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{{f5samples
{{f5samples
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Line 35: Line 42:
|fonse_treatment_closure=
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/liver%252c%2520fetal%252c%2520pool1.CNhs11798.10086-102B5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/liver%252c%2520fetal%252c%2520pool1.CNhs11798.10086-102B5.hg19.nobarcode.rdna.fa.gz
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|id=FF:10086-102B5
|id=FF:10086-102B5
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|name=liver, fetal, pool1
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|namespace=FANTOM5
Line 42: Line 61:
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|rna_box=102
|rna_box=102
|rna_catalog_number=Cat: 636643 Lot: 8101369A-6
|rna_catalog_number=Cat: 636643 Lot: 8101369A-6
Line 57: Line 79:
|rna_weight_ug=10
|rna_weight_ug=10
|sample_age=
|sample_age=
|sample_category=tissues
|sample_cell_catalog=NA
|sample_cell_catalog=NA
|sample_cell_line=
|sample_cell_line=
Line 69: Line 92:
|sample_ethnicity=C
|sample_ethnicity=C
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.24963389386559e-241!GO:0005737;cytoplasm;2.3530083340876e-220!GO:0044444;cytoplasmic part;7.53866649696593e-181!GO:0043231;intracellular membrane-bound organelle;5.42852772088252e-122!GO:0043227;membrane-bound organelle;5.42852772088252e-122!GO:0043226;organelle;1.54874212735854e-116!GO:0043229;intracellular organelle;3.03301087376756e-116!GO:0044422;organelle part;8.88361375743728e-109!GO:0044446;intracellular organelle part;3.34976432487507e-107!GO:0005739;mitochondrion;1.29900794260936e-94!GO:0044237;cellular metabolic process;1.4260110337806e-77!GO:0044238;primary metabolic process;1.05056975688854e-71!GO:0032991;macromolecular complex;1.81053600174219e-68!GO:0031090;organelle membrane;6.34362632538458e-66!GO:0009058;biosynthetic process;2.02704832851999e-63!GO:0044429;mitochondrial part;1.30452026147616e-62!GO:0005515;protein binding;7.52143231451577e-57!GO:0019538;protein metabolic process;1.24137604814423e-54!GO:0030529;ribonucleoprotein complex;2.45914026254599e-53!GO:0044249;cellular biosynthetic process;6.150439807439e-52!GO:0044260;cellular macromolecule metabolic process;1.69793214776688e-50!GO:0044267;cellular protein metabolic process;9.57267547865531e-49!GO:0031967;organelle envelope;1.7197190399429e-48!GO:0031975;envelope;4.81082760876932e-48!GO:0043233;organelle lumen;2.31682219442884e-47!GO:0031974;membrane-enclosed lumen;2.31682219442884e-47!GO:0005829;cytosol;3.79304479639167e-43!GO:0009059;macromolecule biosynthetic process;1.12029094765215e-42!GO:0043170;macromolecule metabolic process;3.85289964785149e-42!GO:0005840;ribosome;2.55292739388851e-41!GO:0006412;translation;2.61788552931478e-41!GO:0005740;mitochondrial envelope;1.09008718385308e-40!GO:0019866;organelle inner membrane;3.24643342488088e-39!GO:0031966;mitochondrial membrane;5.74534838531821e-39!GO:0043234;protein complex;1.28574364082417e-37!GO:0005743;mitochondrial inner membrane;3.12994521744007e-37!GO:0003735;structural constituent of ribosome;4.28817695423299e-36!GO:0003723;RNA binding;5.49582174774187e-36!GO:0005783;endoplasmic reticulum;1.41533855978727e-33!GO:0016043;cellular component organization and biogenesis;3.30117913687163e-32!GO:0033279;ribosomal subunit;1.10512840334738e-31!GO:0006082;organic acid metabolic process;3.01924807360107e-31!GO:0044428;nuclear part;4.39090570616486e-31!GO:0015031;protein transport;4.48730061491043e-31!GO:0033036;macromolecule localization;9.94434601949004e-31!GO:0019752;carboxylic acid metabolic process;2.59168371294031e-30!GO:0016491;oxidoreductase activity;1.78573092641138e-29!GO:0045184;establishment of protein localization;2.1204804466283e-29!GO:0008104;protein localization;2.76166170240906e-29!GO:0031980;mitochondrial lumen;2.78930678830436e-29!GO:0005759;mitochondrial matrix;2.78930678830436e-29!GO:0044248;cellular catabolic process;3.30115315215847e-28!GO:0012505;endomembrane system;1.43418281040444e-26!GO:0044432;endoplasmic reticulum part;1.0136907864457e-25!GO:0065003;macromolecular complex assembly;1.07612906903853e-25!GO:0051186;cofactor metabolic process;5.56751756242454e-25!GO:0046907;intracellular transport;1.77343517522378e-24!GO:0044445;cytosolic part;4.01497426788213e-24!GO:0006950;response to stress;1.81783356869294e-23!GO:0009056;catabolic process;3.15365951120234e-23!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.54086058206241e-23!GO:0006886;intracellular protein transport;1.29593523758088e-22!GO:0022607;cellular component assembly;2.48411411563894e-22!GO:0044255;cellular lipid metabolic process;1.07121202005739e-21!GO:0006119;oxidative phosphorylation;2.56880135018154e-21!GO:0042175;nuclear envelope-endoplasmic reticulum network;9.906194208032e-21!GO:0005789;endoplasmic reticulum membrane;1.22986981183977e-20!GO:0044455;mitochondrial membrane part;4.58793275168774e-20!GO:0006091;generation of precursor metabolites and energy;6.01304692467023e-20!GO:0006629;lipid metabolic process;9.86777082481845e-20!GO:0016071;mRNA metabolic process;1.24385816522597e-19!GO:0006396;RNA processing;1.33350615124409e-18!GO:0006807;nitrogen compound metabolic process;2.72065943312288e-18!GO:0006732;coenzyme metabolic process;3.0604230816523e-18!GO:0005746;mitochondrial respiratory chain;4.95378575976904e-18!GO:0015935;small ribosomal subunit;1.91778536057047e-17!GO:0008380;RNA splicing;3.1768454773041e-17!GO:0031981;nuclear lumen;3.8495041496693e-17!GO:0009055;electron carrier activity;1.25592122464453e-16!GO:0000166;nucleotide binding;1.44098837163142e-16!GO:0009308;amine metabolic process;2.79221147648382e-16!GO:0051649;establishment of cellular localization;4.9410782832405e-16!GO:0006397;mRNA processing;5.85934728618058e-16!GO:0048770;pigment granule;6.34399881874009e-16!GO:0042470;melanosome;6.34399881874009e-16!GO:0051641;cellular localization;6.37846560948655e-16!GO:0050136;NADH dehydrogenase (quinone) activity;7.02171057035937e-16!GO:0003954;NADH dehydrogenase activity;7.02171057035937e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.02171057035937e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.11014675198714e-16!GO:0008219;cell death;8.66152335362756e-16!GO:0016265;death;8.66152335362756e-16!GO:0012501;programmed cell death;1.33603781489326e-15!GO:0006915;apoptosis;1.52422017277097e-15!GO:0044265;cellular macromolecule catabolic process;1.61760673612839e-15!GO:0016874;ligase activity;1.8936125244959e-15!GO:0015934;large ribosomal subunit;2.08732786470957e-15!GO:0005794;Golgi apparatus;6.80744488448413e-15!GO:0006519;amino acid and derivative metabolic process;6.96222893777713e-15!GO:0009057;macromolecule catabolic process;9.76499950317086e-15!GO:0006996;organelle organization and biogenesis;1.09108767846425e-14!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.18809105537202e-14!GO:0002526;acute inflammatory response;3.13854063923877e-14!GO:0032787;monocarboxylic acid metabolic process;3.78403843602279e-14!GO:0006520;amino acid metabolic process;4.29575170391404e-14!GO:0030964;NADH dehydrogenase complex (quinone);5.83447741450694e-14!GO:0045271;respiratory chain complex I;5.83447741450694e-14!GO:0005747;mitochondrial respiratory chain complex I;5.83447741450694e-14!GO:0005634;nucleus;6.39729662941842e-14!GO:0042775;organelle ATP synthesis coupled electron transport;6.48559483394264e-14!GO:0042773;ATP synthesis coupled electron transport;6.48559483394264e-14!GO:0006066;alcohol metabolic process;8.0919053952534e-14!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.1985374378694e-13!GO:0016462;pyrophosphatase activity;1.22689471268759e-13!GO:0016817;hydrolase activity, acting on acid anhydrides;1.59174508137642e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.88011207917957e-13!GO:0006457;protein folding;2.28392200327294e-13!GO:0051082;unfolded protein binding;3.24122269452319e-13!GO:0016192;vesicle-mediated transport;4.06677699600257e-13!GO:0043228;non-membrane-bound organelle;4.87630717613193e-13!GO:0043232;intracellular non-membrane-bound organelle;4.87630717613193e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.4165107261103e-13!GO:0017111;nucleoside-triphosphatase activity;8.89170808567783e-13!GO:0005681;spliceosome;1.59791520365499e-12!GO:0048037;cofactor binding;1.81214847865459e-12!GO:0008134;transcription factor binding;1.87867130911781e-12!GO:0044262;cellular carbohydrate metabolic process;1.97896449260499e-12!GO:0043285;biopolymer catabolic process;2.51428402665017e-12!GO:0022618;protein-RNA complex assembly;2.86477070627868e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.34751641263289e-12!GO:0017076;purine nucleotide binding;4.4662887104055e-12!GO:0005761;mitochondrial ribosome;5.09824157201621e-12!GO:0000313;organellar ribosome;5.09824157201621e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;5.45942923552605e-12!GO:0006118;electron transport;5.59671608819352e-12!GO:0005793;ER-Golgi intermediate compartment;7.33316006820639e-12!GO:0044257;cellular protein catabolic process;7.99169683891502e-12!GO:0006511;ubiquitin-dependent protein catabolic process;9.20837745490467e-12!GO:0019941;modification-dependent protein catabolic process;9.20837745490467e-12!GO:0043632;modification-dependent macromolecule catabolic process;9.20837745490467e-12!GO:0000502;proteasome complex (sensu Eukaryota);1.09234678489211e-11!GO:0043412;biopolymer modification;1.45191379542008e-11!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.48719709891393e-11!GO:0030163;protein catabolic process;1.65141284521908e-11!GO:0006605;protein targeting;1.80224689934284e-11!GO:0016787;hydrolase activity;1.80489015493516e-11!GO:0006259;DNA metabolic process;4.06616906188908e-11!GO:0051188;cofactor biosynthetic process;6.23582923101239e-11!GO:0016125;sterol metabolic process;6.50893755420858e-11!GO:0005654;nucleoplasm;6.80149342243943e-11!GO:0006464;protein modification process;7.22699691118347e-11!GO:0032553;ribonucleotide binding;1.94256166850964e-10!GO:0032555;purine ribonucleotide binding;1.94256166850964e-10!GO:0006512;ubiquitin cycle;2.34190415208834e-10!GO:0008135;translation factor activity, nucleic acid binding;2.66358330995183e-10!GO:0030554;adenyl nucleotide binding;3.50255000149342e-10!GO:0043069;negative regulation of programmed cell death;3.74039854666473e-10!GO:0006958;complement activation, classical pathway;3.7844208937552e-10!GO:0043066;negative regulation of apoptosis;4.73945770244688e-10!GO:0042981;regulation of apoptosis;5.26198503348613e-10!GO:0008610;lipid biosynthetic process;6.3735852478842e-10!GO:0005773;vacuole;6.45416622589287e-10!GO:0006913;nucleocytoplasmic transport;6.95318459697459e-10!GO:0048193;Golgi vesicle transport;7.02896212716873e-10!GO:0002541;activation of plasma proteins during acute inflammatory response;7.3338418024265e-10!GO:0006956;complement activation;7.3338418024265e-10!GO:0043067;regulation of programmed cell death;9.2326387371901e-10!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;9.4168644680963e-10!GO:0002455;humoral immune response mediated by circulating immunoglobulin;9.487361714661e-10!GO:0006631;fatty acid metabolic process;1.436254615782e-09!GO:0008203;cholesterol metabolic process;1.47288572184943e-09!GO:0006461;protein complex assembly;1.52854317016361e-09!GO:0051169;nuclear transport;1.60056925262862e-09!GO:0005635;nuclear envelope;2.22765380646468e-09!GO:0005975;carbohydrate metabolic process;2.28812653698334e-09!GO:0048523;negative regulation of cellular process;2.40935106927884e-09!GO:0044451;nucleoplasm part;4.52419122821971e-09!GO:0044270;nitrogen compound catabolic process;4.56493323950483e-09!GO:0046483;heterocycle metabolic process;4.78891650437727e-09!GO:0000323;lytic vacuole;6.03399420819968e-09!GO:0005764;lysosome;6.03399420819968e-09!GO:0048519;negative regulation of biological process;8.42079125351688e-09!GO:0016740;transferase activity;8.55037103671842e-09!GO:0046930;pore complex;9.42227516913574e-09!GO:0005768;endosome;9.76925082231065e-09!GO:0032559;adenyl ribonucleotide binding;1.11562607828779e-08!GO:0043687;post-translational protein modification;1.14048273574759e-08!GO:0051246;regulation of protein metabolic process;1.14440422246244e-08!GO:0050662;coenzyme binding;1.4197647580393e-08!GO:0051187;cofactor catabolic process;1.42582565041899e-08!GO:0008565;protein transporter activity;1.86693162874649e-08!GO:0005524;ATP binding;2.06397555799217e-08!GO:0016126;sterol biosynthetic process;2.16043728757436e-08!GO:0006979;response to oxidative stress;2.16043728757436e-08!GO:0006413;translational initiation;2.65288361573202e-08!GO:0009310;amine catabolic process;2.67313854160298e-08!GO:0006446;regulation of translational initiation;3.05170115759011e-08!GO:0043283;biopolymer metabolic process;3.22414841342213e-08!GO:0045333;cellular respiration;3.47974248420836e-08!GO:0009060;aerobic respiration;3.53176182668306e-08!GO:0017038;protein import;3.53176182668306e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.68551332960978e-08!GO:0003743;translation initiation factor activity;5.18152594007128e-08!GO:0016887;ATPase activity;5.67129131790751e-08!GO:0009063;amino acid catabolic process;5.87462052132639e-08!GO:0005777;peroxisome;5.96501436270937e-08!GO:0042579;microbody;5.96501436270937e-08!GO:0003712;transcription cofactor activity;6.10888145396138e-08!GO:0006084;acetyl-CoA metabolic process;6.51146217569398e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;7.36569071020796e-08!GO:0000375;RNA splicing, via transesterification reactions;7.36569071020796e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.36569071020796e-08!GO:0044453;nuclear membrane part;7.42379426335805e-08!GO:0006916;anti-apoptosis;7.46243257588598e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;9.00528193905069e-08!GO:0006793;phosphorus metabolic process;1.4335887331492e-07!GO:0006796;phosphate metabolic process;1.4335887331492e-07!GO:0006099;tricarboxylic acid cycle;1.43649371670917e-07!GO:0046356;acetyl-CoA catabolic process;1.43649371670917e-07!GO:0031988;membrane-bound vesicle;1.52677812168752e-07!GO:0007049;cell cycle;1.54388370251858e-07!GO:0016829;lyase activity;1.79558995812034e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.83569567445881e-07!GO:0006695;cholesterol biosynthetic process;2.48064740640262e-07!GO:0005996;monosaccharide metabolic process;2.51543067320772e-07!GO:0016023;cytoplasmic membrane-bound vesicle;2.72152962851856e-07!GO:0015980;energy derivation by oxidation of organic compounds;2.76586576901875e-07!GO:0031965;nuclear membrane;3.00847905894273e-07!GO:0009109;coenzyme catabolic process;3.08938612531118e-07!GO:0019829;cation-transporting ATPase activity;3.12716387209982e-07!GO:0019318;hexose metabolic process;3.33301400471952e-07!GO:0051789;response to protein stimulus;3.63310079802197e-07!GO:0006986;response to unfolded protein;3.63310079802197e-07!GO:0002253;activation of immune response;3.95980057980177e-07!GO:0009611;response to wounding;3.99700128101695e-07!GO:0006006;glucose metabolic process;4.02826022518978e-07!GO:0006752;group transfer coenzyme metabolic process;4.02826022518978e-07!GO:0005770;late endosome;4.9322837211453e-07!GO:0009108;coenzyme biosynthetic process;5.00675956275869e-07!GO:0006334;nucleosome assembly;5.00825224096434e-07!GO:0007599;hemostasis;5.44744031304428e-07!GO:0031982;vesicle;5.8040594716322e-07!GO:0015986;ATP synthesis coupled proton transport;5.8683309050823e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.8683309050823e-07!GO:0008202;steroid metabolic process;5.98741634059495e-07!GO:0009259;ribonucleotide metabolic process;9.04207973358677e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;9.1733678731423e-07!GO:0005506;iron ion binding;9.26017304130766e-07!GO:0005730;nucleolus;1.08008366329426e-06!GO:0042623;ATPase activity, coupled;1.15089764382853e-06!GO:0006163;purine nucleotide metabolic process;1.28340806283662e-06!GO:0031410;cytoplasmic vesicle;1.28691301513183e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.45004967554653e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.48024835677911e-06!GO:0009719;response to endogenous stimulus;1.69234466441056e-06!GO:0006778;porphyrin metabolic process;1.83091368931394e-06!GO:0033013;tetrapyrrole metabolic process;1.83091368931394e-06!GO:0009117;nucleotide metabolic process;1.93974218101134e-06!GO:0044431;Golgi apparatus part;2.33990431457788e-06!GO:0008639;small protein conjugating enzyme activity;2.60589993338327e-06!GO:0045259;proton-transporting ATP synthase complex;2.67885059835711e-06!GO:0009150;purine ribonucleotide metabolic process;2.8203594203704e-06!GO:0030120;vesicle coat;2.91715265849953e-06!GO:0030662;coated vesicle membrane;2.91715265849953e-06!GO:0007596;blood coagulation;3.05214208779314e-06!GO:0006164;purine nucleotide biosynthetic process;3.52214159451197e-06!GO:0006323;DNA packaging;3.54136481156307e-06!GO:0004842;ubiquitin-protein ligase activity;3.6202581671186e-06!GO:0031497;chromatin assembly;3.7364882897766e-06!GO:0005643;nuclear pore;3.78980898735695e-06!GO:0051170;nuclear import;4.31407035254253e-06!GO:0016310;phosphorylation;4.80843267829678e-06!GO:0065004;protein-DNA complex assembly;4.80843267829678e-06!GO:0051276;chromosome organization and biogenesis;5.11069911084029e-06!GO:0008652;amino acid biosynthetic process;5.18404494722187e-06!GO:0000785;chromatin;5.44525970356555e-06!GO:0009260;ribonucleotide biosynthetic process;5.8341913530025e-06!GO:0006869;lipid transport;5.99085509976039e-06!GO:0042168;heme metabolic process;6.09743684471669e-06!GO:0006606;protein import into nucleus;6.14972375128652e-06!GO:0006754;ATP biosynthetic process;6.31562339531472e-06!GO:0006753;nucleoside phosphate metabolic process;6.31562339531472e-06!GO:0050817;coagulation;6.89066074653081e-06!GO:0009199;ribonucleoside triphosphate metabolic process;7.02467483789897e-06!GO:0009142;nucleoside triphosphate biosynthetic process;7.36955408229818e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;7.36955408229818e-06!GO:0009152;purine ribonucleotide biosynthetic process;7.55855308554184e-06!GO:0006333;chromatin assembly or disassembly;7.63095054603709e-06!GO:0005788;endoplasmic reticulum lumen;8.40386175725864e-06!GO:0046870;cadmium ion binding;8.4069388417958e-06!GO:0046034;ATP metabolic process;8.62671686789225e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;8.80697147036469e-06!GO:0009144;purine nucleoside triphosphate metabolic process;8.80697147036469e-06!GO:0009141;nucleoside triphosphate metabolic process;9.06763060184486e-06!GO:0065008;regulation of biological quality;9.17564134883508e-06!GO:0019787;small conjugating protein ligase activity;9.17975906140846e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;9.17975906140846e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;9.17975906140846e-06!GO:0008654;phospholipid biosynthetic process;1.11451889600466e-05!GO:0000096;sulfur amino acid metabolic process;1.16632877159741e-05!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;1.16931180678486e-05!GO:0019867;outer membrane;1.32462879980598e-05!GO:0016604;nuclear body;1.32462879980598e-05!GO:0030532;small nuclear ribonucleoprotein complex;1.4556469473175e-05!GO:0019439;aromatic compound catabolic process;1.47010465759733e-05!GO:0016044;membrane organization and biogenesis;1.47662364682961e-05!GO:0065002;intracellular protein transport across a membrane;1.5059648811443e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.58641802361849e-05!GO:0016064;immunoglobulin mediated immune response;1.73928695806027e-05!GO:0042221;response to chemical stimulus;1.78185524046806e-05!GO:0031968;organelle outer membrane;1.80213846159463e-05!GO:0003714;transcription corepressor activity;1.89728320908165e-05!GO:0006888;ER to Golgi vesicle-mediated transport;1.93939772730262e-05!GO:0044440;endosomal part;2.00014458255171e-05!GO:0010008;endosome membrane;2.00014458255171e-05!GO:0019724;B cell mediated immunity;2.13149062507086e-05!GO:0019899;enzyme binding;2.28700527887141e-05!GO:0016469;proton-transporting two-sector ATPase complex;2.34751834479359e-05!GO:0031252;leading edge;2.40939931543788e-05!GO:0000278;mitotic cell cycle;2.52629964092019e-05!GO:0022402;cell cycle process;2.58539550274178e-05!GO:0006643;membrane lipid metabolic process;2.76648682369605e-05!GO:0006366;transcription from RNA polymerase II promoter;3.07102388531385e-05!GO:0005741;mitochondrial outer membrane;3.07289554944401e-05!GO:0016853;isomerase activity;3.44101256162792e-05!GO:0048475;coated membrane;3.49011209143647e-05!GO:0030117;membrane coat;3.49011209143647e-05!GO:0006790;sulfur metabolic process;3.56221660269295e-05!GO:0042802;identical protein binding;3.76856194808117e-05!GO:0006779;porphyrin biosynthetic process;3.93105529527224e-05!GO:0033014;tetrapyrrole biosynthetic process;3.93105529527224e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;4.17450906034139e-05!GO:0015399;primary active transmembrane transporter activity;4.17450906034139e-05!GO:0009064;glutamine family amino acid metabolic process;4.4584360105393e-05!GO:0005798;Golgi-associated vesicle;5.07765543377644e-05!GO:0006487;protein amino acid N-linked glycosylation;6.18992907554454e-05!GO:0015918;sterol transport;6.18992907554454e-05!GO:0030301;cholesterol transport;6.18992907554454e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.73364654629971e-05!GO:0010467;gene expression;6.7777200994575e-05!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;7.15586478765987e-05!GO:0006879;cellular iron ion homeostasis;7.32538386168897e-05!GO:0055072;iron ion homeostasis;7.32538386168897e-05!GO:0031324;negative regulation of cellular metabolic process;7.35233303269225e-05!GO:0003924;GTPase activity;7.63927646192579e-05!GO:0022890;inorganic cation transmembrane transporter activity;8.62864331054122e-05!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;9.46054844399828e-05!GO:0007005;mitochondrion organization and biogenesis;9.60179774657963e-05!GO:0000139;Golgi membrane;9.6147403027958e-05!GO:0016567;protein ubiquitination;0.000100895628451525!GO:0006613;cotranslational protein targeting to membrane;0.000105984694283976!GO:0016881;acid-amino acid ligase activity;0.000115595225814863!GO:0019842;vitamin binding;0.000116368214832446!GO:0031960;response to corticosteroid stimulus;0.000116368214832446!GO:0000786;nucleosome;0.000120512977424485!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000122562865207357!GO:0006974;response to DNA damage stimulus;0.000122562865207357!GO:0004298;threonine endopeptidase activity;0.000123762532655301!GO:0006783;heme biosynthetic process;0.00013327463919547!GO:0044427;chromosomal part;0.000133417439814143!GO:0032446;protein modification by small protein conjugation;0.000138594509598605!GO:0009069;serine family amino acid metabolic process;0.000142904340472143!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.000152980773371241!GO:0042157;lipoprotein metabolic process;0.000174708902367069!GO:0005694;chromosome;0.000181530738879592!GO:0046983;protein dimerization activity;0.000196198091507614!GO:0006644;phospholipid metabolic process;0.000196715866191177!GO:0008361;regulation of cell size;0.000196715866191177!GO:0009605;response to external stimulus;0.000198803780450064!GO:0030867;rough endoplasmic reticulum membrane;0.000209251296948607!GO:0051540;metal cluster binding;0.000210796976345966!GO:0051536;iron-sulfur cluster binding;0.000210796976345966!GO:0009892;negative regulation of metabolic process;0.000210796976345966!GO:0033116;ER-Golgi intermediate compartment membrane;0.000210796976345966!GO:0005762;mitochondrial large ribosomal subunit;0.000218444731681354!GO:0000315;organellar large ribosomal subunit;0.000218444731681354!GO:0000314;organellar small ribosomal subunit;0.000225004268570469!GO:0005763;mitochondrial small ribosomal subunit;0.000225004268570469!GO:0051726;regulation of cell cycle;0.00022924797952769!GO:0016607;nuclear speck;0.000236220466462548!GO:0016564;transcription repressor activity;0.000236220466462548!GO:0042060;wound healing;0.000241006258537434!GO:0045454;cell redox homeostasis;0.000245240728623633!GO:0003697;single-stranded DNA binding;0.000251704176005079!GO:0000074;regulation of progression through cell cycle;0.000253840057962679!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000265520275215717!GO:0008286;insulin receptor signaling pathway;0.000267214610453111!GO:0030133;transport vesicle;0.000267489402410625!GO:0048518;positive regulation of biological process;0.000269185772754525!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000275263052300592!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000275308395926973!GO:0030036;actin cytoskeleton organization and biogenesis;0.000276782129146512!GO:0043492;ATPase activity, coupled to movement of substances;0.000278158170176139!GO:0006897;endocytosis;0.000284842761147212!GO:0010324;membrane invagination;0.000284842761147212!GO:0050657;nucleic acid transport;0.00028651106076453!GO:0051236;establishment of RNA localization;0.00028651106076453!GO:0050658;RNA transport;0.00028651106076453!GO:0016769;transferase activity, transferring nitrogenous groups;0.000290158604764745!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000293012825759538!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000293466732742612!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000316866435496608!GO:0004812;aminoacyl-tRNA ligase activity;0.000316866435496608!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000316866435496608!GO:0007243;protein kinase cascade;0.000338851045116774!GO:0050878;regulation of body fluid levels;0.000348551198585418!GO:0000245;spliceosome assembly;0.000368747408185339!GO:0006403;RNA localization;0.000368747408185339!GO:0006957;complement activation, alternative pathway;0.000384013980406458!GO:0005791;rough endoplasmic reticulum;0.000386857421011679!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000387398753354698!GO:0005048;signal sequence binding;0.000396346921625869!GO:0016049;cell growth;0.000418008621078027!GO:0051384;response to glucocorticoid stimulus;0.000418008621078027!GO:0006260;DNA replication;0.000427181596275813!GO:0019843;rRNA binding;0.000433081936853277!GO:0048471;perinuclear region of cytoplasm;0.000454330956678582!GO:0046467;membrane lipid biosynthetic process;0.000459946938164316!GO:0006650;glycerophospholipid metabolic process;0.000482786171632531!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000510518012510256!GO:0019395;fatty acid oxidation;0.000518110190698658!GO:0043038;amino acid activation;0.000522267613656857!GO:0006418;tRNA aminoacylation for protein translation;0.000522267613656857!GO:0043039;tRNA aminoacylation;0.000522267613656857!GO:0006953;acute-phase response;0.000567157745252089!GO:0005774;vacuolar membrane;0.000574839003161065!GO:0005319;lipid transporter activity;0.000588720836305304!GO:0006635;fatty acid beta-oxidation;0.000606434085679605!GO:0065009;regulation of a molecular function;0.000651278620958632!GO:0006508;proteolysis;0.000671787530996588!GO:0051920;peroxiredoxin activity;0.000711348113102759!GO:0001558;regulation of cell growth;0.000730250174630176!GO:0043566;structure-specific DNA binding;0.00074081860910838!GO:0030170;pyridoxal phosphate binding;0.000752708150390396!GO:0030218;erythrocyte differentiation;0.000758774338111526!GO:0004576;oligosaccharyl transferase activity;0.000760722616223724!GO:0006007;glucose catabolic process;0.000776817229663005!GO:0009074;aromatic amino acid family catabolic process;0.000776817229663005!GO:0000151;ubiquitin ligase complex;0.000868957591545405!GO:0016746;transferase activity, transferring acyl groups;0.000894240580627544!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000901463175906245!GO:0005525;GTP binding;0.00094595832726792!GO:0048468;cell development;0.00094595832726792!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000962649690020144!GO:0006749;glutathione metabolic process;0.000994395764251717!GO:0043623;cellular protein complex assembly;0.0010022114054928!GO:0042254;ribosome biogenesis and assembly;0.00102524254611293!GO:0044272;sulfur compound biosynthetic process;0.00104653847749242!GO:0006525;arginine metabolic process;0.00109193961823086!GO:0015036;disulfide oxidoreductase activity;0.00111899088414754!GO:0006417;regulation of translation;0.0011430388044717!GO:0008250;oligosaccharyl transferase complex;0.00118025421588317!GO:0046394;carboxylic acid biosynthetic process;0.00120752323207141!GO:0016053;organic acid biosynthetic process;0.00120752323207141!GO:0001726;ruffle;0.00122608764903522!GO:0006720;isoprenoid metabolic process;0.00125267852539269!GO:0002449;lymphocyte mediated immunity;0.00125267852539269!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00125267852539269!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00125267852539269!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00125267852539269!GO:0005765;lysosomal membrane;0.00127440617569851!GO:0001889;liver development;0.00127440617569851!GO:0046364;monosaccharide biosynthetic process;0.00127440617569851!GO:0046165;alcohol biosynthetic process;0.00127440617569851!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00128627913081013!GO:0015002;heme-copper terminal oxidase activity;0.00128627913081013!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00128627913081013!GO:0004129;cytochrome-c oxidase activity;0.00128627913081013!GO:0043284;biopolymer biosynthetic process;0.00128627913081013!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00134975314528014!GO:0009309;amine biosynthetic process;0.00136493456413556!GO:0051539;4 iron, 4 sulfur cluster binding;0.00137400182209099!GO:0002443;leukocyte mediated immunity;0.00138902623536261!GO:0051427;hormone receptor binding;0.00148416513209813!GO:0044271;nitrogen compound biosynthetic process;0.00150442827752382!GO:0044438;microbody part;0.00158650278221512!GO:0044439;peroxisomal part;0.00158650278221512!GO:0051028;mRNA transport;0.00169769606258195!GO:0006810;transport;0.00171116491989604!GO:0007040;lysosome organization and biogenesis;0.00179423063766024!GO:0051659;maintenance of mitochondrion localization;0.00181201432640561!GO:0051657;maintenance of organelle localization;0.00181201432640561!GO:0009991;response to extracellular stimulus;0.00183029037750136!GO:0044437;vacuolar part;0.00188607440736529!GO:0000097;sulfur amino acid biosynthetic process;0.00189339595675161!GO:0006954;inflammatory response;0.00193641992246308!GO:0001666;response to hypoxia;0.00202765740352552!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.0020689387244189!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00215429311237777!GO:0002684;positive regulation of immune system process;0.00216788824552415!GO:0007264;small GTPase mediated signal transduction;0.00219500186265626!GO:0006558;L-phenylalanine metabolic process;0.00223689069041!GO:0006559;L-phenylalanine catabolic process;0.00223689069041!GO:0000050;urea cycle;0.00228297238383378!GO:0043603;amide metabolic process;0.00228297238383378!GO:0019627;urea metabolic process;0.00228297238383378!GO:0008092;cytoskeletal protein binding;0.00228969780881419!GO:0016408;C-acyltransferase activity;0.00229174943360632!GO:0009165;nucleotide biosynthetic process;0.00230685801215514!GO:0009081;branched chain family amino acid metabolic process;0.00230803632841129!GO:0031647;regulation of protein stability;0.00231929790720192!GO:0009889;regulation of biosynthetic process;0.00242441764300386!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00245900967983191!GO:0031326;regulation of cellular biosynthetic process;0.00249114291873326!GO:0035257;nuclear hormone receptor binding;0.0025029222571236!GO:0030132;clathrin coat of coated pit;0.00250351092877614!GO:0018193;peptidyl-amino acid modification;0.0025103411136513!GO:0000041;transition metal ion transport;0.0025103411136513!GO:0006725;aromatic compound metabolic process;0.0025103411136513!GO:0030029;actin filament-based process;0.00252142927486819!GO:0019319;hexose biosynthetic process;0.00261496845284076!GO:0030176;integral to endoplasmic reticulum membrane;0.00270561480816232!GO:0043681;protein import into mitochondrion;0.0027211983249244!GO:0018196;peptidyl-asparagine modification;0.00276999068618722!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00276999068618722!GO:0051168;nuclear export;0.00292448433498842!GO:0051234;establishment of localization;0.00299741490362435!GO:0031667;response to nutrient levels;0.00306848042869188!GO:0045786;negative regulation of progression through cell cycle;0.00309730939939607!GO:0002682;regulation of immune system process;0.00318326449670159!GO:0005507;copper ion binding;0.00321455624830411!GO:0006281;DNA repair;0.00322931194839163!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00322931194839163!GO:0031903;microbody membrane;0.00322931194839163!GO:0005778;peroxisomal membrane;0.00322931194839163!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00322931194839163!GO:0006959;humoral immune response;0.00324215740680738!GO:0051329;interphase of mitotic cell cycle;0.00327988052595914!GO:0016747;transferase activity, transferring groups other than amino-acyl groups;0.00328208016997154!GO:0051287;NAD binding;0.00329498103874361!GO:0050778;positive regulation of immune response;0.00329773460302073!GO:0005885;Arp2/3 protein complex;0.00343983866658812!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00350944316650567!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00350944316650567!GO:0016830;carbon-carbon lyase activity;0.00356702347111976!GO:0031902;late endosome membrane;0.00358272538017663!GO:0005579;membrane attack complex;0.00359725451526424!GO:0003713;transcription coactivator activity;0.00361540653910542!GO:0016836;hydro-lyase activity;0.00367232823026439!GO:0006414;translational elongation;0.00368066649781117!GO:0016835;carbon-oxygen lyase activity;0.00370624097624437!GO:0051179;localization;0.00421113380802545!GO:0030134;ER to Golgi transport vesicle;0.0042123692561357!GO:0008299;isoprenoid biosynthetic process;0.0042123692561357!GO:0032561;guanyl ribonucleotide binding;0.0042123692561357!GO:0019001;guanyl nucleotide binding;0.0042123692561357!GO:0002252;immune effector process;0.00422273033236851!GO:0016568;chromatin modification;0.00433991399345274!GO:0008483;transaminase activity;0.00438848740323076!GO:0016791;phosphoric monoester hydrolase activity;0.00453741253490701!GO:0046474;glycerophospholipid biosynthetic process;0.00456345872126181!GO:0044275;cellular carbohydrate catabolic process;0.00471600997843388!GO:0006518;peptide metabolic process;0.00481921170539428!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00488337086649256!GO:0051235;maintenance of localization;0.00490554861245943!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00493337861730255!GO:0006672;ceramide metabolic process;0.00494039472791469!GO:0008415;acyltransferase activity;0.00503106933050909!GO:0022403;cell cycle phase;0.00503887223665523!GO:0006612;protein targeting to membrane;0.00519695897814791!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.00520731451123328!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00522954938086756!GO:0007033;vacuole organization and biogenesis;0.00525307197897011!GO:0019748;secondary metabolic process;0.00545046586877402!GO:0048487;beta-tubulin binding;0.0054728020292343!GO:0030127;COPII vesicle coat;0.00550428146424598!GO:0012507;ER to Golgi transport vesicle membrane;0.00550428146424598!GO:0006534;cysteine metabolic process;0.00555014912213485!GO:0004386;helicase activity;0.00566394421367031!GO:0008430;selenium binding;0.00568600650796752!GO:0043488;regulation of mRNA stability;0.00568825953164312!GO:0043487;regulation of RNA stability;0.00568825953164312!GO:0006595;polyamine metabolic process;0.00584356752548303!GO:0010035;response to inorganic substance;0.00588813502339785!GO:0000087;M phase of mitotic cell cycle;0.00589019914471058!GO:0008026;ATP-dependent helicase activity;0.0059636725320214!GO:0007067;mitosis;0.00624509907591119!GO:0040008;regulation of growth;0.00624509907591119!GO:0009112;nucleobase metabolic process;0.00634159755949242!GO:0004300;enoyl-CoA hydratase activity;0.00636080239206813!GO:0006527;arginine catabolic process;0.00650224521723514!GO:0009100;glycoprotein metabolic process;0.00670118608264465!GO:0006399;tRNA metabolic process;0.00685268910402246!GO:0051325;interphase;0.00699577338014283!GO:0003724;RNA helicase activity;0.00702692888731677!GO:0006694;steroid biosynthetic process;0.00740949598581838!GO:0016741;transferase activity, transferring one-carbon groups;0.00751715801034132!GO:0050790;regulation of catalytic activity;0.00760442813160717!GO:0006818;hydrogen transport;0.00766964780919473!GO:0030658;transport vesicle membrane;0.00791327003534911!GO:0008139;nuclear localization sequence binding;0.0079649823209621!GO:0043021;ribonucleoprotein binding;0.00801525685800868!GO:0050776;regulation of immune response;0.00808317622143621!GO:0003746;translation elongation factor activity;0.00808317622143621!GO:0048522;positive regulation of cellular process;0.00828235375246803!GO:0006767;water-soluble vitamin metabolic process;0.00828235375246803!GO:0006096;glycolysis;0.00838256751676289!GO:0006826;iron ion transport;0.00843586723152489!GO:0046519;sphingoid metabolic process;0.00846022437219886!GO:0031072;heat shock protein binding;0.00848242356394584!GO:0050660;FAD binding;0.00853521409594186!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00867394350951528!GO:0005667;transcription factor complex;0.00874421614681118!GO:0015992;proton transport;0.00875441398601279!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.00879162205277232!GO:0006740;NADPH regeneration;0.00882562510270897!GO:0006098;pentose-phosphate shunt;0.00882562510270897!GO:0005577;fibrinogen complex;0.0089590296360892!GO:0045792;negative regulation of cell size;0.00905926071046641!GO:0006611;protein export from nucleus;0.00912393563433847!GO:0051252;regulation of RNA metabolic process;0.00921380887873735!GO:0006733;oxidoreduction coenzyme metabolic process;0.00933168345586688!GO:0004177;aminopeptidase activity;0.00943135856824986!GO:0016051;carbohydrate biosynthetic process;0.00952335463761082!GO:0003729;mRNA binding;0.00952819032983567!GO:0009607;response to biotic stimulus;0.00967705232314442!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00982403567712437!GO:0005769;early endosome;0.00983308691806346!GO:0002018;renin-angiotensin regulation of aldosterone production;0.00983308691806346!GO:0048143;astrocyte activation;0.00983308691806346!GO:0046622;positive regulation of organ growth;0.00983308691806346!GO:0031701;angiotensin receptor binding;0.00983308691806346!GO:0031703;type 2 angiotensin receptor binding;0.00983308691806346!GO:0045723;positive regulation of fatty acid biosynthetic process;0.00983308691806346!GO:0001999;renal response to blood flow during renin-angiotensin regulation of systemic arterial blood pressure;0.00983308691806346!GO:0042756;drinking behavior;0.00983308691806346!GO:0002019;angiotensin mediated regulation of renal output;0.00983308691806346!GO:0031702;type 1 angiotensin receptor binding;0.00983308691806346!GO:0001998;angiotensin mediated vasoconstriction involved in regulation of systemic arterial blood pressure;0.00983308691806346!GO:0050811;GABA receptor binding;0.00992763317154682!GO:0030308;negative regulation of cell growth;0.00992763317154682!GO:0030027;lamellipodium;0.0100325968924468!GO:0030433;ER-associated protein catabolic process;0.0101826027914244!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0101826027914244!GO:0016481;negative regulation of transcription;0.0103757539640539!GO:0006090;pyruvate metabolic process;0.0105169452942144!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0105724087303857!GO:0006364;rRNA processing;0.0106529651180487!GO:0003995;acyl-CoA dehydrogenase activity;0.0109109107049863!GO:0016840;carbon-nitrogen lyase activity;0.0109746074032052!GO:0002250;adaptive immune response;0.011067398323993!GO:0002460;adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains;0.011067398323993!GO:0006633;fatty acid biosynthetic process;0.0111623083385658!GO:0005905;coated pit;0.0111689875861252!GO:0033344;cholesterol efflux;0.0112727737028431!GO:0008632;apoptotic program;0.0115156534499607!GO:0055088;lipid homeostasis;0.0115156534499607!GO:0030663;COPI coated vesicle membrane;0.0118685370085411!GO:0030126;COPI vesicle coat;0.0118685370085411!GO:0051301;cell division;0.0118685370085411!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0121588501432267!GO:0016811;hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides;0.0128118766287494!GO:0004029;aldehyde dehydrogenase (NAD) activity;0.012828355106868!GO:0045947;negative regulation of translational initiation;0.0128790217734055!GO:0046365;monosaccharide catabolic process;0.0129540680741147!GO:0030139;endocytic vesicle;0.0132333560423644!GO:0006607;NLS-bearing substrate import into nucleus;0.013447796421758!GO:0016563;transcription activator activity;0.013447796421758!GO:0016052;carbohydrate catabolic process;0.0137018753161583!GO:0009083;branched chain family amino acid catabolic process;0.0138870681094793!GO:0015035;protein disulfide oxidoreductase activity;0.0139565422980885!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0147415954996175!GO:0006572;tyrosine catabolic process;0.0147677483130172!GO:0009066;aspartate family amino acid metabolic process;0.0147677483130172!GO:0043065;positive regulation of apoptosis;0.0147677483130172!GO:0042627;chylomicron;0.0148744642903214!GO:0006658;phosphatidylserine metabolic process;0.0149651667586881!GO:0042594;response to starvation;0.0150340370746545!GO:0009065;glutamine family amino acid catabolic process;0.0150737707646424!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0151396395200198!GO:0016072;rRNA metabolic process;0.0155243064542002!GO:0000059;protein import into nucleus, docking;0.0156864803837281!GO:0030660;Golgi-associated vesicle membrane;0.0158127613687517!GO:0007006;mitochondrial membrane organization and biogenesis;0.0158127613687517!GO:0005758;mitochondrial intermembrane space;0.0158127613687517!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0160102166903882!GO:0030193;regulation of blood coagulation;0.0160250517103836!GO:0048500;signal recognition particle;0.016164866998121!GO:0046912;transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer;0.0163849970310877!GO:0007242;intracellular signaling cascade;0.0164938820278074!GO:0031970;organelle envelope lumen;0.0165095557594514!GO:0046164;alcohol catabolic process;0.0165518217844441!GO:0030569;chymotrypsin inhibitor activity;0.0167620862110026!GO:0003756;protein disulfide isomerase activity;0.0169306302731356!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0169306302731356!GO:0035258;steroid hormone receptor binding;0.0170090547641271!GO:0042440;pigment metabolic process;0.0170090547641271!GO:0006094;gluconeogenesis;0.0171446523821427!GO:0006402;mRNA catabolic process;0.0172360055673348!GO:0017166;vinculin binding;0.0177746576885324!GO:0031301;integral to organelle membrane;0.0178807998488237!GO:0051248;negative regulation of protein metabolic process;0.0179703816581398!GO:0005637;nuclear inner membrane;0.0179703816581398!GO:0003690;double-stranded DNA binding;0.0181326891615834!GO:0043068;positive regulation of programmed cell death;0.018634489542582!GO:0000082;G1/S transition of mitotic cell cycle;0.0188947262528062!GO:0005684;U2-dependent spliceosome;0.0189792538006335!GO:0019320;hexose catabolic process;0.0190105071622033!GO:0006516;glycoprotein catabolic process;0.0191172383306816!GO:0030659;cytoplasmic vesicle membrane;0.0192078203787197!GO:0030100;regulation of endocytosis;0.0192360016951612!GO:0006022;aminoglycan metabolic process;0.0194250668136729!GO:0009725;response to hormone stimulus;0.0206998297343109!GO:0015682;ferric iron transport;0.0209367574200874!GO:0015091;ferric iron transmembrane transporter activity;0.0209367574200874!GO:0031643;positive regulation of myelination;0.0209367574200874!GO:0016859;cis-trans isomerase activity;0.0209367574200874!GO:0030118;clathrin coat;0.0219895025266456!GO:0051651;maintenance of cellular localization;0.0222179136158136!GO:0006509;membrane protein ectodomain proteolysis;0.0226158561419401!GO:0033619;membrane protein proteolysis;0.0226158561419401!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0228839079608672!GO:0050818;regulation of coagulation;0.0230076212980438!GO:0004364;glutathione transferase activity;0.0230946252839697!GO:0050748;negative regulation of lipoprotein metabolic process;0.0231577233913967!GO:0016645;oxidoreductase activity, acting on the CH-NH group of donors;0.0231834245377744!GO:0051336;regulation of hydrolase activity;0.0236544706663588!GO:0030212;hyaluronan metabolic process;0.0239092118114153!GO:0008168;methyltransferase activity;0.0239927839848243!GO:0032508;DNA duplex unwinding;0.0241553803981519!GO:0032392;DNA geometric change;0.0241553803981519!GO:0015923;mannosidase activity;0.0242174287296784!GO:0046489;phosphoinositide biosynthetic process;0.024637018083622!GO:0007015;actin filament organization;0.0249706339695042!GO:0006984;ER-nuclear signaling pathway;0.0250816650349466!GO:0006642;triacylglycerol mobilization;0.0251696236571957!GO:0006839;mitochondrial transport;0.0251834990108251!GO:0031327;negative regulation of cellular biosynthetic process;0.0252004981447853!GO:0006563;L-serine metabolic process;0.0252946517424985!GO:0019216;regulation of lipid metabolic process;0.0253468491942301!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0256055488873285!GO:0042542;response to hydrogen peroxide;0.0260280254400687!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.0260430520238751!GO:0008154;actin polymerization and/or depolymerization;0.0264807512008915!GO:0008186;RNA-dependent ATPase activity;0.0268130120850713!GO:0016877;ligase activity, forming carbon-sulfur bonds;0.0270471032297341!GO:0051537;2 iron, 2 sulfur cluster binding;0.0273757052086176!GO:0051087;chaperone binding;0.0277193747721212!GO:0030099;myeloid cell differentiation;0.0280432931670633!GO:0016197;endosome transport;0.0291349063486147!GO:0010033;response to organic substance;0.0291707356344056!GO:0000303;response to superoxide;0.0291928420971318!GO:0046904;calcium oxalate binding;0.0292204600345943!GO:0030568;plasmin inhibitor activity;0.0292204600345943!GO:0030137;COPI-coated vesicle;0.0294896632952819!GO:0051017;actin filament bundle formation;0.0295817655307417!GO:0007265;Ras protein signal transduction;0.0296322357729513!GO:0030145;manganese ion binding;0.0298154515521892!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0298388301267761!GO:0045047;protein targeting to ER;0.0298388301267761!GO:0005869;dynactin complex;0.0311842024444287!GO:0050749;apolipoprotein E receptor binding;0.0311978793401094!GO:0031406;carboxylic acid binding;0.0314026219990335!GO:0006766;vitamin metabolic process;0.0315492019795591!GO:0030203;glycosaminoglycan metabolic process;0.0316025394222147!GO:0006739;NADP metabolic process;0.0319543963556832!GO:0006081;aldehyde metabolic process;0.0319567461448041!GO:0005792;microsome;0.0327951485588919!GO:0006769;nicotinamide metabolic process;0.033057102283818!GO:0050821;protein stabilization;0.0330718349781424!GO:0004601;peroxidase activity;0.0330718349781424!GO:0016684;oxidoreductase activity, acting on peroxide as acceptor;0.0330718349781424!GO:0006268;DNA unwinding during replication;0.0335425816920335!GO:0030384;phosphoinositide metabolic process;0.0335425816920335!GO:0012506;vesicle membrane;0.0336317805389762!GO:0042598;vesicular fraction;0.0338755888711498!GO:0005521;lamin binding;0.0341988393914385!GO:0045926;negative regulation of growth;0.034377017494789!GO:0051101;regulation of DNA binding;0.035590585955572!GO:0030503;regulation of cell redox homeostasis;0.0357246556506064!GO:0006892;post-Golgi vesicle-mediated transport;0.0360347965567885!GO:0042158;lipoprotein biosynthetic process;0.0360347965567885!GO:0000302;response to reactive oxygen species;0.0361700575227297!GO:0051346;negative regulation of hydrolase activity;0.0361700575227297!GO:0003711;transcription elongation regulator activity;0.0365908588831117!GO:0016860;intramolecular oxidoreductase activity;0.0369923401184975!GO:0005784;translocon complex;0.0374557628288673!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.037462179777825!GO:0015886;heme transport;0.0378872239599196!GO:0042219;amino acid derivative catabolic process;0.0389441091139162!GO:0016831;carboxy-lyase activity;0.0397760532039851!GO:0006541;glutamine metabolic process;0.0400608578153021!GO:0008201;heparin binding;0.040182386231283!GO:0008629;induction of apoptosis by intracellular signals;0.040365641390328!GO:0008320;protein transmembrane transporter activity;0.040368634495614!GO:0016788;hydrolase activity, acting on ester bonds;0.0404517420237012!GO:0030911;TPR domain binding;0.0412763150178065!GO:0031300;intrinsic to organelle membrane;0.0418759756924461!GO:0008312;7S RNA binding;0.0425173133425664!GO:0042803;protein homodimerization activity;0.0429847030793306!GO:0018106;peptidyl-histidine phosphorylation;0.0430957455968173!GO:0016748;succinyltransferase activity;0.0430957455968173!GO:0016810;hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds;0.0430957455968173!GO:0006026;aminoglycan catabolic process;0.0433900308106675!GO:0006027;glycosaminoglycan catabolic process;0.0433900308106675!GO:0005584;collagen type I;0.0436586967730231!GO:0030140;trans-Golgi network transport vesicle;0.0438710039851497!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0444285057944743!GO:0030128;clathrin coat of endocytic vesicle;0.044839706441123!GO:0030669;clathrin-coated endocytic vesicle membrane;0.044839706441123!GO:0030122;AP-2 adaptor complex;0.044839706441123!GO:0016453;C-acetyltransferase activity;0.0450505068042338!GO:0009116;nucleoside metabolic process;0.0453657669958633!GO:0045045;secretory pathway;0.0455290986132295!GO:0051881;regulation of mitochondrial membrane potential;0.0456544355898692!GO:0030125;clathrin vesicle coat;0.0456544355898692!GO:0030665;clathrin coated vesicle membrane;0.0456544355898692!GO:0000305;response to oxygen radical;0.0457036039274804!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0458723139437893!GO:0009070;serine family amino acid biosynthetic process;0.0458723139437893!GO:0035035;histone acetyltransferase binding;0.0458723139437893!GO:0019362;pyridine nucleotide metabolic process;0.0458723139437893!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0458779117069979!GO:0009101;glycoprotein biosynthetic process;0.0458779117069979!GO:0030195;negative regulation of blood coagulation;0.0462245130044289!GO:0030508;thiol-disulfide exchange intermediate activity;0.0464626179875461!GO:0006596;polyamine biosynthetic process;0.0469321665087965!GO:0004680;casein kinase activity;0.0470214185961319!GO:0016584;nucleosome positioning;0.0481623827390309!GO:0005938;cell cortex;0.0481758136206223!GO:0006891;intra-Golgi vesicle-mediated transport;0.0481758136206223!GO:0004873;asialoglycoprotein receptor activity;0.0487070238038853!GO:0055092;sterol homeostasis;0.0488345513270401!GO:0042632;cholesterol homeostasis;0.0488345513270401!GO:0006555;methionine metabolic process;0.04912426284416!GO:0051716;cellular response to stimulus;0.0493931902331933!GO:0045603;positive regulation of endothelial cell differentiation;0.0496589872155483
|sample_id=10086
|sample_id=10086
|sample_note=
|sample_note=
Line 76: Line 100:
|sample_tissue=liver
|sample_tissue=liver
|top_motifs=HNF1A:5.67921307299;HNF4A_NR2F1,2:5.0197101017;GATA6:4.29966717159;NR6A1:3.38984442392;TBP:3.10183761925;MTF1:2.84042109213;FOX{F1,F2,J1}:2.70562200009;RXR{A,B,G}_{NR1H2,PPAR}dimers:2.5444753983;FOXA2:2.51444929383;STAT2,4,6:2.46593951092;CUX2:1.81594844491;RORA:1.78020715954;AR:1.76588412018;ZNF423:1.37897226424;TFCP2:1.27751408833;FOXM1:1.24721733004;PPARG:1.24601240837;MYOD1:1.15178948239;STAT5{A,B}:1.09221924263;CEBPA,B_DDIT3:1.04377664293;MAZ:1.0123437096;POU6F1:0.981311739123;FOX{D1,D2}:0.967468404109;HIF1A:0.930283269522;GCM1,2:0.869548746571;SP1:0.845237083276;RBPJ:0.829960547658;GFI1:0.764679604783;TLX2:0.763484074389;HIC1:0.715258463662;bHLH_family:0.698730869108;ZNF148:0.695089831959;TFAP4:0.629267380427;MED-1{core}:0.560596812565;GLI1..3:0.555765638126;EVI1:0.542815834476;NFY{A,B,C}:0.537759244692;PAX1,9:0.537653713477;PAX5:0.524184963637;SNAI1..3:0.515576656589;LMO2:0.496148717634;POU2F1..3:0.473661615216;HLF:0.470323442492;XCPE1{core}:0.442474068732;EBF1:0.435287952968;ZEB1:0.414463614976;FOXL1:0.406757691797;FOXP3:0.404845316944;SMAD1..7,9:0.399478434223;RXR{A,B,G}:0.368663511619;NR5A1,2:0.364991369633;T:0.341295262943;DBP:0.340878334103;NR1H4:0.332541091948;LHX3,4:0.324702353542;SOX{8,9,10}:0.286237580523;TAL1_TCF{3,4,12}:0.278258116727;ATF2:0.25745799481;AIRE:0.25646210031;ALX4:0.243882377033;TFAP2{A,C}:0.214169541974;VSX1,2:0.13870147596;TOPORS:0.12730224909;HOX{A5,B5}:0.125891769075;NKX2-1,4:0.111394310138;HES1:0.11054726245;BPTF:0.108795344752;EGR1..3:0.102985315219;HAND1,2:0.101491544743;PATZ1:0.0905206799115;ESRRA:0.0872582650861;ATF6:0.0757324577088;PAX2:0.0700336578913;RXRA_VDR{dimer}:0.067102655638;MYFfamily:0.0665582996659;PBX1:0.050075156599;HMGA1,2:0.0304804079853;SPIB:-0.00662619758473;NKX3-2:-0.00682225960263;E2F1..5:-0.0336086723258;PAX6:-0.0700616707308;NFIL3:-0.0808187798672;SRF:-0.0869181330204;ATF5_CREB3:-0.0910338630412;TLX1..3_NFIC{dimer}:-0.0961585305492;ONECUT1,2:-0.0986907281201;IRF7:-0.114527040728;RREB1:-0.126130559715;NFE2L2:-0.132677793319;NFE2:-0.13429139326;FOX{I1,J2}:-0.149443090757;ATF4:-0.151818114015;MEF2{A,B,C,D}:-0.15798077784;ZIC1..3:-0.160010722402;FOXP1:-0.179228060999;EP300:-0.183461684406;ETS1,2:-0.195408376144;MYB:-0.210106119766;NHLH1,2:-0.217900653712;SPI1:-0.226798919064;HOXA9_MEIS1:-0.232502159235;REST:-0.234275873036;MAFB:-0.235812822923;MTE{core}:-0.241925351561;MYBL2:-0.259842907609;SREBF1,2:-0.265792372184;ADNP_IRX_SIX_ZHX:-0.296509349432;GTF2A1,2:-0.302324075116;CREB1:-0.319107706219;NFKB1_REL_RELA:-0.32408285643;UFEwm:-0.324905176655;IRF1,2:-0.332507312514;TGIF1:-0.336546990232;TFAP2B:-0.36079594344;NFE2L1:-0.369356601987;KLF4:-0.433634918068;JUN:-0.440703414352;BREu{core}:-0.4530937615;TBX4,5:-0.455974321597;SOX5:-0.473552720869;NANOG{mouse}:-0.483681689538;GTF2I:-0.504245356997;POU3F1..4:-0.513371201297;BACH2:-0.513410033463;RUNX1..3:-0.534491655807;IKZF2:-0.552752447267;ELF1,2,4:-0.59282501573;NFIX:-0.600797266441;POU1F1:-0.606624227254;TP53:-0.617888804565;ZNF238:-0.619260737452;ZNF143:-0.644530558189;OCT4_SOX2{dimer}:-0.644813816226;GZF1:-0.647798016095;IKZF1:-0.657556264199;FOS_FOS{B,L1}_JUN{B,D}:-0.67635121757;ARID5B:-0.702452046385;TEAD1:-0.757866142497;CRX:-0.769650152343;PDX1:-0.786800921117;MZF1:-0.793772364653;GFI1B:-0.797252283794;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.799451104071;NANOG:-0.802900256399;FOXQ1:-0.80676788913;ZFP161:-0.823083818154;FOSL2:-0.826097924188;AHR_ARNT_ARNT2:-0.828242299671;FOXD3:-0.862977466559;NKX2-3_NKX2-5:-0.883758702385;NFATC1..3:-0.891131074228;SOX17:-0.893644261134;EN1,2:-0.908255574844;FOXO1,3,4:-0.960385340151;ALX1:-1.0014103737;GATA4:-1.00858612215;PAX3,7:-1.04040320989;POU5F1:-1.06448494867;HOX{A4,D4}:-1.07339379187;HMX1:-1.10873410741;HOX{A6,A7,B6,B7}:-1.1189107126;FOXN1:-1.12161539184;LEF1_TCF7_TCF7L1,2:-1.12451447584;NR3C1:-1.13832300423;YY1:-1.15377751563;DMAP1_NCOR{1,2}_SMARC:-1.1898818562;ZBTB16:-1.19937153023;SOX2:-1.20734105598;ESR1:-1.25304955806;ZBTB6:-1.26098040342;NRF1:-1.26838854184;PAX4:-1.29546813621;XBP1:-1.30045896132;SPZ1:-1.33351838421;ZNF384:-1.36578384436;TFDP1:-1.42996860817;RFX1:-1.43301372986;PRRX1,2:-1.45159842225;CDX1,2,4:-1.46066574572;PRDM1:-1.50173205534;HSF1,2:-1.50197045971;STAT1,3:-1.60742252934;NKX3-1:-1.68620676187;RFX2..5_RFXANK_RFXAP:-1.74728195781;TEF:-1.80127956574;PITX1..3:-1.92345139679;CDC5L:-1.99103153716;HBP1_HMGB_SSRP1_UBTF:-2.05657574349;ELK1,4_GABP{A,B1}:-2.16706971621;NKX2-2,8:-2.5140220838;PAX8:-2.63194804562;NKX6-1,2:-2.94760728522
|top_motifs=HNF1A:5.67921307299;HNF4A_NR2F1,2:5.0197101017;GATA6:4.29966717159;NR6A1:3.38984442392;TBP:3.10183761925;MTF1:2.84042109213;FOX{F1,F2,J1}:2.70562200009;RXR{A,B,G}_{NR1H2,PPAR}dimers:2.5444753983;FOXA2:2.51444929383;STAT2,4,6:2.46593951092;CUX2:1.81594844491;RORA:1.78020715954;AR:1.76588412018;ZNF423:1.37897226424;TFCP2:1.27751408833;FOXM1:1.24721733004;PPARG:1.24601240837;MYOD1:1.15178948239;STAT5{A,B}:1.09221924263;CEBPA,B_DDIT3:1.04377664293;MAZ:1.0123437096;POU6F1:0.981311739123;FOX{D1,D2}:0.967468404109;HIF1A:0.930283269522;GCM1,2:0.869548746571;SP1:0.845237083276;RBPJ:0.829960547658;GFI1:0.764679604783;TLX2:0.763484074389;HIC1:0.715258463662;bHLH_family:0.698730869108;ZNF148:0.695089831959;TFAP4:0.629267380427;MED-1{core}:0.560596812565;GLI1..3:0.555765638126;EVI1:0.542815834476;NFY{A,B,C}:0.537759244692;PAX1,9:0.537653713477;PAX5:0.524184963637;SNAI1..3:0.515576656589;LMO2:0.496148717634;POU2F1..3:0.473661615216;HLF:0.470323442492;XCPE1{core}:0.442474068732;EBF1:0.435287952968;ZEB1:0.414463614976;FOXL1:0.406757691797;FOXP3:0.404845316944;SMAD1..7,9:0.399478434223;RXR{A,B,G}:0.368663511619;NR5A1,2:0.364991369633;T:0.341295262943;DBP:0.340878334103;NR1H4:0.332541091948;LHX3,4:0.324702353542;SOX{8,9,10}:0.286237580523;TAL1_TCF{3,4,12}:0.278258116727;ATF2:0.25745799481;AIRE:0.25646210031;ALX4:0.243882377033;TFAP2{A,C}:0.214169541974;VSX1,2:0.13870147596;TOPORS:0.12730224909;HOX{A5,B5}:0.125891769075;NKX2-1,4:0.111394310138;HES1:0.11054726245;BPTF:0.108795344752;EGR1..3:0.102985315219;HAND1,2:0.101491544743;PATZ1:0.0905206799115;ESRRA:0.0872582650861;ATF6:0.0757324577088;PAX2:0.0700336578913;RXRA_VDR{dimer}:0.067102655638;MYFfamily:0.0665582996659;PBX1:0.050075156599;HMGA1,2:0.0304804079853;SPIB:-0.00662619758473;NKX3-2:-0.00682225960263;E2F1..5:-0.0336086723258;PAX6:-0.0700616707308;NFIL3:-0.0808187798672;SRF:-0.0869181330204;ATF5_CREB3:-0.0910338630412;TLX1..3_NFIC{dimer}:-0.0961585305492;ONECUT1,2:-0.0986907281201;IRF7:-0.114527040728;RREB1:-0.126130559715;NFE2L2:-0.132677793319;NFE2:-0.13429139326;FOX{I1,J2}:-0.149443090757;ATF4:-0.151818114015;MEF2{A,B,C,D}:-0.15798077784;ZIC1..3:-0.160010722402;FOXP1:-0.179228060999;EP300:-0.183461684406;ETS1,2:-0.195408376144;MYB:-0.210106119766;NHLH1,2:-0.217900653712;SPI1:-0.226798919064;HOXA9_MEIS1:-0.232502159235;REST:-0.234275873036;MAFB:-0.235812822923;MTE{core}:-0.241925351561;MYBL2:-0.259842907609;SREBF1,2:-0.265792372184;ADNP_IRX_SIX_ZHX:-0.296509349432;GTF2A1,2:-0.302324075116;CREB1:-0.319107706219;NFKB1_REL_RELA:-0.32408285643;UFEwm:-0.324905176655;IRF1,2:-0.332507312514;TGIF1:-0.336546990232;TFAP2B:-0.36079594344;NFE2L1:-0.369356601987;KLF4:-0.433634918068;JUN:-0.440703414352;BREu{core}:-0.4530937615;TBX4,5:-0.455974321597;SOX5:-0.473552720869;NANOG{mouse}:-0.483681689538;GTF2I:-0.504245356997;POU3F1..4:-0.513371201297;BACH2:-0.513410033463;RUNX1..3:-0.534491655807;IKZF2:-0.552752447267;ELF1,2,4:-0.59282501573;NFIX:-0.600797266441;POU1F1:-0.606624227254;TP53:-0.617888804565;ZNF238:-0.619260737452;ZNF143:-0.644530558189;OCT4_SOX2{dimer}:-0.644813816226;GZF1:-0.647798016095;IKZF1:-0.657556264199;FOS_FOS{B,L1}_JUN{B,D}:-0.67635121757;ARID5B:-0.702452046385;TEAD1:-0.757866142497;CRX:-0.769650152343;PDX1:-0.786800921117;MZF1:-0.793772364653;GFI1B:-0.797252283794;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.799451104071;NANOG:-0.802900256399;FOXQ1:-0.80676788913;ZFP161:-0.823083818154;FOSL2:-0.826097924188;AHR_ARNT_ARNT2:-0.828242299671;FOXD3:-0.862977466559;NKX2-3_NKX2-5:-0.883758702385;NFATC1..3:-0.891131074228;SOX17:-0.893644261134;EN1,2:-0.908255574844;FOXO1,3,4:-0.960385340151;ALX1:-1.0014103737;GATA4:-1.00858612215;PAX3,7:-1.04040320989;POU5F1:-1.06448494867;HOX{A4,D4}:-1.07339379187;HMX1:-1.10873410741;HOX{A6,A7,B6,B7}:-1.1189107126;FOXN1:-1.12161539184;LEF1_TCF7_TCF7L1,2:-1.12451447584;NR3C1:-1.13832300423;YY1:-1.15377751563;DMAP1_NCOR{1,2}_SMARC:-1.1898818562;ZBTB16:-1.19937153023;SOX2:-1.20734105598;ESR1:-1.25304955806;ZBTB6:-1.26098040342;NRF1:-1.26838854184;PAX4:-1.29546813621;XBP1:-1.30045896132;SPZ1:-1.33351838421;ZNF384:-1.36578384436;TFDP1:-1.42996860817;RFX1:-1.43301372986;PRRX1,2:-1.45159842225;CDX1,2,4:-1.46066574572;PRDM1:-1.50173205534;HSF1,2:-1.50197045971;STAT1,3:-1.60742252934;NKX3-1:-1.68620676187;RFX2..5_RFXANK_RFXAP:-1.74728195781;TEF:-1.80127956574;PITX1..3:-1.92345139679;CDC5L:-1.99103153716;HBP1_HMGB_SSRP1_UBTF:-2.05657574349;ELK1,4_GABP{A,B1}:-2.16706971621;NKX2-2,8:-2.5140220838;PAX8:-2.63194804562;NKX6-1,2:-2.94760728522
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10086-102B5;search_select_hide=table117:FF:10086-102B5
}}
}}

Latest revision as of 12:21, 3 June 2020

Name:liver, fetal, pool1
Species:Human (Homo sapiens)
Library ID:CNhs11798
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueliver
dev stage22-40 weeks fetus
sexmixed
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyClontech
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number8101369A-6
catalog numberCat: 636643 Lot: 8101369A-6
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004877
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11798 CAGE DRX008675 DRR009547
Accession ID Hg19

Library idBAMCTSS
CNhs11798 DRZ000972 DRZ002357
Accession ID Hg38

Library idBAMCTSS
CNhs11798 DRZ012322 DRZ013707
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.178
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.00625
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small1.346
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.0826
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes1.418
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0587
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.208
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.365
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0.562
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.42
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue1.154
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.983
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.194
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.361
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.059
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.204
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0.366
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0.366
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0.562
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11798

Jaspar motifP-value
MA0002.20.647
MA0003.10.0476
MA0004.10.439
MA0006.10.118
MA0007.10.0092
MA0009.10.36
MA0014.10.336
MA0017.12.07006e-20
MA0018.20.506
MA0019.10.468
MA0024.10.819
MA0025.10.314
MA0027.10.988
MA0028.12.27048e-5
MA0029.10.0847
MA0030.10.00835
MA0031.10.0315
MA0035.27.30161e-15
MA0038.10.464
MA0039.20.178
MA0040.10.749
MA0041.10.187
MA0042.10.662
MA0043.10.48
MA0046.11.10993e-86
MA0047.25.65882e-5
MA0048.10.343
MA0050.10.157
MA0051.10.0355
MA0052.10.0763
MA0055.10.958
MA0057.10.449
MA0058.10.442
MA0059.10.348
MA0060.10.075
MA0061.10.26
MA0062.23.35318e-8
MA0065.22.67848e-9
MA0066.10.0402
MA0067.10.14
MA0068.10.299
MA0069.10.469
MA0070.10.25
MA0071.10.0439
MA0072.10.0465
MA0073.10.913
MA0074.10.625
MA0076.12.24788e-6
MA0077.10.713
MA0078.10.82
MA0079.20.455
MA0080.20.0158
MA0081.10.274
MA0083.10.876
MA0084.10.772
MA0087.10.998
MA0088.10.241
MA0090.10.549
MA0091.10.214
MA0092.10.348
MA0093.10.412
MA0099.21.08741e-4
MA0100.10.917
MA0101.10.154
MA0102.20.78
MA0103.10.0437
MA0104.20.823
MA0105.10.651
MA0106.10.722
MA0107.10.0696
MA0108.22.5352e-20
MA0111.10.871
MA0112.26.10911e-4
MA0113.10.101
MA0114.15.11278e-20
MA0115.17.13072e-6
MA0116.10.0359
MA0117.10.601
MA0119.10.58
MA0122.10.502
MA0124.10.946
MA0125.10.208
MA0131.10.469
MA0135.10.217
MA0136.14.38163e-4
MA0137.20.121
MA0138.20.0838
MA0139.10.779
MA0140.11.33827e-18
MA0141.17.25808e-4
MA0142.10.126
MA0143.10.812
MA0144.10.0157
MA0145.10.196
MA0146.10.0143
MA0147.10.981
MA0148.10.00185
MA0149.10.949
MA0150.10.951
MA0152.10.0177
MA0153.11.0556e-41
MA0154.10.1
MA0155.10.0391
MA0156.14.46873e-4
MA0157.10.131
MA0159.10.013
MA0160.10.00818
MA0162.10.258
MA0163.10.293
MA0164.10.488
MA0258.10.00109
MA0259.10.486



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11798

Novel motifP-value
10.464
100.879
1000.253
1010.372
1020.209
1030.185
1040.153
1050.303
1060.00347
1070.0209
1080.606
1090.185
110.113
1100.686
1110.962
1120.174
1135.36455e-4
1140.289
1150.628
1160.493
1170.734
1180.401
1190.0983
120.789
1200.499
1210.581
1220.959
1230.312
1240.468
1250.497
1260.199
1270.822
1280.101
1290.559
130.193
1300.0344
1310.42
1320.265
1330.506
1340.515
1350.892
1360.49
1370.336
1380.995
1390.24
140.849
1400.704
1410.0406
1420.231
1430.0633
1440.459
1450.189
1460.339
1470.413
1480.363
1490.238
150.632
1500.748
1510.306
1520.0478
1530.685
1540.364
1550.0473
1560.9
1570.695
1580.729
1590.969
160.272
1600.0134
1610.971
1620.197
1630.437
1640.654
1650.0628
1660.705
1670.757
1680.388
1690.0199
170.355
180.93
190.0126
20.239
200.688
210.255
220.0596
230.114
240.793
250.621
260.307
270.64
280.663
290.712
30.576
300.332
310.303
320.0184
330.56
340.222
350.891
360.359
370.965
380.309
390.278
40.522
400.0064
410.415
420.949
430.152
446.86838e-4
450.0976
460.183
470.544
480.283
490.134
50.575
500.504
510.635
520.0436
530.794
540.402
550.519
560.462
570.81
580.43
590.0463
60.663
600.0203
610.631
620.315
630.479
640.27
650.102
660.605
670.222
680.767
690.155
70.0278
700.0553
710.291
720.668
730.0838
740.163
750.486
760.549
770.0496
780.078
790.957
80.224
800.784
810.978
820.657
830.759
840.276
850.232
860.848
870.656
880.584
890.287
90.479
900.745
910.278
920.214
930.528
940.302
950.557
960.149
970.475
980.736
990.139



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11798


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002107 (liver)
0002100 (trunk)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010086 (human liver - fetal sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0001041 (foregut)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0003104 (mesenchyme)
UBERON:0004161 (septum transversum)
UBERON:0009497 (epithelium of foregut-midgut junction)
UBERON:0010316 (germ layer / neural crest)

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