MED-1{core}:-0.831650307352;UFEwm:-0.83229389269;AHR_ARNT_ARNT2:-0.838568012562;SOX5:-0.846973184041;GCM1,2:-0.848467134397;SNAI1..3:-0.86080512263;GTF2A1,2:-0.862461848941;IKZF1:-0.86770233158;TFDP1:-0.870625512459;ZNF423:-0.899977163532;NFATC1..3:-0.926465083972;SOX17:-0.965016713303;RREB1:-0.98500236034;HIC1:-0.987872617537;TP53:-0.991760303258;NR1H4:-0.995127233286;CDC5L:-1.00891968862;TEAD1:-1.0141512199;TFAP2B:-1.03130282713;ONECUT1,2:-1.03882335821;BREu{core}:-1.06044457172;ZBTB6:-1.06936636519;HOX{A6,A7,B6,B7}:-1.09807847233;SRF:-1.12095581557;MTE{core}:-1.12222444646;PATZ1:-1.13251730147;EVI1:-1.20917756269;RFX1:-1.21649880544;ZNF384:-1.24116759761;POU6F1:-1.25556593739;XBP1:-1.3765358254;ATF6:-1.3924984309;JUN:-1.39494138147;PBX1:-1.40478574177;POU2F1..3:-1.46767627996;RBPJ:-1.48493116813;ZIC1..3:-1.50733258449;FOXL1:-1.56845920767;TBX4,5:-1.60113337623;LEF1_TCF7_TCF7L1,2:-1.61273751071;NKX2-1,4:-2.48286086686 | |top_motifs=SREBF1,2:3.09831561731;TLX2:2.48189132438;EN1,2:1.55078913761;DMAP1_NCOR{1,2}_SMARC:1.45664623848;IRF7:1.38963132374;NANOG{mouse}:1.37278052407;NFIL3:1.32344214389;IKZF2:1.20435257384;IRF1,2:1.18864103593;SPI1:1.17170892253;RXRA_VDR{dimer}:1.16680821388;SPIB:1.16001521488;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.14202058528;FOXP3:1.0201396426;NFE2L2:1.01385546955;ELF1,2,4:0.99880034751;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.958708833325;ETS1,2:0.885785038505;MTF1:0.7126040269;TGIF1:0.696383442865;NR6A1:0.657724417338;ARID5B:0.65639988131;TFCP2:0.630222322841;FOXP1:0.614770323863;STAT1,3:0.612062174828;TFAP4:0.585194408586;PDX1:0.576098402944;FOXO1,3,4:0.557294064147;HMGA1,2:0.534335201292;AR:0.504804935629;HMX1:0.497970578835;HLF:0.490530555866;ZBTB16:0.489646688398;PAX8:0.479360585032;HNF4A_NR2F1,2:0.46181450088;ESRRA:0.45208630115;NKX2-2,8:0.409213398721;STAT2,4,6:0.399699083469;HBP1_HMGB_SSRP1_UBTF:0.362480744557;ALX1:0.349819722471;NKX3-2:0.339404922809;PAX2:0.317815212075;RUNX1..3:0.308604469194;CDX1,2,4:0.293456731439;FOXD3:0.287955564441;FOXA2:0.251086505275;PAX1,9:0.24062209068;EBF1:0.215940242108;VSX1,2:0.207716096998;MAFB:0.186326323105;POU5F1:0.179644324175;FOX{F1,F2,J1}:0.134082498478;HES1:0.131439220691;OCT4_SOX2{dimer}:0.126233192768;FOSL2:0.111084715487;PAX4:0.0856691544223;EP300:0.0836355320324;NKX2-3_NKX2-5:0.0783259623016;ESR1:0.0759532636382;CEBPA,B_DDIT3:0.0711432806756;FOX{D1,D2}:0.066167491975;NHLH1,2:0.0586211902062;CUX2:0.0345917545554;NFE2:0.0327028171116;PRRX1,2:0.0234312005202;HAND1,2:-0.0193495148705;HOXA9_MEIS1:-0.0295858654038;PRDM1:-0.0351714022794;GATA6:-0.0364943164442;GZF1:-0.0517457410192;GLI1..3:-0.059052308626;NRF1:-0.0624124897641;SMAD1..7,9:-0.0802589675067;LHX3,4:-0.0941576894117;ELK1,4_GABP{A,B1}:-0.0997459703344;FOXN1:-0.10131338893;NFKB1_REL_RELA:-0.106985523684;YY1:-0.108361985207;PITX1..3:-0.112310861187;NFIX:-0.116166372819;MYB:-0.166715247681;ZNF143:-0.172381343075;RFX2..5_RFXANK_RFXAP:-0.173679721982;STAT5{A,B}:-0.184423901167;KLF4:-0.190685529834;MYOD1:-0.191525874757;TAL1_TCF{3,4,12}:-0.194602271194;ADNP_IRX_SIX_ZHX:-0.211628491703;MYFfamily:-0.221315750291;XCPE1{core}:-0.235026145706;ZFP161:-0.242416217098;NKX6-1,2:-0.257782649903;SP1:-0.271035747038;HSF1,2:-0.275195871677;GATA4:-0.295022895747;SOX2:-0.305916405087;FOS_FOS{B,L1}_JUN{B,D}:-0.325685313978;DBP:-0.330177962546;ALX4:-0.343591801078;PPARG:-0.352200327412;TOPORS:-0.363012488564;POU1F1:-0.364898463669;CRX:-0.37071308231;BACH2:-0.372968446677;RXR{A,B,G}:-0.379419884232;HIF1A:-0.388772518683;HNF1A:-0.389584524697;PAX6:-0.390429570394;RORA:-0.390779683639;FOX{I1,J2}:-0.422954017388;GFI1B:-0.429523691067;NR3C1:-0.434330293779;ATF2:-0.438910358107;NR5A1,2:-0.441976351814;REST:-0.443288040306;TBP:-0.455029649919;BPTF:-0.471335293083;NFY{A,B,C}:-0.491318355897;ATF5_CREB3:-0.497070432106;FOXQ1:-0.503688822868;TEF:-0.525235730946;SOX{8,9,10}:-0.525852194361;SPZ1:-0.527953103298;HOX{A4,D4}:-0.53183823312;LMO2:-0.554729601735;POU3F1..4:-0.567977338934;ZNF148:-0.573698259256;MYBL2:-0.582046251488;E2F1..5:-0.583030176135;ZEB1:-0.592729355468;bHLH_family:-0.607575384784;PAX5:-0.613904756291;ZNF238:-0.618800749178;NANOG:-0.636605365167;NFE2L1:-0.659627051641;AIRE:-0.664656446074;T:-0.6674846198;NKX3-1:-0.671341374696;MAZ:-0.68054873382;ATF4:-0.691064860088;MEF2{A,B,C,D}:-0.697569948914;CREB1:-0.698854773611;PAX3,7:-0.716158703061;GFI1:-0.716179871816;EGR1..3:-0.745691456262;GTF2I:-0.750405989317;MZF1:-0.786367328602;TLX1..3_NFIC{dimer}:-0.795348149604;FOXM1:-0.813841553804;HOX{A5,B5}:-0.822087743823;TFAP2{A,C}:-0.82812447156;MED-1{core}:-0.831650307352;UFEwm:-0.83229389269;AHR_ARNT_ARNT2:-0.838568012562;SOX5:-0.846973184041;GCM1,2:-0.848467134397;SNAI1..3:-0.86080512263;GTF2A1,2:-0.862461848941;IKZF1:-0.86770233158;TFDP1:-0.870625512459;ZNF423:-0.899977163532;NFATC1..3:-0.926465083972;SOX17:-0.965016713303;RREB1:-0.98500236034;HIC1:-0.987872617537;TP53:-0.991760303258;NR1H4:-0.995127233286;CDC5L:-1.00891968862;TEAD1:-1.0141512199;TFAP2B:-1.03130282713;ONECUT1,2:-1.03882335821;BREu{core}:-1.06044457172;ZBTB6:-1.06936636519;HOX{A6,A7,B6,B7}:-1.09807847233;SRF:-1.12095581557;MTE{core}:-1.12222444646;PATZ1:-1.13251730147;EVI1:-1.20917756269;RFX1:-1.21649880544;ZNF384:-1.24116759761;POU6F1:-1.25556593739;XBP1:-1.3765358254;ATF6:-1.3924984309;JUN:-1.39494138147;PBX1:-1.40478574177;POU2F1..3:-1.46767627996;RBPJ:-1.48493116813;ZIC1..3:-1.50733258449;FOXL1:-1.56845920767;TBX4,5:-1.60113337623;LEF1_TCF7_TCF7L1,2:-1.61273751071;NKX2-1,4:-2.48286086686 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11232-116C8;search_select_hide=table117:FF:11232-116C8 | |||
}} | }} | ||
Latest revision as of 16:26, 3 June 2020
| Name: | Macrophage - monocyte derived, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10861 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10861
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10861
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.134 |
| 10 | 10 | 0.0209 |
| 100 | 100 | 0.946 |
| 101 | 101 | 0.254 |
| 102 | 102 | 0.791 |
| 103 | 103 | 0.198 |
| 104 | 104 | 0.972 |
| 105 | 105 | 0.486 |
| 106 | 106 | 0.207 |
| 107 | 107 | 0.453 |
| 108 | 108 | 0.732 |
| 109 | 109 | 0.0212 |
| 11 | 11 | 0.0613 |
| 110 | 110 | 0.186 |
| 111 | 111 | 0.0258 |
| 112 | 112 | 0.094 |
| 113 | 113 | 0.706 |
| 114 | 114 | 0.03 |
| 115 | 115 | 0.309 |
| 116 | 116 | 0.736 |
| 117 | 117 | 0.0233 |
| 118 | 118 | 0.213 |
| 119 | 119 | 0.123 |
| 12 | 12 | 0.513 |
| 120 | 120 | 0.391 |
| 121 | 121 | 0.568 |
| 122 | 122 | 0.879 |
| 123 | 123 | 0.271 |
| 124 | 124 | 0.346 |
| 125 | 125 | 0.363 |
| 126 | 126 | 0.194 |
| 127 | 127 | 0.19 |
| 128 | 128 | 0.105 |
| 129 | 129 | 0.639 |
| 13 | 13 | 0.036 |
| 130 | 130 | 0.577 |
| 131 | 131 | 0.884 |
| 132 | 132 | 0.533 |
| 133 | 133 | 0.842 |
| 134 | 134 | 0.675 |
| 135 | 135 | 0.0792 |
| 136 | 136 | 0.749 |
| 137 | 137 | 0.0173 |
| 138 | 138 | 0.073 |
| 139 | 139 | 0.0825 |
| 14 | 14 | 0.267 |
| 140 | 140 | 0.417 |
| 141 | 141 | 0.618 |
| 142 | 142 | 0.183 |
| 143 | 143 | 0.289 |
| 144 | 144 | 0.46 |
| 145 | 145 | 0.356 |
| 146 | 146 | 0.834 |
| 147 | 147 | 0.316 |
| 148 | 148 | 0.0815 |
| 149 | 149 | 0.516 |
| 15 | 15 | 0.178 |
| 150 | 150 | 0.467 |
| 151 | 151 | 0.782 |
| 152 | 152 | 0.258 |
| 153 | 153 | 0.886 |
| 154 | 154 | 0.884 |
| 155 | 155 | 0.182 |
| 156 | 156 | 0.899 |
| 157 | 157 | 0.773 |
| 158 | 158 | 0.677 |
| 159 | 159 | 0.229 |
| 16 | 16 | 0.232 |
| 160 | 160 | 0.535 |
| 161 | 161 | 0.658 |
| 162 | 162 | 0.625 |
| 163 | 163 | 0.71 |
| 164 | 164 | 0.186 |
| 165 | 165 | 0.268 |
| 166 | 166 | 0.752 |
| 167 | 167 | 0.558 |
| 168 | 168 | 0.722 |
| 169 | 169 | 0.0052 |
| 17 | 17 | 0.238 |
| 18 | 18 | 0.375 |
| 19 | 19 | 0.159 |
| 2 | 2 | 0.944 |
| 20 | 20 | 0.831 |
| 21 | 21 | 0.433 |
| 22 | 22 | 0.18 |
| 23 | 23 | 0.336 |
| 24 | 24 | 0.069 |
| 25 | 25 | 0.521 |
| 26 | 26 | 0.0847 |
| 27 | 27 | 0.197 |
| 28 | 28 | 0.641 |
| 29 | 29 | 0.226 |
| 3 | 3 | 0.0191 |
| 30 | 30 | 0.605 |
| 31 | 31 | 0.581 |
| 32 | 32 | 0.658 |
| 33 | 33 | 0.446 |
| 34 | 34 | 0.24 |
| 35 | 35 | 0.397 |
| 36 | 36 | 0.14 |
| 37 | 37 | 0.112 |
| 38 | 38 | 0.0635 |
| 39 | 39 | 0.772 |
| 4 | 4 | 0.995 |
| 40 | 40 | 0.147 |
| 41 | 41 | 0.286 |
| 42 | 42 | 0.414 |
| 43 | 43 | 0.0845 |
| 44 | 44 | 0.0923 |
| 45 | 45 | 0.71 |
| 46 | 46 | 0.193 |
| 47 | 47 | 0.265 |
| 48 | 48 | 0.196 |
| 49 | 49 | 0.205 |
| 5 | 5 | 0.289 |
| 50 | 50 | 0.792 |
| 51 | 51 | 0.565 |
| 52 | 52 | 0.366 |
| 53 | 53 | 0.226 |
| 54 | 54 | 0.417 |
| 55 | 55 | 0.0584 |
| 56 | 56 | 0.558 |
| 57 | 57 | 0.562 |
| 58 | 58 | 0.141 |
| 59 | 59 | 0.179 |
| 6 | 6 | 0.208 |
| 60 | 60 | 0.118 |
| 61 | 61 | 0.153 |
| 62 | 62 | 0.134 |
| 63 | 63 | 0.286 |
| 64 | 64 | 0.279 |
| 65 | 65 | 0.0823 |
| 66 | 66 | 0.981 |
| 67 | 67 | 0.338 |
| 68 | 68 | 0.946 |
| 69 | 69 | 0.582 |
| 7 | 7 | 0.202 |
| 70 | 70 | 0.0194 |
| 71 | 71 | 0.0582 |
| 72 | 72 | 0.189 |
| 73 | 73 | 0.0376 |
| 74 | 74 | 0.878 |
| 75 | 75 | 0.0168 |
| 76 | 76 | 0.216 |
| 77 | 77 | 0.224 |
| 78 | 78 | 0.0604 |
| 79 | 79 | 0.255 |
| 8 | 8 | 0.134 |
| 80 | 80 | 0.408 |
| 81 | 81 | 0.253 |
| 82 | 82 | 0.142 |
| 83 | 83 | 0.974 |
| 84 | 84 | 0.465 |
| 85 | 85 | 0.0604 |
| 86 | 86 | 0.0546 |
| 87 | 87 | 0.0929 |
| 88 | 88 | 0.244 |
| 89 | 89 | 0.152 |
| 9 | 9 | 0.412 |
| 90 | 90 | 0.0228 |
| 91 | 91 | 0.749 |
| 92 | 92 | 0.0962 |
| 93 | 93 | 0.859 |
| 94 | 94 | 0.0949 |
| 95 | 95 | 0.149 |
| 96 | 96 | 0.243 |
| 97 | 97 | 0.867 |
| 98 | 98 | 0.463 |
| 99 | 99 | 0.746 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10861
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000086 human macrophage sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0000255 (eukaryotic cell)
0000235 (macrophage)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000086 (human macrophage sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
