FF:11221-116B6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005665 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008293;DRR009165;DRZ000590;DRZ001975;DRZ011940;DRZ013325 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0000344,UBERON:0004121,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0005911,UBERON:0004923,UBERON:0000161,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0010371,UBERON:0003350,UBERON:0003929,UBERON:0000486,UBERON:0004807,UBERON:0003729,UBERON:0010317,UBERON:0001555,UBERON:0001828,UBERON:0001949,UBERON:0001004,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0000166 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002251,CL:0002621 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000254 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Gingival%2520epithelial%2520cells%252c%2520donor1%2520%2528GEA11%2529.CNhs11061.11221-116B6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Gingival%2520epithelial%2520cells%252c%2520donor1%2520%2528GEA11%2529.CNhs11061.11221-116B6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Gingival%2520epithelial%2520cells%252c%2520donor1%2520%2528GEA11%2529.CNhs11061.11221-116B6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Gingival%2520epithelial%2520cells%252c%2520donor1%2520%2528GEA11%2529.CNhs11061.11221-116B6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Gingival%2520epithelial%2520cells%252c%2520donor1%2520%2528GEA11%2529.CNhs11061.11221-116B6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11221-116B6 | |id=FF:11221-116B6 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000254 | ||
|is_obsolete= | |||
|library_id=CNhs11061 | |||
|library_id_phase_based=2:CNhs11061 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11221 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11221 | |||
|name=Gingival epithelial cells, donor1 (GEA11) | |name=Gingival epithelial cells, donor1 (GEA11) | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11061,LSID723,release008,COMPLETED | |profile_hcage=CNhs11061,LSID723,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0.0383676965652315,0,0,0.0382792848982543,0,0.155486402134178,-0.244035864011711,0,0,0,0,0,0,0,0,0.467254093700476,0,0.832370018125145,0,0,0.140327711052501,0,0,0,0.295471760962802,0,-0.0212225031375944,0,0,-0.0562211966483992,0,0,0,0,0,0,0,0,0,0,1.10022062525416,0,0.126414441430893,0,0,0,1.3766641844315,0,0,0,0,0.075083636379486,0,0,0,0,0,0,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.085741911877457,0,0,0,0.0182885663186379,0.0493147442251337,0,0.0767353931304631,0.09929865749232,0,-0.0980353512377064,-0.100109504235663,0,0,0,0.0767353931304631,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0580058973572295,0,0,0,0.0960393278425696,0.289537228777635,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0.0767353931304631,0,-0.0980353512377064,0,0,0,0.19859731498464,0,0,0,0,0.0767353931304631,0,0,-0.10525220233521,0,-0.474086218752008,0.150135578877457,0,0,-0.224342482084119,0,0,0,0,0,0,0,0,0.0767353931304631,0.503874995018583,0,-0.0504125515893149,0,0,0,0,0,-0.305472230898407,0,-0.103294724674332,-0.0683442610773682,0,0.0671781088392811,0,0,-0.00375885974860275,0,-0.0441440906632776,-0.0827201683234173,0.149978217469721,0.709123770372617,0.0210228963492811,0,0,0,0.457558480076073,0.435597116207055,0,0,-0.0834121551866425,-0.110386282085482,0,0,-0.314309188421172,0,0.320149843457562,0.328291765714845,0,-0.0633667762418417,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,-0.185061923728614,-0.0304099808375785,0,0.141926672950355,0.0302095500503304,-0.0383715296299146,0,0,-0.296550762826104,-0.0209126071304714,-0.094839191068896,-0.22017532229264,0,-0.302389727009913,-0.0460665077279006,0.148191351798436,0.012019481931256,-0.147401849371139,-0.0480550465994928,0.0767353931304631,-0.104875957212266,-0.38039941946311,-0.028110200690618,0.0704116407467312,-0.0613939145368184,0.201403946352272,0.0877611371810851,0,0,0,0.203816001633112,0,0,0.0309095793652313,0.177933397959369,0.0407209709948325,0.320446672368922,0.0544336240219705,-0.123246172588633,-0.0395325284566706,-0.208717083542205,0,-0.297212640226505,0,0,0.0376066267521473,0.0542813701888373,-0.0988098858789721,-0.00387211854355352,0,0.0370468320310242,-0.0683442610773682,0,0.063253574828144,-0.0524511513636068,0,0.117944206476778,-0.0838064039084485,0,0.19859731498464,0,0,0,-0.0853191910558808,-0.397565470079812,-0.0909288886051903,0,-0.066561676436272,0.0602915726521111,0.173231839556874,0,-0.123641557988689,0.130313810003064,0,-0.215898411465773,0,0.0631529442676647,0.263187981914637,-0.0130039726295863,0.0986294884502674,0.0182885663186379,-0.098477071804583,-0.0043607933961658,0.137799906419122,0.132429872188508,-0.101149586566375,-0.0881268324752877,0,-0.314680125005154,0.15287188650362,-0.100189040037094,-0.040774184385293,0.0260593685238724,-0.201066383171795,0,-0.211975040999219,0,-0.0863124071739173,0.210711384028515,-0.439289374580686,-0.0592563307768801,0,-4.50056749263794e-05,0.638440396362742,0.182999720452397,0.0557606571800893,-0.0649032739197044,0.494970826962964,0.0482302316500011,-0.085741911877457,-0.0130531128799488,0.0846688854903202,0,-0.120581394876048,0,0,-0.0365725688185865,-0.158740644633926,0,0.0401435839617283,0.0778993070149541,0.0828861800330557,-0.039235680304471,0.19859731498464,0,0.210686980566307,0,0,0.562024606444961,0,-0.285417019771831,-0.0547290265021153,-0.007752722925353,0.109165887721386,0,0,0.228345443685726,0,-0.064144232122607,0,0,0.362601112151365,0.0553018673652693,0,0,0,0,0,0,0,0,0,0,0,-0.223337708133273,-0.0204670260296451,0,0.0715531324241885,0,0,0,0,0,0.0214587590686912,0,0,1.07495961793022,-0.0178862589919926,0.170633305724509,0,0,0,0,-0.215723402553475,-0.00463924711008334,0,0.0100639664527228,0.0767353931304631,0.0383676965652315,0,0,-0.0861409897892114,0,0.19859731498464,0,0.0383676965652315,0.0190049360767991,0.017460901282817,0,0,0,-0.27695440160179,0,0,0,0,-0.0461244680386879,0,0,-0.0199761187512543,0,-0.151507864247112,-0.00484648641637836,0,-0.139015147212188,0.231074557012832,0.792880440704504,0,0.0767353931304631,-0.261347131789888,0,0,-0.191399649216118,0,0.0767353931304631,-0.0089924758455686,0,0,0,0,0,0,-0.137579119269293,0,0,0,0,0,0,0,0,0,0,0,0.130740829740066,0.0497026162918441,0.293650721400929,0,0,0,0,0,0,0.117820649871452,0.248695386598883,0,0,0.008479350324003,0,0,0,0,0,-0.137059635476439,0,0,0,0,0,-0.0969923612426051,0,0,0,0,-0.488071728023421,0,0,0.217608694769449,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752782289491927,0.155486402134178,0,0,0,0,0,0,0,-0.132906625255736,0,0,0,0,-0.113884373708977,0.0767353931304631,0,0,0.188854336611772,0,0.0382792848982543,0,0,0,0,0,0.0767353931304631,0.0383676965652315,0,0,0,0,0,0,0,0,0,0,0.167183152093402,0,0,0,-0.18770137879625,0,0,-0.032682149517401,0,0,0.102121029123763,0,0,0,0,0,0,0.0396229124466502,0.038681329021705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0578582747247717,0,0,0,0,0,0,0,-0.0212225031375944,0,0,-0.0920328098005262,0,0,0,0,0,0,0.0989839268040418,0.480654834030519,-0.0934267865108862,0,0,0,0.112797579610946,0,0,0,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0.19859731498464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140327711052501,0,0,0,0,0,0,0,0,0,0,0,0,0.0383676965652315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0383676965652315,0,0,0,0,0,0,-0.0340113632754165,0.0767353931304631,0,0.0767353931304631,0,0,0,0,0.248719369354389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.00328307513817533,0,0,0,0.192786979993858,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163435758562832,0,0,0,0,0,0,0,0,1.10022062525416,0,0.0072284085211096,0,0,-0.0482220752390542,0,-0.00764123909956405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.473768649385249,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,0.01010041246125,0,0,0,0,0,0,0,0,0,0,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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=N/A | |rna_catalog_number=N/A | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=4.73132 | |rna_weight_ug=4.73132 | ||
|sample_age=61 | |sample_age=61 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=A | |sample_ethnicity=A | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.09160992396885e-215!GO:0005737;cytoplasm;1.91791404247699e-207!GO:0043226;organelle;5.03865579027612e-156!GO:0043229;intracellular organelle;2.01060489736316e-155!GO:0043231;intracellular membrane-bound organelle;5.83280444932323e-142!GO:0043227;membrane-bound organelle;7.59151977782178e-142!GO:0044444;cytoplasmic part;2.43946365231267e-138!GO:0044422;organelle part;1.21015320236915e-128!GO:0044446;intracellular organelle part;3.21907689161592e-127!GO:0032991;macromolecular complex;1.29435850930278e-86!GO:0030529;ribonucleoprotein complex;7.13118930973521e-78!GO:0005515;protein binding;1.7365711348989e-72!GO:0044238;primary metabolic process;3.08494110392672e-69!GO:0044237;cellular metabolic process;9.1097145643677e-68!GO:0005739;mitochondrion;4.43924648454528e-63!GO:0043170;macromolecule metabolic process;8.31588809810368e-61!GO:0043233;organelle lumen;7.42240066675525e-59!GO:0031974;membrane-enclosed lumen;7.42240066675525e-59!GO:0019538;protein metabolic process;3.01325645559192e-58!GO:0003723;RNA binding;8.37164805631007e-56!GO:0031090;organelle membrane;4.8481405208053e-54!GO:0044428;nuclear part;3.55388550819616e-53!GO:0044267;cellular protein metabolic process;5.38199288554141e-51!GO:0044260;cellular macromolecule metabolic process;1.92972972287555e-50!GO:0005840;ribosome;1.09833944504958e-48!GO:0006412;translation;1.68221101649707e-48!GO:0015031;protein transport;2.23053519206736e-47!GO:0033036;macromolecule localization;1.11221856868316e-46!GO:0016043;cellular component organization and biogenesis;2.96942234158538e-45!GO:0045184;establishment of protein localization;1.68846049660789e-44!GO:0009058;biosynthetic process;3.05916888735141e-44!GO:0008104;protein localization;5.21634083326536e-44!GO:0005829;cytosol;5.55364400839351e-44!GO:0043234;protein complex;4.0824885689707e-43!GO:0003735;structural constituent of ribosome;6.42548745658469e-43!GO:0044429;mitochondrial part;1.34007427027557e-41!GO:0005634;nucleus;4.67119997015342e-40!GO:0006396;RNA processing;2.39067001807758e-39!GO:0009059;macromolecule biosynthetic process;3.11572130840659e-39!GO:0044249;cellular biosynthetic process;4.54371321692831e-39!GO:0046907;intracellular transport;2.26561658395497e-38!GO:0033279;ribosomal subunit;7.70241092013775e-36!GO:0031967;organelle envelope;7.70241092013775e-36!GO:0031975;envelope;1.40971032867096e-35!GO:0031981;nuclear lumen;1.99297317287055e-33!GO:0043228;non-membrane-bound organelle;2.5090760143789e-32!GO:0043232;intracellular non-membrane-bound organelle;2.5090760143789e-32!GO:0006886;intracellular protein transport;2.30209240954638e-31!GO:0016071;mRNA metabolic process;9.39233891922166e-31!GO:0008380;RNA splicing;8.08120378071728e-30!GO:0065003;macromolecular complex assembly;9.93354652663598e-30!GO:0043283;biopolymer metabolic process;4.30186593395976e-27!GO:0005740;mitochondrial envelope;6.07453528746021e-27!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.13858720449933e-27!GO:0006397;mRNA processing;1.99180983816372e-26!GO:0022607;cellular component assembly;2.17568243448556e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);9.67229894126504e-26!GO:0006996;organelle organization and biogenesis;9.92081304361995e-26!GO:0051649;establishment of cellular localization;1.98763049539059e-25!GO:0051641;cellular localization;2.53758919940635e-25!GO:0031966;mitochondrial membrane;3.0263146625926e-25!GO:0012505;endomembrane system;7.71765728926862e-24!GO:0019866;organelle inner membrane;1.06604194911627e-23!GO:0044445;cytosolic part;8.23814845807512e-23!GO:0005743;mitochondrial inner membrane;1.90633177036044e-22!GO:0005783;endoplasmic reticulum;6.15606892437646e-22!GO:0010467;gene expression;1.0280835188733e-21!GO:0005681;spliceosome;1.64039044050242e-21!GO:0006119;oxidative phosphorylation;2.52986800024237e-21!GO:0005654;nucleoplasm;4.3463283748533e-19!GO:0016462;pyrophosphatase activity;4.3463283748533e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.04912095451692e-19!GO:0044455;mitochondrial membrane part;5.04912095451692e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;7.26531511733994e-19!GO:0048770;pigment granule;7.73032517740324e-19!GO:0042470;melanosome;7.73032517740324e-19!GO:0005794;Golgi apparatus;8.50904004043587e-19!GO:0017111;nucleoside-triphosphatase activity;1.7055070711198e-18!GO:0015935;small ribosomal subunit;2.08282273312062e-18!GO:0043285;biopolymer catabolic process;2.10826007480185e-18!GO:0015934;large ribosomal subunit;2.25737394221757e-18!GO:0016874;ligase activity;2.66713198814871e-18!GO:0000166;nucleotide binding;3.84305980368628e-18!GO:0006457;protein folding;4.63672464434867e-18!GO:0044432;endoplasmic reticulum part;5.42848437667698e-18!GO:0031980;mitochondrial lumen;1.22524902683329e-17!GO:0005759;mitochondrial matrix;1.22524902683329e-17!GO:0012501;programmed cell death;1.40407256571983e-17!GO:0006915;apoptosis;3.06954023056769e-17!GO:0030163;protein catabolic process;3.06954023056769e-17!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.7660842978763e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;3.98255664131356e-17!GO:0006512;ubiquitin cycle;5.21992763254415e-17!GO:0022618;protein-RNA complex assembly;6.86997418173823e-17!GO:0019941;modification-dependent protein catabolic process;8.20733297826146e-17!GO:0043632;modification-dependent macromolecule catabolic process;8.20733297826146e-17!GO:0044257;cellular protein catabolic process;1.03951913237525e-16!GO:0009057;macromolecule catabolic process;1.50713268911141e-16!GO:0006511;ubiquitin-dependent protein catabolic process;1.52891278517138e-16!GO:0044265;cellular macromolecule catabolic process;5.52016875496008e-16!GO:0051186;cofactor metabolic process;6.0407941306771e-16!GO:0000502;proteasome complex (sensu Eukaryota);6.10554587135586e-16!GO:0006605;protein targeting;6.78549383887646e-16!GO:0005730;nucleolus;7.28820191903169e-16!GO:0043412;biopolymer modification;8.86133277286385e-16!GO:0044451;nucleoplasm part;1.3046030585171e-15!GO:0008219;cell death;1.56429280179658e-15!GO:0016265;death;1.56429280179658e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.3578072241771e-15!GO:0044248;cellular catabolic process;4.00352375921085e-15!GO:0016192;vesicle-mediated transport;6.24652985096983e-15!GO:0005746;mitochondrial respiratory chain;7.91374578024957e-15!GO:0006464;protein modification process;1.11442212191789e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.94605666101331e-14!GO:0005761;mitochondrial ribosome;2.70166549718272e-14!GO:0000313;organellar ribosome;2.70166549718272e-14!GO:0005789;endoplasmic reticulum membrane;5.37177158885758e-14!GO:0050136;NADH dehydrogenase (quinone) activity;5.62996506824655e-14!GO:0003954;NADH dehydrogenase activity;5.62996506824655e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;5.62996506824655e-14!GO:0006259;DNA metabolic process;5.97881229398735e-14!GO:0048193;Golgi vesicle transport;6.66001598613381e-14!GO:0007049;cell cycle;1.46847126889409e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.55850319844291e-13!GO:0017076;purine nucleotide binding;1.85806179828718e-13!GO:0008134;transcription factor binding;1.99664017715568e-13!GO:0032553;ribonucleotide binding;2.32856765955016e-13!GO:0032555;purine ribonucleotide binding;2.32856765955016e-13!GO:0051082;unfolded protein binding;2.79554086195118e-13!GO:0006732;coenzyme metabolic process;2.79554086195118e-13!GO:0043067;regulation of programmed cell death;2.94929168915335e-13!GO:0042981;regulation of apoptosis;3.5008406540642e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.3004250397842e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.62946343245156e-13!GO:0008135;translation factor activity, nucleic acid binding;2.05902945117294e-12!GO:0043687;post-translational protein modification;2.52503138478163e-12!GO:0009055;electron carrier activity;2.62572253608537e-12!GO:0030964;NADH dehydrogenase complex (quinone);3.29806890048497e-12!GO:0045271;respiratory chain complex I;3.29806890048497e-12!GO:0005747;mitochondrial respiratory chain complex I;3.29806890048497e-12!GO:0042775;organelle ATP synthesis coupled electron transport;4.39074790635497e-12!GO:0042773;ATP synthesis coupled electron transport;4.39074790635497e-12!GO:0019787;small conjugating protein ligase activity;6.09892963544286e-12!GO:0008639;small protein conjugating enzyme activity;6.16974281943181e-12!GO:0004842;ubiquitin-protein ligase activity;9.37344883552094e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;9.95685398824345e-12!GO:0006461;protein complex assembly;1.64295918003448e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;1.80920985689645e-11!GO:0000375;RNA splicing, via transesterification reactions;1.80920985689645e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.80920985689645e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.6445936908476e-11!GO:0009056;catabolic process;3.25115634897341e-11!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.55746106911687e-11!GO:0006413;translational initiation;6.58015290970249e-11!GO:0042254;ribosome biogenesis and assembly;7.7627981170313e-11!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;9.74398089047263e-11!GO:0016881;acid-amino acid ligase activity;1.22004628999586e-10!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.49108403579544e-10!GO:0006446;regulation of translational initiation;2.11540760433491e-10!GO:0003743;translation initiation factor activity;2.62851175568384e-10!GO:0009259;ribonucleotide metabolic process;2.82613048939785e-10!GO:0008565;protein transporter activity;3.97538845991177e-10!GO:0006913;nucleocytoplasmic transport;4.4681916699009e-10!GO:0048523;negative regulation of cellular process;6.02409829879749e-10!GO:0051246;regulation of protein metabolic process;6.96748364530269e-10!GO:0005524;ATP binding;8.33147273949931e-10!GO:0043069;negative regulation of programmed cell death;8.40063073150173e-10!GO:0005768;endosome;9.19246540212115e-10!GO:0051169;nuclear transport;9.93541474949993e-10!GO:0009141;nucleoside triphosphate metabolic process;1.02363621269051e-09!GO:0005635;nuclear envelope;1.02363621269051e-09!GO:0030554;adenyl nucleotide binding;1.1942956331721e-09!GO:0032559;adenyl ribonucleotide binding;1.20674003937946e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.34524525116271e-09!GO:0044431;Golgi apparatus part;1.35757790145659e-09!GO:0006163;purine nucleotide metabolic process;1.4753501140042e-09!GO:0009150;purine ribonucleotide metabolic process;1.79448384213805e-09!GO:0005793;ER-Golgi intermediate compartment;1.93332648799071e-09!GO:0022402;cell cycle process;2.09758331674806e-09!GO:0043066;negative regulation of apoptosis;2.3920100316843e-09!GO:0009199;ribonucleoside triphosphate metabolic process;3.02189087203071e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.26726895334324e-09!GO:0016604;nuclear body;3.41261021515829e-09!GO:0003924;GTPase activity;4.90664565114378e-09!GO:0016787;hydrolase activity;5.37298539348929e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.53690289762158e-09!GO:0009144;purine nucleoside triphosphate metabolic process;5.53690289762158e-09!GO:0006974;response to DNA damage stimulus;8.43844069406327e-09!GO:0009260;ribonucleotide biosynthetic process;8.45981679159833e-09!GO:0009142;nucleoside triphosphate biosynthetic process;9.55944618330921e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;9.55944618330921e-09!GO:0048475;coated membrane;9.65585014010884e-09!GO:0030117;membrane coat;9.65585014010884e-09!GO:0007005;mitochondrion organization and biogenesis;1.12922139679467e-08!GO:0048519;negative regulation of biological process;1.37129034081332e-08!GO:0031965;nuclear membrane;1.49983473674917e-08!GO:0006916;anti-apoptosis;1.5404358086678e-08!GO:0006164;purine nucleotide biosynthetic process;1.54137380765169e-08!GO:0006399;tRNA metabolic process;1.58275604183903e-08!GO:0015986;ATP synthesis coupled proton transport;1.58275604183903e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.58275604183903e-08!GO:0051188;cofactor biosynthetic process;1.71927066658684e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.72900891658126e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.72900891658126e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.83782996634263e-08!GO:0030120;vesicle coat;2.05076986271371e-08!GO:0030662;coated vesicle membrane;2.05076986271371e-08!GO:0000074;regulation of progression through cell cycle;2.05764543504042e-08!GO:0017038;protein import;2.34098062562207e-08!GO:0016887;ATPase activity;2.45749266268327e-08!GO:0044453;nuclear membrane part;2.47358521936883e-08!GO:0051726;regulation of cell cycle;2.57835715137243e-08!GO:0042623;ATPase activity, coupled;3.41312189298129e-08!GO:0005773;vacuole;4.22477679430333e-08!GO:0000278;mitotic cell cycle;4.38429627133114e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;6.56606173644009e-08!GO:0016491;oxidoreductase activity;8.26709776004521e-08!GO:0046034;ATP metabolic process;1.00266351295576e-07!GO:0003712;transcription cofactor activity;1.33276084538092e-07!GO:0009060;aerobic respiration;1.46837823071009e-07!GO:0000139;Golgi membrane;1.72535191569198e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.8333914746014e-07!GO:0019829;cation-transporting ATPase activity;2.26664702674743e-07!GO:0048522;positive regulation of cellular process;2.39320246790071e-07!GO:0016607;nuclear speck;2.72021282152613e-07!GO:0006754;ATP biosynthetic process;2.79594148450815e-07!GO:0006753;nucleoside phosphate metabolic process;2.79594148450815e-07!GO:0007243;protein kinase cascade;3.19012215473305e-07!GO:0000323;lytic vacuole;3.29221203537202e-07!GO:0005764;lysosome;3.29221203537202e-07!GO:0005525;GTP binding;4.09470364799075e-07!GO:0009108;coenzyme biosynthetic process;4.34838278101294e-07!GO:0006364;rRNA processing;4.46471879365563e-07!GO:0009967;positive regulation of signal transduction;5.34030943949843e-07!GO:0009117;nucleotide metabolic process;5.41145261756131e-07!GO:0016072;rRNA metabolic process;5.73802648521792e-07!GO:0032446;protein modification by small protein conjugation;6.17970537951121e-07!GO:0045333;cellular respiration;7.23739942269185e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;7.24778697740582e-07!GO:0004812;aminoacyl-tRNA ligase activity;7.24778697740582e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;7.24778697740582e-07!GO:0015078;hydrogen ion transmembrane transporter activity;7.24778697740582e-07!GO:0016567;protein ubiquitination;7.47802942699282e-07!GO:0004386;helicase activity;8.70676973938237e-07!GO:0043038;amino acid activation;1.02355729541095e-06!GO:0006418;tRNA aminoacylation for protein translation;1.02355729541095e-06!GO:0043039;tRNA aminoacylation;1.02355729541095e-06!GO:0005643;nuclear pore;1.04929596660582e-06!GO:0065002;intracellular protein transport across a membrane;1.16434881465896e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.21174596206783e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.26877590681031e-06!GO:0006281;DNA repair;1.40649345556251e-06!GO:0006099;tricarboxylic acid cycle;1.67400377584833e-06!GO:0046356;acetyl-CoA catabolic process;1.67400377584833e-06!GO:0006752;group transfer coenzyme metabolic process;1.70687640097316e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.94936140594453e-06!GO:0003676;nucleic acid binding;2.12245947570095e-06!GO:0008026;ATP-dependent helicase activity;2.14616996915697e-06!GO:0005770;late endosome;2.50656937854073e-06!GO:0016740;transferase activity;2.81128611948638e-06!GO:0051170;nuclear import;3.31622373962251e-06!GO:0009719;response to endogenous stimulus;3.33514208263417e-06!GO:0016070;RNA metabolic process;3.88960941825519e-06!GO:0031988;membrane-bound vesicle;3.9851362609477e-06!GO:0044440;endosomal part;4.1243785597856e-06!GO:0010008;endosome membrane;4.1243785597856e-06!GO:0016023;cytoplasmic membrane-bound vesicle;4.25876734242822e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.40158371337581e-06!GO:0051187;cofactor catabolic process;4.40210570316375e-06!GO:0006084;acetyl-CoA metabolic process;5.3740498153805e-06!GO:0031252;leading edge;6.44059759427544e-06!GO:0045259;proton-transporting ATP synthase complex;8.36307602908984e-06!GO:0006606;protein import into nucleus;8.84370372556899e-06!GO:0006793;phosphorus metabolic process;9.48298605146945e-06!GO:0006796;phosphate metabolic process;9.48298605146945e-06!GO:0042802;identical protein binding;1.0240974583009e-05!GO:0005798;Golgi-associated vesicle;1.06361714560479e-05!GO:0032561;guanyl ribonucleotide binding;1.21360059437844e-05!GO:0019001;guanyl nucleotide binding;1.21360059437844e-05!GO:0004298;threonine endopeptidase activity;1.34259583182569e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;1.53929434026924e-05!GO:0043623;cellular protein complex assembly;1.57535417972478e-05!GO:0009109;coenzyme catabolic process;1.58116761502442e-05!GO:0008654;phospholipid biosynthetic process;1.80487790628914e-05!GO:0006366;transcription from RNA polymerase II promoter;1.80874162616251e-05!GO:0050657;nucleic acid transport;1.80874162616251e-05!GO:0051236;establishment of RNA localization;1.80874162616251e-05!GO:0050658;RNA transport;1.80874162616251e-05!GO:0006613;cotranslational protein targeting to membrane;1.82959773138526e-05!GO:0046930;pore complex;2.1280175908396e-05!GO:0031982;vesicle;2.26083153837713e-05!GO:0000245;spliceosome assembly;2.30484191702302e-05!GO:0006403;RNA localization;2.35430939453989e-05!GO:0000087;M phase of mitotic cell cycle;2.73442339162846e-05!GO:0016779;nucleotidyltransferase activity;2.88443719978269e-05!GO:0016126;sterol biosynthetic process;2.99977817892602e-05!GO:0065009;regulation of a molecular function;3.32630595160794e-05!GO:0005762;mitochondrial large ribosomal subunit;3.42078541634607e-05!GO:0000315;organellar large ribosomal subunit;3.42078541634607e-05!GO:0048518;positive regulation of biological process;3.42078541634607e-05!GO:0006323;DNA packaging;3.55525431476531e-05!GO:0031410;cytoplasmic vesicle;3.73293079655573e-05!GO:0016853;isomerase activity;3.7482631480441e-05!GO:0007067;mitosis;3.7744342212125e-05!GO:0030118;clathrin coat;3.86532719414969e-05!GO:0043065;positive regulation of apoptosis;3.99219506815101e-05!GO:0045454;cell redox homeostasis;4.95361590922508e-05!GO:0007264;small GTPase mediated signal transduction;5.34381768589592e-05!GO:0005788;endoplasmic reticulum lumen;5.46836045118036e-05!GO:0043068;positive regulation of programmed cell death;5.55361673625607e-05!GO:0003724;RNA helicase activity;5.71904659715196e-05!GO:0045786;negative regulation of progression through cell cycle;5.91323258394505e-05!GO:0048468;cell development;5.98301912335584e-05!GO:0051276;chromosome organization and biogenesis;6.45817329647466e-05!GO:0016310;phosphorylation;6.58869885575638e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;7.95893341764318e-05!GO:0030867;rough endoplasmic reticulum membrane;7.96450612755669e-05!GO:0000151;ubiquitin ligase complex;8.58667963489706e-05!GO:0006091;generation of precursor metabolites and energy;9.13941530815445e-05!GO:0008632;apoptotic program;0.000100613832268037!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00010363149768878!GO:0050794;regulation of cellular process;0.000116000604690185!GO:0019899;enzyme binding;0.000117685477445093!GO:0016044;membrane organization and biogenesis;0.000119234408444087!GO:0005905;coated pit;0.000125909495287086!GO:0005769;early endosome;0.000135452386264484!GO:0006612;protein targeting to membrane;0.000137551364873468!GO:0007010;cytoskeleton organization and biogenesis;0.000140174117609758!GO:0031968;organelle outer membrane;0.000143686366105902!GO:0065004;protein-DNA complex assembly;0.00015908690122328!GO:0030036;actin cytoskeleton organization and biogenesis;0.000175051020809163!GO:0000314;organellar small ribosomal subunit;0.000175293007737887!GO:0005763;mitochondrial small ribosomal subunit;0.000175293007737887!GO:0005694;chromosome;0.000178201545150078!GO:0006979;response to oxidative stress;0.000182262262392801!GO:0030119;AP-type membrane coat adaptor complex;0.000182965177020408!GO:0008092;cytoskeletal protein binding;0.000183749133001069!GO:0043021;ribonucleoprotein binding;0.000185899291111681!GO:0019867;outer membrane;0.000190681841859682!GO:0022403;cell cycle phase;0.000211867693569543!GO:0015630;microtubule cytoskeleton;0.000232757116788504!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000245869533068333!GO:0008610;lipid biosynthetic process;0.000253079418909756!GO:0051301;cell division;0.000266591150619501!GO:0005885;Arp2/3 protein complex;0.000278327014156996!GO:0030131;clathrin adaptor complex;0.000322903549562192!GO:0048471;perinuclear region of cytoplasm;0.000332236882624337!GO:0001726;ruffle;0.000332236882624337!GO:0051028;mRNA transport;0.000332946229396226!GO:0051789;response to protein stimulus;0.000343607974027299!GO:0006986;response to unfolded protein;0.000343607974027299!GO:0051427;hormone receptor binding;0.000352331929234488!GO:0005667;transcription factor complex;0.000352331929234488!GO:0006260;DNA replication;0.000382091690287664!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000382110585447539!GO:0005741;mitochondrial outer membrane;0.000415882215403329!GO:0030658;transport vesicle membrane;0.000421551926314905!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000435644906789825!GO:0016197;endosome transport;0.000444340579217007!GO:0043566;structure-specific DNA binding;0.000467052250850199!GO:0006839;mitochondrial transport;0.00047057122265622!GO:0030029;actin filament-based process;0.000476164413204209!GO:0006695;cholesterol biosynthetic process;0.00050496049257713!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00052423573281271!GO:0000785;chromatin;0.000549255214822794!GO:0016859;cis-trans isomerase activity;0.000564060132440751!GO:0005791;rough endoplasmic reticulum;0.000604436914372815!GO:0003714;transcription corepressor activity;0.000614060932958882!GO:0003697;single-stranded DNA binding;0.000653389480155637!GO:0035257;nuclear hormone receptor binding;0.000653389480155637!GO:0030132;clathrin coat of coated pit;0.000655981754779554!GO:0003713;transcription coactivator activity;0.000705564924212399!GO:0033116;ER-Golgi intermediate compartment membrane;0.000715325886874349!GO:0030176;integral to endoplasmic reticulum membrane;0.000776004063880171!GO:0006333;chromatin assembly or disassembly;0.000820074480685909!GO:0031324;negative regulation of cellular metabolic process;0.000841349931401485!GO:0008186;RNA-dependent ATPase activity;0.000841349931401485!GO:0008250;oligosaccharyl transferase complex;0.000855261238477521!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000856469429838764!GO:0006917;induction of apoptosis;0.000868619454345935!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000893717282172564!GO:0016564;transcription repressor activity;0.000901016652144309!GO:0051920;peroxiredoxin activity;0.000918895647626797!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000943827237844797!GO:0030125;clathrin vesicle coat;0.00102688925696085!GO:0030665;clathrin coated vesicle membrane;0.00102688925696085!GO:0006626;protein targeting to mitochondrion;0.00104432422038315!GO:0044427;chromosomal part;0.00110584228130819!GO:0030133;transport vesicle;0.00111499227934718!GO:0030660;Golgi-associated vesicle membrane;0.00111961874539093!GO:0004576;oligosaccharyl transferase activity;0.00114427646580194!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00116325352819169!GO:0009892;negative regulation of metabolic process;0.00116325352819169!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00116816317023312!GO:0003899;DNA-directed RNA polymerase activity;0.00119438922635959!GO:0012502;induction of programmed cell death;0.00124622398297032!GO:0005813;centrosome;0.00124622398297032!GO:0001533;cornified envelope;0.00128196050278167!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00130653707890607!GO:0005048;signal sequence binding;0.00132323057785147!GO:0009165;nucleotide biosynthetic process;0.00135205231148116!GO:0051252;regulation of RNA metabolic process;0.00136433527126321!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00170935660056794!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00170935660056794!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00170935660056794!GO:0007242;intracellular signaling cascade;0.00192011107307429!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00196254872282039!GO:0051101;regulation of DNA binding;0.0019636358896376!GO:0051168;nuclear export;0.0019636358896376!GO:0046467;membrane lipid biosynthetic process;0.00204954984803137!GO:0004004;ATP-dependent RNA helicase activity;0.00210375866890708!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00221629284146067!GO:0015399;primary active transmembrane transporter activity;0.00221629284146067!GO:0050790;regulation of catalytic activity;0.00223277435856761!GO:0005856;cytoskeleton;0.00234889415256251!GO:0018196;peptidyl-asparagine modification;0.00246706771565154!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00246706771565154!GO:0030216;keratinocyte differentiation;0.00252725424911568!GO:0043681;protein import into mitochondrion;0.00263407285051479!GO:0006950;response to stress;0.00267959360858539!GO:0006891;intra-Golgi vesicle-mediated transport;0.00281468594167899!GO:0005774;vacuolar membrane;0.00286175208628539!GO:0007006;mitochondrial membrane organization and biogenesis;0.00286175208628539!GO:0030880;RNA polymerase complex;0.00286175208628539!GO:0016568;chromatin modification;0.00287810520829229!GO:0046489;phosphoinositide biosynthetic process;0.00292099819093554!GO:0044452;nucleolar part;0.00298996347857189!GO:0030031;cell projection biogenesis;0.00320669659699403!GO:0051098;regulation of binding;0.00334835363488799!GO:0000279;M phase;0.00334835363488799!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00346883721681879!GO:0006383;transcription from RNA polymerase III promoter;0.00348152669324271!GO:0015980;energy derivation by oxidation of organic compounds;0.00351515175437684!GO:0016363;nuclear matrix;0.00355270462645388!GO:0048500;signal recognition particle;0.003577068760596!GO:0008243;plasminogen activator activity;0.0035876415536775!GO:0044255;cellular lipid metabolic process;0.00362674246464013!GO:0031072;heat shock protein binding;0.00369026590215075!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00369780785839463!GO:0019843;rRNA binding;0.00369780785839463!GO:0008637;apoptotic mitochondrial changes;0.0037124108341881!GO:0006417;regulation of translation;0.00374141259425973!GO:0006402;mRNA catabolic process;0.00389050835021695!GO:0050662;coenzyme binding;0.00392666277142654!GO:0046474;glycerophospholipid biosynthetic process;0.00399230263268589!GO:0003729;mRNA binding;0.00410299420797907!GO:0051128;regulation of cellular component organization and biogenesis;0.00410299420797907!GO:0005815;microtubule organizing center;0.00411794791627126!GO:0008139;nuclear localization sequence binding;0.00429013483624315!GO:0016125;sterol metabolic process;0.00437351306713027!GO:0007034;vacuolar transport;0.00439323226978595!GO:0016563;transcription activator activity;0.00451929413099352!GO:0006334;nucleosome assembly;0.0045627290565862!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00466030547602347!GO:0015992;proton transport;0.00478572878575209!GO:0030057;desmosome;0.00489742670491396!GO:0008234;cysteine-type peptidase activity;0.0049761773258525!GO:0006643;membrane lipid metabolic process;0.00497755677032626!GO:0030663;COPI coated vesicle membrane;0.00503524049556795!GO:0030126;COPI vesicle coat;0.00503524049556795!GO:0008033;tRNA processing;0.00505578111434977!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00519090675097242!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00526672150906251!GO:0006818;hydrogen transport;0.00534926688580455!GO:0043488;regulation of mRNA stability;0.00541025645100904!GO:0043487;regulation of RNA stability;0.00541025645100904!GO:0005149;interleukin-1 receptor binding;0.00556346939536267!GO:0008361;regulation of cell size;0.0057684820572078!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00597468280681407!GO:0000428;DNA-directed RNA polymerase complex;0.00597468280681407!GO:0006414;translational elongation;0.00605447035042936!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00616869500921385!GO:0031497;chromatin assembly;0.00676459660124844!GO:0031902;late endosome membrane;0.00683111017927058!GO:0045045;secretory pathway;0.0068576819109688!GO:0008047;enzyme activator activity;0.00688113692817025!GO:0030659;cytoplasmic vesicle membrane;0.00688360387052084!GO:0022890;inorganic cation transmembrane transporter activity;0.00698818411287122!GO:0046519;sphingoid metabolic process;0.00709009018332719!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00719009386506645!GO:0051329;interphase of mitotic cell cycle;0.00725826526572697!GO:0051087;chaperone binding;0.00744047260529137!GO:0015631;tubulin binding;0.00746400560792857!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00747869386735371!GO:0045047;protein targeting to ER;0.00747869386735371!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00758652433627989!GO:0044437;vacuolar part;0.0076449128097202!GO:0007040;lysosome organization and biogenesis;0.00771691296670882!GO:0017166;vinculin binding;0.00773125712191756!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00779216815519399!GO:0006650;glycerophospholipid metabolic process;0.00808299014595429!GO:0016049;cell growth;0.00843954382642379!GO:0006749;glutathione metabolic process;0.00845394633479182!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00850588309558737!GO:0022406;membrane docking;0.00851810311526593!GO:0048278;vesicle docking;0.00851810311526593!GO:0005765;lysosomal membrane;0.0085271836028772!GO:0001836;release of cytochrome c from mitochondria;0.00874239180202236!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00917492516444373!GO:0046483;heterocycle metabolic process;0.00934234186508356!GO:0035258;steroid hormone receptor binding;0.00985793039451776!GO:0008312;7S RNA binding;0.00987873931189419!GO:0030137;COPI-coated vesicle;0.00995140185176565!GO:0006401;RNA catabolic process;0.0100943898451741!GO:0050789;regulation of biological process;0.0101314054659949!GO:0005869;dynactin complex;0.0101998864569518!GO:0050750;low-density lipoprotein receptor binding;0.0102381122800759!GO:0009889;regulation of biosynthetic process;0.0103716294750234!GO:0005684;U2-dependent spliceosome;0.0103814444587842!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0106374667478969!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0106374667478969!GO:0030032;lamellipodium biogenesis;0.0107715195274353!GO:0009966;regulation of signal transduction;0.0108001098880853!GO:0048487;beta-tubulin binding;0.0108018879323485!GO:0016408;C-acyltransferase activity;0.0108494205127045!GO:0030134;ER to Golgi transport vesicle;0.0109933271097539!GO:0006595;polyamine metabolic process;0.0115392195426006!GO:0043022;ribosome binding;0.0115528187887198!GO:0030833;regulation of actin filament polymerization;0.0115799207679805!GO:0016481;negative regulation of transcription;0.0115932707023719!GO:0048144;fibroblast proliferation;0.0116831081987136!GO:0048145;regulation of fibroblast proliferation;0.0116831081987136!GO:0008022;protein C-terminus binding;0.0116831081987136!GO:0051287;NAD binding;0.0118860168708773!GO:0006509;membrane protein ectodomain proteolysis;0.0119041850526468!GO:0033619;membrane protein proteolysis;0.0119041850526468!GO:0030384;phosphoinositide metabolic process;0.0122756492457375!GO:0006118;electron transport;0.0123159446610353!GO:0043492;ATPase activity, coupled to movement of substances;0.0124498185289291!GO:0030521;androgen receptor signaling pathway;0.0125003649488264!GO:0031326;regulation of cellular biosynthetic process;0.0126322753369065!GO:0006904;vesicle docking during exocytosis;0.0127482065959302!GO:0048146;positive regulation of fibroblast proliferation;0.0127569992117881!GO:0004197;cysteine-type endopeptidase activity;0.0127569992117881!GO:0045334;clathrin-coated endocytic vesicle;0.0129373301529574!GO:0007033;vacuole organization and biogenesis;0.0132774823867732!GO:0009116;nucleoside metabolic process;0.0134217374401832!GO:0000059;protein import into nucleus, docking;0.0135398958964002!GO:0043281;regulation of caspase activity;0.0137464680996547!GO:0007041;lysosomal transport;0.0140198869937514!GO:0044433;cytoplasmic vesicle part;0.0140201649242885!GO:0005819;spindle;0.0140530911565624!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0146671671740987!GO:0005832;chaperonin-containing T-complex;0.0150889801965309!GO:0016272;prefoldin complex;0.0153704652547003!GO:0008601;protein phosphatase type 2A regulator activity;0.015614090852968!GO:0030100;regulation of endocytosis;0.015614090852968!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.015614090852968!GO:0005862;muscle thin filament tropomyosin;0.0158952143689696!GO:0032940;secretion by cell;0.015961009122106!GO:0051325;interphase;0.015961009122106!GO:0007398;ectoderm development;0.0161007266415201!GO:0006644;phospholipid metabolic process;0.0162091577902752!GO:0030127;COPII vesicle coat;0.0163467379228048!GO:0012507;ER to Golgi transport vesicle membrane;0.0163467379228048!GO:0006897;endocytosis;0.0166183671417458!GO:0010324;membrane invagination;0.0166183671417458!GO:0007050;cell cycle arrest;0.0167714836124515!GO:0030027;lamellipodium;0.0169991848109489!GO:0006672;ceramide metabolic process;0.0171968686695132!GO:0046822;regulation of nucleocytoplasmic transport;0.0175491872362048!GO:0000159;protein phosphatase type 2A complex;0.0175502981588627!GO:0030984;kininogen binding;0.0175761389629718!GO:0004213;cathepsin B activity;0.0175761389629718!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0177305229244362!GO:0006082;organic acid metabolic process;0.0184289895657837!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0190749042345275!GO:0019752;carboxylic acid metabolic process;0.0191278825255175!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0194197220607699!GO:0044262;cellular carbohydrate metabolic process;0.0195512191482853!GO:0001558;regulation of cell growth;0.0196357174902855!GO:0051270;regulation of cell motility;0.0196363931520827!GO:0006892;post-Golgi vesicle-mediated transport;0.0196634473005489!GO:0031529;ruffle organization and biogenesis;0.0203030650819082!GO:0051272;positive regulation of cell motility;0.0203030650819082!GO:0040017;positive regulation of locomotion;0.0203030650819082!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0203445607690988!GO:0003711;transcription elongation regulator activity;0.0209756133179119!GO:0051336;regulation of hydrolase activity;0.0212718567625676!GO:0032984;macromolecular complex disassembly;0.0214011943793341!GO:0003690;double-stranded DNA binding;0.0218467367956809!GO:0012506;vesicle membrane;0.0221714253841173!GO:0051540;metal cluster binding;0.0225509889001965!GO:0051536;iron-sulfur cluster binding;0.0225509889001965!GO:0007265;Ras protein signal transduction;0.0225664624003651!GO:0033673;negative regulation of kinase activity;0.0225664624003651!GO:0006469;negative regulation of protein kinase activity;0.0225664624003651!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0225664624003651!GO:0015002;heme-copper terminal oxidase activity;0.0225664624003651!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0225664624003651!GO:0004129;cytochrome-c oxidase activity;0.0225664624003651!GO:0005665;DNA-directed RNA polymerase II, core complex;0.023060250836021!GO:0006778;porphyrin metabolic process;0.023060250836021!GO:0033013;tetrapyrrole metabolic process;0.023060250836021!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0231554616024421!GO:0006611;protein export from nucleus;0.0232373744731537!GO:0009166;nucleotide catabolic process;0.0232373744731537!GO:0030503;regulation of cell redox homeostasis;0.0233573547366909!GO:0043154;negative regulation of caspase activity;0.0236088782813826!GO:0030041;actin filament polymerization;0.023614746631766!GO:0043624;cellular protein complex disassembly;0.0237035335548869!GO:0045893;positive regulation of transcription, DNA-dependent;0.0237511517052556!GO:0008538;proteasome activator activity;0.0237511517052556!GO:0022411;cellular component disassembly;0.0238917420790295!GO:0008180;signalosome;0.0239465620338814!GO:0008287;protein serine/threonine phosphatase complex;0.0239471146915796!GO:0008283;cell proliferation;0.0243972639490006!GO:0000049;tRNA binding;0.0244282364737981!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0245324709192852!GO:0031301;integral to organelle membrane;0.0249405101643137!GO:0051716;cellular response to stimulus;0.0250884936796697!GO:0007088;regulation of mitosis;0.0251817936169709!GO:0004177;aminopeptidase activity;0.0255760043897571!GO:0006302;double-strand break repair;0.0256997178443473!GO:0035035;histone acetyltransferase binding;0.0258154649549571!GO:0006497;protein amino acid lipidation;0.025953013395524!GO:0006508;proteolysis;0.0269473378355573!GO:0031625;ubiquitin protein ligase binding;0.0269846459993958!GO:0000339;RNA cap binding;0.027584877534132!GO:0006629;lipid metabolic process;0.0276535233316518!GO:0006352;transcription initiation;0.0281426093038834!GO:0019904;protein domain specific binding;0.0285084442604723!GO:0007021;tubulin folding;0.0289147416141961!GO:0016251;general RNA polymerase II transcription factor activity;0.0289990593185739!GO:0000209;protein polyubiquitination;0.0290184870221286!GO:0051348;negative regulation of transferase activity;0.0292688664614668!GO:0030140;trans-Golgi network transport vesicle;0.0293150326731847!GO:0045941;positive regulation of transcription;0.0295394898301135!GO:0004674;protein serine/threonine kinase activity;0.0297394038314834!GO:0042158;lipoprotein biosynthetic process;0.0297949485790695!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0297949485790695!GO:0030433;ER-associated protein catabolic process;0.0299812272144889!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0299812272144889!GO:0006506;GPI anchor biosynthetic process;0.0303749915621734!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0305608734854481!GO:0008629;induction of apoptosis by intracellular signals;0.0307144339576785!GO:0051338;regulation of transferase activity;0.0312593908221244!GO:0040011;locomotion;0.0317948114551794!GO:0008426;protein kinase C inhibitor activity;0.0321366034775234!GO:0005874;microtubule;0.0323506072107325!GO:0050681;androgen receptor binding;0.0326420573272639!GO:0030130;clathrin coat of trans-Golgi network vesicle;0.0326457726509212!GO:0012510;trans-Golgi network transport vesicle membrane;0.0326457726509212!GO:0006458;'de novo' protein folding;0.0328036666822818!GO:0051084;'de novo' posttranslational protein folding;0.0328036666822818!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0329006714869146!GO:0000075;cell cycle checkpoint;0.0333467144994101!GO:0030145;manganese ion binding;0.0333467144994101!GO:0016791;phosphoric monoester hydrolase activity;0.033350144460206!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0334421175782516!GO:0033043;regulation of organelle organization and biogenesis;0.0334421175782516!GO:0030128;clathrin coat of endocytic vesicle;0.033482346422011!GO:0030669;clathrin-coated endocytic vesicle membrane;0.033482346422011!GO:0030122;AP-2 adaptor complex;0.033482346422011!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.034233004324055!GO:0001666;response to hypoxia;0.0349552108594728!GO:0033559;unsaturated fatty acid metabolic process;0.035015019342641!GO:0006636;unsaturated fatty acid biosynthetic process;0.035015019342641!GO:0006505;GPI anchor metabolic process;0.0351217596090506!GO:0009112;nucleobase metabolic process;0.0351503851223396!GO:0045767;regulation of anti-apoptosis;0.0351672174232073!GO:0004722;protein serine/threonine phosphatase activity;0.0358740867846529!GO:0043241;protein complex disassembly;0.0359469688613202!GO:0043284;biopolymer biosynthetic process;0.0359894383340255!GO:0000082;G1/S transition of mitotic cell cycle;0.0364527801196131!GO:0045936;negative regulation of phosphate metabolic process;0.0364527801196131!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0370152917600178!GO:0006984;ER-nuclear signaling pathway;0.0374700048540296!GO:0006607;NLS-bearing substrate import into nucleus;0.0381538743309878!GO:0040012;regulation of locomotion;0.0382419908374717!GO:0003684;damaged DNA binding;0.0382419908374717!GO:0030149;sphingolipid catabolic process;0.0393695710287147!GO:0005637;nuclear inner membrane;0.0402443026626056!GO:0006289;nucleotide-excision repair;0.0407059405352047!GO:0005784;translocon complex;0.0407268997027249!GO:0015248;sterol transporter activity;0.0423609912645171!GO:0008299;isoprenoid biosynthetic process;0.0430089768470365!GO:0030911;TPR domain binding;0.0430207068007204!GO:0046426;negative regulation of JAK-STAT cascade;0.0440665635003683!GO:0048037;cofactor binding;0.0446999650727788!GO:0042168;heme metabolic process;0.0447036519642302!GO:0031371;ubiquitin conjugating enzyme complex;0.044720113976133!GO:0006518;peptide metabolic process;0.0452600203699236!GO:0003756;protein disulfide isomerase activity;0.045815656927903!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.045815656927903!GO:0008203;cholesterol metabolic process;0.0466807746256347!GO:0043086;negative regulation of catalytic activity;0.0467411152966522!GO:0051092;activation of NF-kappaB transcription factor;0.0476466132347326!GO:0030518;steroid hormone receptor signaling pathway;0.0476614616888048!GO:0006740;NADPH regeneration;0.0477395127616783!GO:0006098;pentose-phosphate shunt;0.0477395127616783!GO:0005200;structural constituent of cytoskeleton;0.0478175504631938!GO:0004680;casein kinase activity;0.0483912558977128!GO:0030508;thiol-disulfide exchange intermediate activity;0.0486542847832111!GO:0005938;cell cortex;0.0486542847832111!GO:0006733;oxidoreduction coenzyme metabolic process;0.0487053318949702!GO:0051100;negative regulation of binding;0.049123437725638!GO:0007032;endosome organization and biogenesis;0.0494001209829551!GO:0006405;RNA export from nucleus;0.049652763203787!GO:0008625;induction of apoptosis via death domain receptors;0.0496648804559197!GO:0042987;amyloid precursor protein catabolic process;0.0498797109050979 | |||
|sample_id=11221 | |sample_id=11221 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=gum | |sample_tissue=gum | ||
|top_motifs=TP53:2.51354060436;TBX4,5:2.23929097206;PPARG:1.87480746221;ZEB1:1.84099534906;VSX1,2:1.82496724785;TEF:1.70677458953;ADNP_IRX_SIX_ZHX:1.47160737227;SNAI1..3:1.4423366165;XCPE1{core}:1.19755539368;STAT5{A,B}:1.18495474818;TFCP2:1.17480184535;ONECUT1,2:1.12861760175;NKX2-2,8:1.09966022961;ZNF148:1.09322631178;TEAD1:1.07664276407;PDX1:1.03416252519;SP1:1.03305099871;TBP:0.894509239097;NKX2-3_NKX2-5:0.880513964158;FOXL1:0.86460037127;FOS_FOS{B,L1}_JUN{B,D}:0.864575554019;MYOD1:0.83149684457;bHLH_family:0.744086482869;IKZF1:0.683783614426;FOSL2:0.681841268307;FOXM1:0.663851102616;HAND1,2:0.631085368071;NFIL3:0.62859070993;BACH2:0.592696046184;CDC5L:0.591537139933;PAX1,9:0.574543185264;NKX2-1,4:0.551931475529;TFAP2{A,C}:0.545574861813;MAZ:0.539306056067;SPZ1:0.538529576152;NFIX:0.537669484264;POU3F1..4:0.511343882712;FOXQ1:0.461586035591;NR1H4:0.409647986516;NANOG:0.398283292745;NKX3-2:0.393973407668;ELK1,4_GABP{A,B1}:0.376562617877;ARID5B:0.3760256466;T:0.367426124998;SOX17:0.364740144065;ZNF238:0.339487186862;CRX:0.311741840172;NR5A1,2:0.28734790761;SOX2:0.27856703497;POU1F1:0.275591714851;LMO2:0.267072112024;HIF1A:0.258303077026;HLF:0.228657223201;SMAD1..7,9:0.217791568911;RBPJ:0.205835449782;IRF7:0.194956182246;HSF1,2:0.174718089308;GZF1:0.169100533809;NFE2:0.146196230124;MYBL2:0.136668540844;LEF1_TCF7_TCF7L1,2:0.129312800513;ZIC1..3:0.121479287117;FOX{F1,F2,J1}:0.0971363613654;HOX{A4,D4}:0.0755483862228;GLI1..3:0.073585358837;POU6F1:0.0685800379507;NHLH1,2:0.047443854889;TLX1..3_NFIC{dimer}:0.0455514548816;REST:0.0429036610237;ZBTB6:0.0370252833275;GFI1B:0.0333398830225;OCT4_SOX2{dimer}:0.0237196301945;ZNF143:0.0104358860586;CEBPA,B_DDIT3:-0.00248939450401;PAX2:-0.00597604559632;TLX2:-0.0101390743232;ESR1:-0.0172414346971;FOXO1,3,4:-0.0277908800117;MTF1:-0.0334046542774;ZNF423:-0.0414046876122;ELF1,2,4:-0.0428356204794;EBF1:-0.0545935950339;GTF2A1,2:-0.0696213000107;NFKB1_REL_RELA:-0.0764968024777;UFEwm:-0.0842985550061;FOX{I1,J2}:-0.0846343013131;EP300:-0.121489144078;TFAP2B:-0.125032771599;TFDP1:-0.150594149712;HNF1A:-0.155672463793;GTF2I:-0.160795238264;EVI1:-0.161095123121;EN1,2:-0.180129044899;NRF1:-0.184813034494;KLF4:-0.190611761064;PAX5:-0.192141574654;HES1:-0.202112136472;ETS1,2:-0.220279849111;HOXA9_MEIS1:-0.232874014473;SOX{8,9,10}:-0.248446486446;HIC1:-0.252110268678;FOXN1:-0.256889917862;ZBTB16:-0.275151888082;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.292483623286;LHX3,4:-0.302523081337;JUN:-0.304693601102;NFATC1..3:-0.306321971951;HOX{A6,A7,B6,B7}:-0.31480191661;AR:-0.322159682332;PAX4:-0.324051260817;TFAP4:-0.351805955423;MED-1{core}:-0.356415176282;GFI1:-0.357583378745;SPIB:-0.363140124215;SPI1:-0.380454727061;ZFP161:-0.381307291547;HOX{A5,B5}:-0.388919129114;POU2F1..3:-0.404770733787;HMGA1,2:-0.408871924603;SREBF1,2:-0.417413529472;MTE{core}:-0.424363059732;NFE2L2:-0.429314020326;HMX1:-0.430240761664;HNF4A_NR2F1,2:-0.435330976387;GCM1,2:-0.437161550709;ATF5_CREB3:-0.455253614846;FOXA2:-0.470895737946;PAX6:-0.471470939969;PAX8:-0.477322877254;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.498760793259;PITX1..3:-0.50604837712;SRF:-0.511338446464;GATA6:-0.51655487104;RFX2..5_RFXANK_RFXAP:-0.517620215684;MYFfamily:-0.519488338924;ALX4:-0.523520600958;EGR1..3:-0.526922900481;STAT2,4,6:-0.544452928295;NR3C1:-0.550250612006;E2F1..5:-0.57627308478;IRF1,2:-0.579092102007;MEF2{A,B,C,D}:-0.588309159077;RUNX1..3:-0.597781805561;NFY{A,B,C}:-0.605642696675;DMAP1_NCOR{1,2}_SMARC:-0.611794517012;NKX6-1,2:-0.624427380339;YY1:-0.624726639748;PRRX1,2:-0.625179970559;MAFB:-0.626386435763;RREB1:-0.641975694262;RFX1:-0.651210642456;TGIF1:-0.65981985322;NKX3-1:-0.661560465069;RXR{A,B,G}:-0.662739250734;FOX{D1,D2}:-0.683749037928;AIRE:-0.698702009681;ATF2:-0.718042669947;STAT1,3:-0.765192189924;CDX1,2,4:-0.766952223345;FOXP1:-0.767485257024;BPTF:-0.767785821044;PRDM1:-0.777921295896;FOXD3:-0.781404804214;MYB:-0.791162871692;RORA:-0.795166849728;NFE2L1:-0.802372523517;ATF4:-0.810714952652;CUX2:-0.820342778747;FOXP3:-0.835923713569;POU5F1:-0.887540115846;HBP1_HMGB_SSRP1_UBTF:-0.893971543069;TOPORS:-0.903784495054;ATF6:-0.930035572189;AHR_ARNT_ARNT2:-0.95100373649;NANOG{mouse}:-0.956197704328;CREB1:-0.961575056809;DBP:-0.998427361163;ALX1:-1.01699298135;ESRRA:-1.04271315622;PATZ1:-1.05931459584;ZNF384:-1.0630276985;MZF1:-1.0760818366;PAX3,7:-1.07649561441;GATA4:-1.11779075712;TAL1_TCF{3,4,12}:-1.22045272601;NR6A1:-1.24694276718;PBX1:-1.24719142575;SOX5:-1.34484222882;RXRA_VDR{dimer}:-1.34873453208;IKZF2:-1.40504055684;BREu{core}:-1.50904148017;XBP1:-1.56996798345 | |top_motifs=TP53:2.51354060436;TBX4,5:2.23929097206;PPARG:1.87480746221;ZEB1:1.84099534906;VSX1,2:1.82496724785;TEF:1.70677458953;ADNP_IRX_SIX_ZHX:1.47160737227;SNAI1..3:1.4423366165;XCPE1{core}:1.19755539368;STAT5{A,B}:1.18495474818;TFCP2:1.17480184535;ONECUT1,2:1.12861760175;NKX2-2,8:1.09966022961;ZNF148:1.09322631178;TEAD1:1.07664276407;PDX1:1.03416252519;SP1:1.03305099871;TBP:0.894509239097;NKX2-3_NKX2-5:0.880513964158;FOXL1:0.86460037127;FOS_FOS{B,L1}_JUN{B,D}:0.864575554019;MYOD1:0.83149684457;bHLH_family:0.744086482869;IKZF1:0.683783614426;FOSL2:0.681841268307;FOXM1:0.663851102616;HAND1,2:0.631085368071;NFIL3:0.62859070993;BACH2:0.592696046184;CDC5L:0.591537139933;PAX1,9:0.574543185264;NKX2-1,4:0.551931475529;TFAP2{A,C}:0.545574861813;MAZ:0.539306056067;SPZ1:0.538529576152;NFIX:0.537669484264;POU3F1..4:0.511343882712;FOXQ1:0.461586035591;NR1H4:0.409647986516;NANOG:0.398283292745;NKX3-2:0.393973407668;ELK1,4_GABP{A,B1}:0.376562617877;ARID5B:0.3760256466;T:0.367426124998;SOX17:0.364740144065;ZNF238:0.339487186862;CRX:0.311741840172;NR5A1,2:0.28734790761;SOX2:0.27856703497;POU1F1:0.275591714851;LMO2:0.267072112024;HIF1A:0.258303077026;HLF:0.228657223201;SMAD1..7,9:0.217791568911;RBPJ:0.205835449782;IRF7:0.194956182246;HSF1,2:0.174718089308;GZF1:0.169100533809;NFE2:0.146196230124;MYBL2:0.136668540844;LEF1_TCF7_TCF7L1,2:0.129312800513;ZIC1..3:0.121479287117;FOX{F1,F2,J1}:0.0971363613654;HOX{A4,D4}:0.0755483862228;GLI1..3:0.073585358837;POU6F1:0.0685800379507;NHLH1,2:0.047443854889;TLX1..3_NFIC{dimer}:0.0455514548816;REST:0.0429036610237;ZBTB6:0.0370252833275;GFI1B:0.0333398830225;OCT4_SOX2{dimer}:0.0237196301945;ZNF143:0.0104358860586;CEBPA,B_DDIT3:-0.00248939450401;PAX2:-0.00597604559632;TLX2:-0.0101390743232;ESR1:-0.0172414346971;FOXO1,3,4:-0.0277908800117;MTF1:-0.0334046542774;ZNF423:-0.0414046876122;ELF1,2,4:-0.0428356204794;EBF1:-0.0545935950339;GTF2A1,2:-0.0696213000107;NFKB1_REL_RELA:-0.0764968024777;UFEwm:-0.0842985550061;FOX{I1,J2}:-0.0846343013131;EP300:-0.121489144078;TFAP2B:-0.125032771599;TFDP1:-0.150594149712;HNF1A:-0.155672463793;GTF2I:-0.160795238264;EVI1:-0.161095123121;EN1,2:-0.180129044899;NRF1:-0.184813034494;KLF4:-0.190611761064;PAX5:-0.192141574654;HES1:-0.202112136472;ETS1,2:-0.220279849111;HOXA9_MEIS1:-0.232874014473;SOX{8,9,10}:-0.248446486446;HIC1:-0.252110268678;FOXN1:-0.256889917862;ZBTB16:-0.275151888082;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.292483623286;LHX3,4:-0.302523081337;JUN:-0.304693601102;NFATC1..3:-0.306321971951;HOX{A6,A7,B6,B7}:-0.31480191661;AR:-0.322159682332;PAX4:-0.324051260817;TFAP4:-0.351805955423;MED-1{core}:-0.356415176282;GFI1:-0.357583378745;SPIB:-0.363140124215;SPI1:-0.380454727061;ZFP161:-0.381307291547;HOX{A5,B5}:-0.388919129114;POU2F1..3:-0.404770733787;HMGA1,2:-0.408871924603;SREBF1,2:-0.417413529472;MTE{core}:-0.424363059732;NFE2L2:-0.429314020326;HMX1:-0.430240761664;HNF4A_NR2F1,2:-0.435330976387;GCM1,2:-0.437161550709;ATF5_CREB3:-0.455253614846;FOXA2:-0.470895737946;PAX6:-0.471470939969;PAX8:-0.477322877254;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.498760793259;PITX1..3:-0.50604837712;SRF:-0.511338446464;GATA6:-0.51655487104;RFX2..5_RFXANK_RFXAP:-0.517620215684;MYFfamily:-0.519488338924;ALX4:-0.523520600958;EGR1..3:-0.526922900481;STAT2,4,6:-0.544452928295;NR3C1:-0.550250612006;E2F1..5:-0.57627308478;IRF1,2:-0.579092102007;MEF2{A,B,C,D}:-0.588309159077;RUNX1..3:-0.597781805561;NFY{A,B,C}:-0.605642696675;DMAP1_NCOR{1,2}_SMARC:-0.611794517012;NKX6-1,2:-0.624427380339;YY1:-0.624726639748;PRRX1,2:-0.625179970559;MAFB:-0.626386435763;RREB1:-0.641975694262;RFX1:-0.651210642456;TGIF1:-0.65981985322;NKX3-1:-0.661560465069;RXR{A,B,G}:-0.662739250734;FOX{D1,D2}:-0.683749037928;AIRE:-0.698702009681;ATF2:-0.718042669947;STAT1,3:-0.765192189924;CDX1,2,4:-0.766952223345;FOXP1:-0.767485257024;BPTF:-0.767785821044;PRDM1:-0.777921295896;FOXD3:-0.781404804214;MYB:-0.791162871692;RORA:-0.795166849728;NFE2L1:-0.802372523517;ATF4:-0.810714952652;CUX2:-0.820342778747;FOXP3:-0.835923713569;POU5F1:-0.887540115846;HBP1_HMGB_SSRP1_UBTF:-0.893971543069;TOPORS:-0.903784495054;ATF6:-0.930035572189;AHR_ARNT_ARNT2:-0.95100373649;NANOG{mouse}:-0.956197704328;CREB1:-0.961575056809;DBP:-0.998427361163;ALX1:-1.01699298135;ESRRA:-1.04271315622;PATZ1:-1.05931459584;ZNF384:-1.0630276985;MZF1:-1.0760818366;PAX3,7:-1.07649561441;GATA4:-1.11779075712;TAL1_TCF{3,4,12}:-1.22045272601;NR6A1:-1.24694276718;PBX1:-1.24719142575;SOX5:-1.34484222882;RXRA_VDR{dimer}:-1.34873453208;IKZF2:-1.40504055684;BREu{core}:-1.50904148017;XBP1:-1.56996798345 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11221-116B6;search_select_hide=table117:FF:11221-116B6 | |||
}} | }} | ||
Latest revision as of 16:25, 3 June 2020
| Name: | Gingival epithelial cells, donor1 (GEA11) |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11061 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11061
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11061
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.674 |
| 10 | 10 | 0.49 |
| 100 | 100 | 0.972 |
| 101 | 101 | 0.0281 |
| 102 | 102 | 0.356 |
| 103 | 103 | 0.0775 |
| 104 | 104 | 0.715 |
| 105 | 105 | 0.254 |
| 106 | 106 | 0.0452 |
| 107 | 107 | 0.0869 |
| 108 | 108 | 0.531 |
| 109 | 109 | 0.00617 |
| 11 | 11 | 0.527 |
| 110 | 110 | 0.541 |
| 111 | 111 | 0.447 |
| 112 | 112 | 0.236 |
| 113 | 113 | 0.128 |
| 114 | 114 | 0.378 |
| 115 | 115 | 0.858 |
| 116 | 116 | 0.635 |
| 117 | 117 | 0.387 |
| 118 | 118 | 0.892 |
| 119 | 119 | 0.273 |
| 12 | 12 | 0.931 |
| 120 | 120 | 0.0526 |
| 121 | 121 | 0.392 |
| 122 | 122 | 0.0595 |
| 123 | 123 | 0.143 |
| 124 | 124 | 0.0108 |
| 125 | 125 | 0.898 |
| 126 | 126 | 0.404 |
| 127 | 127 | 0.462 |
| 128 | 128 | 0.482 |
| 129 | 129 | 0.128 |
| 13 | 13 | 0.169 |
| 130 | 130 | 0.875 |
| 131 | 131 | 0.251 |
| 132 | 132 | 0.463 |
| 133 | 133 | 0.0303 |
| 134 | 134 | 0.481 |
| 135 | 135 | 0.697 |
| 136 | 136 | 0.00829 |
| 137 | 137 | 0.351 |
| 138 | 138 | 0.906 |
| 139 | 139 | 0.673 |
| 14 | 14 | 0.703 |
| 140 | 140 | 0.88 |
| 141 | 141 | 0.965 |
| 142 | 142 | 0.671 |
| 143 | 143 | 0.667 |
| 144 | 144 | 0.264 |
| 145 | 145 | 0.0945 |
| 146 | 146 | 0.0295 |
| 147 | 147 | 0.199 |
| 148 | 148 | 0.834 |
| 149 | 149 | 0.993 |
| 15 | 15 | 0.829 |
| 150 | 150 | 0.13 |
| 151 | 151 | 0.473 |
| 152 | 152 | 0.00515 |
| 153 | 153 | 0.618 |
| 154 | 154 | 0.779 |
| 155 | 155 | 0.771 |
| 156 | 156 | 0.969 |
| 157 | 157 | 0.544 |
| 158 | 158 | 0.101 |
| 159 | 159 | 0.352 |
| 16 | 16 | 0.0682 |
| 160 | 160 | 0.578 |
| 161 | 161 | 0.82 |
| 162 | 162 | 0.268 |
| 163 | 163 | 0.254 |
| 164 | 164 | 0.759 |
| 165 | 165 | 0.0832 |
| 166 | 166 | 0.334 |
| 167 | 167 | 0.0593 |
| 168 | 168 | 0.145 |
| 169 | 169 | 0.132 |
| 17 | 17 | 0.376 |
| 18 | 18 | 0.556 |
| 19 | 19 | 0.658 |
| 2 | 2 | 0.223 |
| 20 | 20 | 0.777 |
| 21 | 21 | 0.583 |
| 22 | 22 | 0.302 |
| 23 | 23 | 0.296 |
| 24 | 24 | 0.00729 |
| 25 | 25 | 0.988 |
| 26 | 26 | 0.613 |
| 27 | 27 | 0.4 |
| 28 | 28 | 0.625 |
| 29 | 29 | 0.674 |
| 3 | 3 | 0.603 |
| 30 | 30 | 0.0623 |
| 31 | 31 | 0.803 |
| 32 | 32 | 0.162 |
| 33 | 33 | 0.12 |
| 34 | 34 | 0.958 |
| 35 | 35 | 0.0781 |
| 36 | 36 | 0.616 |
| 37 | 37 | 0.163 |
| 38 | 38 | 0.588 |
| 39 | 39 | 0.202 |
| 4 | 4 | 0.646 |
| 40 | 40 | 0.0524 |
| 41 | 41 | 0.998 |
| 42 | 42 | 0.746 |
| 43 | 43 | 0.685 |
| 44 | 44 | 0.442 |
| 45 | 45 | 0.0299 |
| 46 | 46 | 0.885 |
| 47 | 47 | 0.662 |
| 48 | 48 | 0.219 |
| 49 | 49 | 0.383 |
| 5 | 5 | 0.945 |
| 50 | 50 | 0.307 |
| 51 | 51 | 0.824 |
| 52 | 52 | 0.125 |
| 53 | 53 | 0.448 |
| 54 | 54 | 0.701 |
| 55 | 55 | 0.0913 |
| 56 | 56 | 0.289 |
| 57 | 57 | 0.752 |
| 58 | 58 | 0.98 |
| 59 | 59 | 0.309 |
| 6 | 6 | 0.422 |
| 60 | 60 | 0.139 |
| 61 | 61 | 0.65 |
| 62 | 62 | 0.528 |
| 63 | 63 | 0.137 |
| 64 | 64 | 0.898 |
| 65 | 65 | 0.781 |
| 66 | 66 | 0.638 |
| 67 | 67 | 0.557 |
| 68 | 68 | 0.0619 |
| 69 | 69 | 0.263 |
| 7 | 7 | 0.311 |
| 70 | 70 | 0.0611 |
| 71 | 71 | 0.857 |
| 72 | 72 | 0.529 |
| 73 | 73 | 0.00109 |
| 74 | 74 | 0.0434 |
| 75 | 75 | 0.436 |
| 76 | 76 | 0.811 |
| 77 | 77 | 0.00578 |
| 78 | 78 | 0.0281 |
| 79 | 79 | 0.53 |
| 8 | 8 | 0.729 |
| 80 | 80 | 0.924 |
| 81 | 81 | 0.388 |
| 82 | 82 | 0.597 |
| 83 | 83 | 0.831 |
| 84 | 84 | 0.971 |
| 85 | 85 | 0.382 |
| 86 | 86 | 0.79 |
| 87 | 87 | 0.0027 |
| 88 | 88 | 0.899 |
| 89 | 89 | 0.0541 |
| 9 | 9 | 0.924 |
| 90 | 90 | 0.567 |
| 91 | 91 | 0.986 |
| 92 | 92 | 0.932 |
| 93 | 93 | 0.998 |
| 94 | 94 | 0.211 |
| 95 | 95 | 0.109 |
| 96 | 96 | 0.542 |
| 97 | 97 | 0.346 |
| 98 | 98 | 0.862 |
| 99 | 99 | 0.0665 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11061
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)
0002621 (gingival epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000483 (epithelium)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0000344 (mucosa)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0005911 (endo-epithelium)
0004923 (organ component layer)
0000161 (orifice)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0010371 (ecto-epithelium)
0003350 (epithelium of mucosa)
0003929 (gut epithelium)
0000486 (multilaminar epithelium)
0004807 (respiratory system epithelium)
0003729 (mouth mucosa)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001828 (gingiva)
0001949 (gingival epithelium)
0001004 (respiratory system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0000166 (oral opening)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000254 (human gingival epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
