FF:11541-120B2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005129 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008510;DRR009382;DRZ000807;DRZ002192;DRZ012157;DRZ013542 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001638,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0010260,UBERON:0003920,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0010317,UBERON:0007798,UBERON:0002066,UBERON:0004535,UBERON:0004537,UBERON:0004582,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002588 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000177 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Vein%252c%2520donor1.CNhs12597.11541-120B2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Vein%252c%2520donor1.CNhs12597.11541-120B2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Vein%252c%2520donor1.CNhs12597.11541-120B2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Vein%252c%2520donor1.CNhs12597.11541-120B2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Vein%252c%2520donor1.CNhs12597.11541-120B2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11541-120B2 | |id=FF:11541-120B2 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000177 | ||
|is_obsolete= | |||
|library_id=CNhs12597 | |||
|library_id_phase_based=2:CNhs12597 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11541 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11541 | |||
|name=Smooth Muscle Cells - Umbilical Vein, donor1 | |name=Smooth Muscle Cells - Umbilical Vein, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12597,LSID912,release011,COMPLETED | |profile_hcage=CNhs12597,LSID912,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=120 | |rna_box=120 | ||
|rna_catalog_number=SC8025 | |rna_catalog_number=SC8025 | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.53828002570372e-267!GO:0043226;organelle;1.01712047855319e-214!GO:0043229;intracellular organelle;1.96467074010521e-214!GO:0043231;intracellular membrane-bound organelle;5.02754641736418e-211!GO:0043227;membrane-bound organelle;1.23439061508745e-210!GO:0005737;cytoplasm;4.7861279543269e-196!GO:0044422;organelle part;2.12456649504739e-162!GO:0044446;intracellular organelle part;6.43280395299155e-161!GO:0044444;cytoplasmic part;1.51870274814527e-137!GO:0032991;macromolecular complex;5.50698623088902e-113!GO:0030529;ribonucleoprotein complex;4.37407718288919e-98!GO:0044237;cellular metabolic process;1.3365780932242e-95!GO:0044238;primary metabolic process;2.82042920150192e-95!GO:0005634;nucleus;2.11195017847742e-89!GO:0043170;macromolecule metabolic process;3.14917355193397e-89!GO:0044428;nuclear part;5.19510317317306e-83!GO:0043233;organelle lumen;2.5617778198522e-81!GO:0031974;membrane-enclosed lumen;2.5617778198522e-81!GO:0005515;protein binding;3.49231770594594e-78!GO:0003723;RNA binding;1.79277973062943e-77!GO:0005739;mitochondrion;6.16698528836374e-70!GO:0005840;ribosome;2.17411711405891e-58!GO:0043234;protein complex;1.1551917026068e-56!GO:0016043;cellular component organization and biogenesis;8.09565073912665e-55!GO:0006412;translation;3.77558632610168e-54!GO:0006396;RNA processing;4.74270903735026e-54!GO:0003735;structural constituent of ribosome;2.01115026126443e-51!GO:0043283;biopolymer metabolic process;3.5084041071415e-50!GO:0031090;organelle membrane;3.84160663956949e-50!GO:0019538;protein metabolic process;6.99032460140475e-49!GO:0031981;nuclear lumen;1.23544345438326e-48!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.59971354135124e-47!GO:0010467;gene expression;5.64049698398648e-47!GO:0015031;protein transport;8.80448481119032e-47!GO:0033036;macromolecule localization;2.02122945149308e-46!GO:0044429;mitochondrial part;4.84323242277876e-46!GO:0009058;biosynthetic process;2.51558802366598e-44!GO:0044260;cellular macromolecule metabolic process;9.88418837879228e-44!GO:0033279;ribosomal subunit;1.0183028588704e-43!GO:0044267;cellular protein metabolic process;2.82442198801459e-43!GO:0043228;non-membrane-bound organelle;3.66849043909626e-43!GO:0043232;intracellular non-membrane-bound organelle;3.66849043909626e-43!GO:0045184;establishment of protein localization;6.78243564744939e-43!GO:0031967;organelle envelope;8.57021132297034e-43!GO:0008104;protein localization;1.06365511839162e-42!GO:0031975;envelope;2.23010026382137e-42!GO:0016071;mRNA metabolic process;2.58488466774307e-42!GO:0009059;macromolecule biosynthetic process;1.28561466910637e-41!GO:0005829;cytosol;8.33304904385575e-41!GO:0044249;cellular biosynthetic process;1.96757265197982e-40!GO:0006996;organelle organization and biogenesis;1.02005316440404e-39!GO:0008380;RNA splicing;1.72371756805918e-39!GO:0065003;macromolecular complex assembly;6.02125918579814e-38!GO:0006397;mRNA processing;1.44713723909448e-37!GO:0006259;DNA metabolic process;1.96567412770719e-36!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.84844537642702e-36!GO:0046907;intracellular transport;8.28048351480475e-36!GO:0022607;cellular component assembly;5.77923596492783e-34!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.37497854527305e-32!GO:0007049;cell cycle;8.19008859739515e-32!GO:0006886;intracellular protein transport;1.24066579831371e-30!GO:0005654;nucleoplasm;3.35190232278389e-30!GO:0005681;spliceosome;3.55155164269529e-29!GO:0005740;mitochondrial envelope;5.14349351612402e-29!GO:0003676;nucleic acid binding;6.95847253548772e-29!GO:0031966;mitochondrial membrane;5.04651863562467e-27!GO:0019866;organelle inner membrane;1.45172158923053e-26!GO:0044445;cytosolic part;6.28613148732687e-26!GO:0005743;mitochondrial inner membrane;1.37732087078662e-24!GO:0000278;mitotic cell cycle;1.98886096037427e-24!GO:0044451;nucleoplasm part;2.94878801580634e-24!GO:0000166;nucleotide binding;4.84238171953509e-24!GO:0022402;cell cycle process;6.01359296495754e-24!GO:0051649;establishment of cellular localization;1.53054086671973e-23!GO:0006457;protein folding;1.53054086671973e-23!GO:0016462;pyrophosphatase activity;1.98087844671409e-23!GO:0051641;cellular localization;2.05095572046971e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.29340584992563e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;3.73505474391584e-23!GO:0015935;small ribosomal subunit;1.1648088699155e-22!GO:0017111;nucleoside-triphosphatase activity;1.63615609670936e-22!GO:0006119;oxidative phosphorylation;1.73389667096679e-22!GO:0015934;large ribosomal subunit;4.40588239818921e-22!GO:0012505;endomembrane system;7.3359745654566e-22!GO:0022618;protein-RNA complex assembly;1.80777614237299e-21!GO:0005694;chromosome;3.10567166201782e-21!GO:0006974;response to DNA damage stimulus;3.76336490658075e-21!GO:0044455;mitochondrial membrane part;6.17996372590853e-21!GO:0031980;mitochondrial lumen;1.44658681149817e-20!GO:0005759;mitochondrial matrix;1.44658681149817e-20!GO:0016070;RNA metabolic process;4.12042218131203e-20!GO:0048770;pigment granule;1.90956461228543e-19!GO:0042470;melanosome;1.90956461228543e-19!GO:0044427;chromosomal part;2.83244279902115e-19!GO:0005783;endoplasmic reticulum;3.14588124133407e-19!GO:0005730;nucleolus;4.92468995657895e-19!GO:0000087;M phase of mitotic cell cycle;5.0297139828186e-19!GO:0022403;cell cycle phase;7.13463243200921e-19!GO:0007067;mitosis;1.32782762096971e-18!GO:0008135;translation factor activity, nucleic acid binding;4.17605796328853e-18!GO:0051301;cell division;5.26666355108287e-18!GO:0006281;DNA repair;1.29974774125571e-17!GO:0005746;mitochondrial respiratory chain;3.34403406277486e-17!GO:0051276;chromosome organization and biogenesis;6.11503882154079e-17!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);7.62503070668865e-17!GO:0000502;proteasome complex (sensu Eukaryota);8.86886519992011e-17!GO:0032553;ribonucleotide binding;9.32812539835892e-17!GO:0032555;purine ribonucleotide binding;9.32812539835892e-17!GO:0016874;ligase activity;1.15458830612201e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.43239269946106e-16!GO:0017076;purine nucleotide binding;3.20542151223037e-16!GO:0044432;endoplasmic reticulum part;3.48720972849774e-16!GO:0005761;mitochondrial ribosome;3.72655691859034e-16!GO:0000313;organellar ribosome;3.72655691859034e-16!GO:0006512;ubiquitin cycle;5.79029826110683e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;1.03121892789349e-15!GO:0000279;M phase;1.04164985511185e-15!GO:0044265;cellular macromolecule catabolic process;1.06484989843466e-15!GO:0008134;transcription factor binding;1.35834548181955e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.41045590112532e-15!GO:0042254;ribosome biogenesis and assembly;1.71606578299724e-15!GO:0019941;modification-dependent protein catabolic process;1.89086604754288e-15!GO:0043632;modification-dependent macromolecule catabolic process;1.89086604754288e-15!GO:0009719;response to endogenous stimulus;2.35337347170764e-15!GO:0006511;ubiquitin-dependent protein catabolic process;2.35498765803139e-15!GO:0043285;biopolymer catabolic process;2.43111451058839e-15!GO:0005794;Golgi apparatus;2.43332249783996e-15!GO:0051186;cofactor metabolic process;2.44573481955871e-15!GO:0044257;cellular protein catabolic process;3.02916738741639e-15!GO:0006605;protein targeting;5.59688195587326e-15!GO:0050136;NADH dehydrogenase (quinone) activity;5.7525452166978e-15!GO:0003954;NADH dehydrogenase activity;5.7525452166978e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;5.7525452166978e-15!GO:0051082;unfolded protein binding;7.39650149623591e-15!GO:0003743;translation initiation factor activity;1.00102280040145e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;1.00102280040145e-14!GO:0000375;RNA splicing, via transesterification reactions;1.00102280040145e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.00102280040145e-14!GO:0005635;nuclear envelope;2.03969610005453e-14!GO:0048193;Golgi vesicle transport;2.16541574741974e-14!GO:0006413;translational initiation;3.52624527068076e-14!GO:0009057;macromolecule catabolic process;5.32171690419556e-14!GO:0006260;DNA replication;5.95044751813267e-14!GO:0044248;cellular catabolic process;1.16238677059248e-13!GO:0042775;organelle ATP synthesis coupled electron transport;1.16238677059248e-13!GO:0042773;ATP synthesis coupled electron transport;1.16238677059248e-13!GO:0031965;nuclear membrane;1.20401036581863e-13!GO:0005524;ATP binding;1.23047816919231e-13!GO:0044453;nuclear membrane part;1.50339054005466e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;1.50852478284474e-13!GO:0030163;protein catabolic process;1.50852478284474e-13!GO:0030964;NADH dehydrogenase complex (quinone);2.76748483443258e-13!GO:0045271;respiratory chain complex I;2.76748483443258e-13!GO:0005747;mitochondrial respiratory chain complex I;2.76748483443258e-13!GO:0032559;adenyl ribonucleotide binding;3.29404667758663e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.66189805464379e-13!GO:0006323;DNA packaging;5.73672719841858e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.63150144338537e-13!GO:0030554;adenyl nucleotide binding;1.45384064689235e-12!GO:0065004;protein-DNA complex assembly;1.61092871036981e-12!GO:0016604;nuclear body;2.20142105760747e-12!GO:0000074;regulation of progression through cell cycle;3.2882379671858e-12!GO:0016192;vesicle-mediated transport;3.88176991443318e-12!GO:0006732;coenzyme metabolic process;3.9493621819574e-12!GO:0051726;regulation of cell cycle;4.69383073853111e-12!GO:0005793;ER-Golgi intermediate compartment;8.89376607364346e-12!GO:0006333;chromatin assembly or disassembly;1.57477817396745e-11!GO:0043412;biopolymer modification;1.58520922143898e-11!GO:0006446;regulation of translational initiation;2.01378267795834e-11!GO:0000785;chromatin;2.21348612620316e-11!GO:0042623;ATPase activity, coupled;2.30636751829206e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.328741764843e-11!GO:0009259;ribonucleotide metabolic process;2.74120397820453e-11!GO:0016887;ATPase activity;3.61489276996493e-11!GO:0005643;nuclear pore;5.52919221191402e-11!GO:0006163;purine nucleotide metabolic process;5.94418077172842e-11!GO:0004386;helicase activity;6.32376617810901e-11!GO:0005789;endoplasmic reticulum membrane;8.14823788914348e-11!GO:0015630;microtubule cytoskeleton;1.20175887339945e-10!GO:0006913;nucleocytoplasmic transport;1.30051421147702e-10!GO:0009150;purine ribonucleotide metabolic process;2.67008285984556e-10!GO:0006399;tRNA metabolic process;2.70250359160737e-10!GO:0051169;nuclear transport;3.34118040361013e-10!GO:0006164;purine nucleotide biosynthetic process;3.37291805883856e-10!GO:0009055;electron carrier activity;3.45600440111601e-10!GO:0065002;intracellular protein transport across a membrane;3.4737515916941e-10!GO:0006364;rRNA processing;3.59350086592376e-10!GO:0008565;protein transporter activity;4.04739173538057e-10!GO:0016607;nuclear speck;4.16070890032298e-10!GO:0009260;ribonucleotide biosynthetic process;4.5344422202725e-10!GO:0006464;protein modification process;4.95249268309507e-10!GO:0008026;ATP-dependent helicase activity;6.48433844901278e-10!GO:0006334;nucleosome assembly;7.58638092434987e-10!GO:0003712;transcription cofactor activity;7.94219606505389e-10!GO:0016072;rRNA metabolic process;9.32323172649904e-10!GO:0050657;nucleic acid transport;9.82426073305547e-10!GO:0051236;establishment of RNA localization;9.82426073305547e-10!GO:0050658;RNA transport;9.82426073305547e-10!GO:0006403;RNA localization;1.23168958082933e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.27403034262795e-09!GO:0009060;aerobic respiration;1.41970743677522e-09!GO:0009152;purine ribonucleotide biosynthetic process;1.43949727609198e-09!GO:0048523;negative regulation of cellular process;2.32336078848213e-09!GO:0003924;GTPase activity;2.51901343132037e-09!GO:0006461;protein complex assembly;2.51901343132037e-09!GO:0006366;transcription from RNA polymerase II promoter;2.95342867228306e-09!GO:0012501;programmed cell death;3.34128394191184e-09!GO:0046930;pore complex;3.62728705445033e-09!GO:0050794;regulation of cellular process;3.80561989192209e-09!GO:0009141;nucleoside triphosphate metabolic process;4.19099424989862e-09!GO:0031497;chromatin assembly;4.58199209048319e-09!GO:0009199;ribonucleoside triphosphate metabolic process;4.68612680888774e-09!GO:0008639;small protein conjugating enzyme activity;5.07847045881991e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;6.24216978619534e-09!GO:0006888;ER to Golgi vesicle-mediated transport;6.29067776191954e-09!GO:0045333;cellular respiration;6.61522967067604e-09!GO:0006915;apoptosis;8.27650057482357e-09!GO:0004842;ubiquitin-protein ligase activity;9.0062269271415e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;9.18590099691321e-09!GO:0009144;purine nucleoside triphosphate metabolic process;9.18590099691321e-09!GO:0030532;small nuclear ribonucleoprotein complex;9.68645082682577e-09!GO:0043687;post-translational protein modification;1.4626228682301e-08!GO:0019787;small conjugating protein ligase activity;1.59612261544188e-08!GO:0043566;structure-specific DNA binding;1.61920090964966e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.6800532051554e-08!GO:0003697;single-stranded DNA binding;1.80233392299533e-08!GO:0017038;protein import;1.95713375957893e-08!GO:0005819;spindle;1.98100439384466e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.20242609244138e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.21758894939797e-08!GO:0004812;aminoacyl-tRNA ligase activity;2.21758894939797e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.21758894939797e-08!GO:0043038;amino acid activation;2.93543696286465e-08!GO:0006418;tRNA aminoacylation for protein translation;2.93543696286465e-08!GO:0043039;tRNA aminoacylation;2.93543696286465e-08!GO:0015986;ATP synthesis coupled proton transport;3.16490668814784e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.16490668814784e-08!GO:0009142;nucleoside triphosphate biosynthetic process;3.43923028405458e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.43923028405458e-08!GO:0006099;tricarboxylic acid cycle;4.20564957300925e-08!GO:0046356;acetyl-CoA catabolic process;4.20564957300925e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.61343201979507e-08!GO:0008219;cell death;5.05838079479104e-08!GO:0016265;death;5.05838079479104e-08!GO:0051028;mRNA transport;5.85928486962441e-08!GO:0005788;endoplasmic reticulum lumen;6.43851749970524e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.85681720966279e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.85681720966279e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;7.33192419890027e-08!GO:0046034;ATP metabolic process;7.96389189667085e-08!GO:0009056;catabolic process;1.0453924428217e-07!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.16273162230648e-07!GO:0006084;acetyl-CoA metabolic process;1.20015084561715e-07!GO:0019829;cation-transporting ATPase activity;1.38814780527954e-07!GO:0030120;vesicle coat;1.53439098392429e-07!GO:0030662;coated vesicle membrane;1.53439098392429e-07!GO:0016859;cis-trans isomerase activity;1.61531943631635e-07!GO:0009109;coenzyme catabolic process;1.62065505680296e-07!GO:0048519;negative regulation of biological process;1.87307895807607e-07!GO:0016853;isomerase activity;1.94156490314872e-07!GO:0051188;cofactor biosynthetic process;1.94156490314872e-07!GO:0051187;cofactor catabolic process;1.96380390556585e-07!GO:0005813;centrosome;2.09478215147917e-07!GO:0048475;coated membrane;2.20743296165822e-07!GO:0030117;membrane coat;2.20743296165822e-07!GO:0005667;transcription factor complex;2.55915629984426e-07!GO:0016881;acid-amino acid ligase activity;2.62033103565229e-07!GO:0009117;nucleotide metabolic process;2.97352317235216e-07!GO:0015078;hydrogen ion transmembrane transporter activity;3.2777887293728e-07!GO:0051246;regulation of protein metabolic process;4.46994122982124e-07!GO:0000775;chromosome, pericentric region;4.66221667861777e-07!GO:0007005;mitochondrion organization and biogenesis;4.88685291210178e-07!GO:0051329;interphase of mitotic cell cycle;5.01560828737586e-07!GO:0005815;microtubule organizing center;5.21459258470591e-07!GO:0006754;ATP biosynthetic process;5.41716892426653e-07!GO:0006753;nucleoside phosphate metabolic process;5.41716892426653e-07!GO:0016469;proton-transporting two-sector ATPase complex;8.44235753586317e-07!GO:0000245;spliceosome assembly;8.49929217407137e-07!GO:0016568;chromatin modification;8.88314884292285e-07!GO:0005768;endosome;9.03320686828465e-07!GO:0044431;Golgi apparatus part;1.00259877178844e-06!GO:0032446;protein modification by small protein conjugation;1.09558146852428e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.2107632363623e-06!GO:0007051;spindle organization and biogenesis;1.30529691721771e-06!GO:0016779;nucleotidyltransferase activity;1.31258407934439e-06!GO:0045259;proton-transporting ATP synthase complex;1.31258407934439e-06!GO:0016740;transferase activity;1.54897932593872e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.98803541406468e-06!GO:0016567;protein ubiquitination;2.02635453089812e-06!GO:0051325;interphase;2.10405424114125e-06!GO:0006613;cotranslational protein targeting to membrane;2.28365133122575e-06!GO:0043623;cellular protein complex assembly;2.29717215313446e-06!GO:0005525;GTP binding;2.33376243461852e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.35094578544613e-06!GO:0031324;negative regulation of cellular metabolic process;2.79905494739386e-06!GO:0050789;regulation of biological process;3.17324616677622e-06!GO:0006261;DNA-dependent DNA replication;3.58258628204939e-06!GO:0000075;cell cycle checkpoint;4.23014839719373e-06!GO:0043069;negative regulation of programmed cell death;4.23014839719373e-06!GO:0016023;cytoplasmic membrane-bound vesicle;4.39840105425882e-06!GO:0016787;hydrolase activity;4.4601656713816e-06!GO:0031988;membrane-bound vesicle;4.4601656713816e-06!GO:0006752;group transfer coenzyme metabolic process;4.9339045197263e-06!GO:0016563;transcription activator activity;5.0683361055446e-06!GO:0043067;regulation of programmed cell death;5.21664189381207e-06!GO:0000151;ubiquitin ligase complex;5.32901923284441e-06!GO:0051170;nuclear import;5.94424891259165e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.98710358940243e-06!GO:0009108;coenzyme biosynthetic process;6.55012593290903e-06!GO:0006916;anti-apoptosis;6.67388576413785e-06!GO:0003724;RNA helicase activity;6.97199324221221e-06!GO:0042981;regulation of apoptosis;7.44938252880693e-06!GO:0005762;mitochondrial large ribosomal subunit;7.90173708166084e-06!GO:0000315;organellar large ribosomal subunit;7.90173708166084e-06!GO:0043066;negative regulation of apoptosis;8.73454925606525e-06!GO:0016491;oxidoreductase activity;9.81328941700322e-06!GO:0000786;nucleosome;9.91497883123262e-06!GO:0031252;leading edge;1.07632865739078e-05!GO:0005657;replication fork;1.1088982601993e-05!GO:0005770;late endosome;1.11602178507191e-05!GO:0006606;protein import into nucleus;1.33398748105231e-05!GO:0007010;cytoskeleton organization and biogenesis;1.44625876970235e-05!GO:0004298;threonine endopeptidase activity;1.48519266716415e-05!GO:0008654;phospholipid biosynthetic process;1.55364417426832e-05!GO:0005798;Golgi-associated vesicle;1.59765672841724e-05!GO:0045786;negative regulation of progression through cell cycle;1.6806661366472e-05!GO:0003713;transcription coactivator activity;1.79860689038138e-05!GO:0032561;guanyl ribonucleotide binding;1.79976274488848e-05!GO:0019001;guanyl nucleotide binding;1.79976274488848e-05!GO:0009892;negative regulation of metabolic process;1.90047682413937e-05!GO:0003899;DNA-directed RNA polymerase activity;2.10772282325019e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.24788269709353e-05!GO:0015980;energy derivation by oxidation of organic compounds;2.39159052750568e-05!GO:0043021;ribonucleoprotein binding;2.53811375722286e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.53811375722286e-05!GO:0031982;vesicle;2.6361239626345e-05!GO:0000139;Golgi membrane;2.79340107239012e-05!GO:0031410;cytoplasmic vesicle;2.95193967015863e-05!GO:0008094;DNA-dependent ATPase activity;2.97280445587591e-05!GO:0045454;cell redox homeostasis;3.42129351767072e-05!GO:0030867;rough endoplasmic reticulum membrane;3.76040634990488e-05!GO:0000314;organellar small ribosomal subunit;3.85984461743875e-05!GO:0005763;mitochondrial small ribosomal subunit;3.85984461743875e-05!GO:0019843;rRNA binding;3.88292663469118e-05!GO:0016564;transcription repressor activity;3.89057960565248e-05!GO:0016363;nuclear matrix;3.95663294901003e-05!GO:0019222;regulation of metabolic process;4.46434020361277e-05!GO:0044440;endosomal part;4.95262371307852e-05!GO:0010008;endosome membrane;4.95262371307852e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;5.23232799585553e-05!GO:0005852;eukaryotic translation initiation factor 3 complex;5.80228291478347e-05!GO:0003714;transcription corepressor activity;6.60082802069745e-05!GO:0016126;sterol biosynthetic process;7.02566966134702e-05!GO:0006612;protein targeting to membrane;7.28418166696798e-05!GO:0051427;hormone receptor binding;7.38219936757561e-05!GO:0000079;regulation of cyclin-dependent protein kinase activity;8.60738761117101e-05!GO:0006302;double-strand break repair;9.29246146315619e-05!GO:0000776;kinetochore;9.72525224650607e-05!GO:0051789;response to protein stimulus;0.00010041896075972!GO:0006986;response to unfolded protein;0.00010041896075972!GO:0006793;phosphorus metabolic process;0.000101386606144882!GO:0006796;phosphate metabolic process;0.000101386606144882!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000102073873276111!GO:0005769;early endosome;0.000105259834871972!GO:0003690;double-stranded DNA binding;0.000107198513073381!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000123185018295833!GO:0016310;phosphorylation;0.00015142172506581!GO:0035257;nuclear hormone receptor binding;0.0001546861816527!GO:0031968;organelle outer membrane;0.000155631904922184!GO:0030133;transport vesicle;0.00017798172532056!GO:0005048;signal sequence binding;0.000179171950852713!GO:0008186;RNA-dependent ATPase activity;0.00019129250357926!GO:0016481;negative regulation of transcription;0.000194225165414448!GO:0006310;DNA recombination;0.000200683102376243!GO:0019867;outer membrane;0.000203430797981783!GO:0006091;generation of precursor metabolites and energy;0.000231014918798654!GO:0008361;regulation of cell size;0.000239785231979929!GO:0005885;Arp2/3 protein complex;0.000252355358868908!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000284060053985749!GO:0033116;ER-Golgi intermediate compartment membrane;0.000285108412961808!GO:0005791;rough endoplasmic reticulum;0.000288959347203542!GO:0030036;actin cytoskeleton organization and biogenesis;0.000308512637819546!GO:0042802;identical protein binding;0.000342720411183111!GO:0051168;nuclear export;0.000347387252002967!GO:0016049;cell growth;0.000357967051519461!GO:0006626;protein targeting to mitochondrion;0.000357967051519461!GO:0008250;oligosaccharyl transferase complex;0.000357967051519461!GO:0009165;nucleotide biosynthetic process;0.000358427078665968!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000368989589372151!GO:0030663;COPI coated vesicle membrane;0.000384621294903123!GO:0030126;COPI vesicle coat;0.000384621294903123!GO:0043681;protein import into mitochondrion;0.000414900555766623!GO:0003729;mRNA binding;0.000430091199460103!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000441115850449578!GO:0007093;mitotic cell cycle checkpoint;0.0004442550818736!GO:0007088;regulation of mitosis;0.000450206607525151!GO:0007052;mitotic spindle organization and biogenesis;0.000450206607525151!GO:0005874;microtubule;0.000460170818993552!GO:0031072;heat shock protein binding;0.000461814719031689!GO:0019899;enzyme binding;0.000461814719031689!GO:0004004;ATP-dependent RNA helicase activity;0.000507732724824796!GO:0004576;oligosaccharyl transferase activity;0.000509556884857492!GO:0003682;chromatin binding;0.000510905770859153!GO:0003684;damaged DNA binding;0.000533156712262823!GO:0044452;nucleolar part;0.000546997085217101!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000568923923895898!GO:0051252;regulation of RNA metabolic process;0.000582677108999421!GO:0006695;cholesterol biosynthetic process;0.000584747326408599!GO:0006383;transcription from RNA polymerase III promoter;0.000616340979346772!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00061691127921499!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000631230817967484!GO:0005905;coated pit;0.000635689423737689!GO:0051052;regulation of DNA metabolic process;0.000654140623851205!GO:0006891;intra-Golgi vesicle-mediated transport;0.000674159486357751!GO:0007059;chromosome segregation;0.000675413291127669!GO:0001558;regulation of cell growth;0.000677867381813228!GO:0018196;peptidyl-asparagine modification;0.0006970843536361!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0006970843536361!GO:0046474;glycerophospholipid biosynthetic process;0.000723031877278064!GO:0048500;signal recognition particle;0.000745052757144774!GO:0000059;protein import into nucleus, docking;0.000751096930283261!GO:0051920;peroxiredoxin activity;0.00077941833872011!GO:0005741;mitochondrial outer membrane;0.000780737142668162!GO:0006414;translational elongation;0.000894864449709144!GO:0005773;vacuole;0.000950119404256247!GO:0030137;COPI-coated vesicle;0.00097013969896849!GO:0000082;G1/S transition of mitotic cell cycle;0.000986714588119892!GO:0003678;DNA helicase activity;0.00105495623461639!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00115769869947272!GO:0008047;enzyme activator activity;0.00119300571159251!GO:0008180;signalosome;0.00126271084856925!GO:0007050;cell cycle arrest;0.00126305070945882!GO:0006352;transcription initiation;0.00130733132703561!GO:0008312;7S RNA binding;0.00133194352960365!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00134156617425121!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00134156617425121!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00134156617425121!GO:0051087;chaperone binding;0.00138634739305857!GO:0008033;tRNA processing;0.00140894102564643!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00144223609802463!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00156868358419437!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00156973699492865!GO:0048471;perinuclear region of cytoplasm;0.00168458028857334!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00175767959535058!GO:0045047;protein targeting to ER;0.00175767959535058!GO:0015631;tubulin binding;0.00181781745124356!GO:0030029;actin filament-based process;0.00193574032067238!GO:0005684;U2-dependent spliceosome;0.001964031145433!GO:0016251;general RNA polymerase II transcription factor activity;0.00209875271502147!GO:0006839;mitochondrial transport;0.00209875271502147!GO:0006402;mRNA catabolic process;0.00211520457647273!GO:0043488;regulation of mRNA stability;0.00220801069114577!GO:0043487;regulation of RNA stability;0.00220801069114577!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00222670129576467!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00230661422658426!GO:0030027;lamellipodium;0.0023827798621037!GO:0005876;spindle microtubule;0.00238718535067974!GO:0008168;methyltransferase activity;0.00238972524630144!GO:0030176;integral to endoplasmic reticulum membrane;0.00238972524630144!GO:0016741;transferase activity, transferring one-carbon groups;0.00239538627718124!GO:0065009;regulation of a molecular function;0.0024716570475369!GO:0030880;RNA polymerase complex;0.0024716570475369!GO:0043284;biopolymer biosynthetic process;0.00255159929253659!GO:0048522;positive regulation of cellular process;0.00255159929253659!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00267009241102878!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00267009241102878!GO:0007006;mitochondrial membrane organization and biogenesis;0.00285077178307222!GO:0000323;lytic vacuole;0.00285081781852762!GO:0005764;lysosome;0.00285081781852762!GO:0030521;androgen receptor signaling pathway;0.00291563852236571!GO:0030134;ER to Golgi transport vesicle;0.00312887693907102!GO:0008610;lipid biosynthetic process;0.00333784357453795!GO:0035258;steroid hormone receptor binding;0.00333784357453795!GO:0009112;nucleobase metabolic process;0.00336473692149262!GO:0003711;transcription elongation regulator activity;0.00336473692149262!GO:0065007;biological regulation;0.00339965666662878!GO:0046489;phosphoinositide biosynthetic process;0.00340679532557512!GO:0031323;regulation of cellular metabolic process;0.0034797863290255!GO:0000910;cytokinesis;0.00354254310743821!GO:0046467;membrane lipid biosynthetic process;0.00392683875171137!GO:0051287;NAD binding;0.00428139022949119!GO:0007017;microtubule-based process;0.00430202368070302!GO:0007243;protein kinase cascade;0.00443735429723783!GO:0006401;RNA catabolic process;0.00455435180315177!GO:0031124;mRNA 3'-end processing;0.0045828885213689!GO:0030658;transport vesicle membrane;0.00461584704286774!GO:0030127;COPII vesicle coat;0.00461584704286774!GO:0012507;ER to Golgi transport vesicle membrane;0.00461584704286774!GO:0046483;heterocycle metabolic process;0.00474749319881853!GO:0045045;secretory pathway;0.00480115037737867!GO:0006950;response to stress;0.00480115037737867!GO:0005096;GTPase activator activity;0.00481320168600323!GO:0030659;cytoplasmic vesicle membrane;0.00502991525718486!GO:0008139;nuclear localization sequence binding;0.00504162116631997!GO:0004527;exonuclease activity;0.00516267409416161!GO:0006289;nucleotide-excision repair;0.00519541716772714!GO:0008092;cytoskeletal protein binding;0.00539250410406151!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00539250410406151!GO:0000428;DNA-directed RNA polymerase complex;0.00539250410406151!GO:0048487;beta-tubulin binding;0.00576657487020987!GO:0015992;proton transport;0.00581898105976885!GO:0006275;regulation of DNA replication;0.00587418088309335!GO:0000049;tRNA binding;0.0059289576619825!GO:0032984;macromolecular complex disassembly;0.00605406002985933!GO:0017166;vinculin binding;0.00611730845280887!GO:0005637;nuclear inner membrane;0.00620277006369136!GO:0008022;protein C-terminus binding;0.00630672124171604!GO:0000922;spindle pole;0.0064825311446802!GO:0001726;ruffle;0.00655429552703143!GO:0016272;prefoldin complex;0.00655429552703143!GO:0005869;dynactin complex;0.0067078684332225!GO:0030118;clathrin coat;0.006727381814684!GO:0006818;hydrogen transport;0.006727381814684!GO:0006220;pyrimidine nucleotide metabolic process;0.006727381814684!GO:0000339;RNA cap binding;0.00680522008459909!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0068658748131552!GO:0015002;heme-copper terminal oxidase activity;0.0068658748131552!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0068658748131552!GO:0004129;cytochrome-c oxidase activity;0.0068658748131552!GO:0045892;negative regulation of transcription, DNA-dependent;0.00688363289627874!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.007194232519019!GO:0015399;primary active transmembrane transporter activity;0.007194232519019!GO:0044262;cellular carbohydrate metabolic process;0.00762378981416763!GO:0006350;transcription;0.00764664588585995!GO:0006595;polyamine metabolic process;0.00767819854823796!GO:0043022;ribosome binding;0.00819864283457559!GO:0003746;translation elongation factor activity;0.008198839492653!GO:0006520;amino acid metabolic process;0.00865334926817583!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00867085359242102!GO:0043624;cellular protein complex disassembly;0.00867085359242102!GO:0032508;DNA duplex unwinding;0.00867085359242102!GO:0032392;DNA geometric change;0.00867085359242102!GO:0051128;regulation of cellular component organization and biogenesis;0.00894630219976024!GO:0005669;transcription factor TFIID complex;0.00922247238296515!GO:0005862;muscle thin filament tropomyosin;0.00925184676856812!GO:0033673;negative regulation of kinase activity;0.00930847977838571!GO:0006469;negative regulation of protein kinase activity;0.00930847977838571!GO:0004003;ATP-dependent DNA helicase activity;0.00938032342100341!GO:0007021;tubulin folding;0.00939955570786728!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00984570380159737!GO:0005832;chaperonin-containing T-complex;0.00985859440996406!GO:0009116;nucleoside metabolic process;0.0100499489287463!GO:0030660;Golgi-associated vesicle membrane;0.0100849504381222!GO:0030132;clathrin coat of coated pit;0.0107317109801312!GO:0051539;4 iron, 4 sulfur cluster binding;0.0107317109801312!GO:0044433;cytoplasmic vesicle part;0.0108114361650568!GO:0006144;purine base metabolic process;0.0113399732486626!GO:0031901;early endosome membrane;0.0113475481239826!GO:0050662;coenzyme binding;0.0116010477515952!GO:0016197;endosome transport;0.0116097644255201!GO:0043241;protein complex disassembly;0.0118623859086963!GO:0006405;RNA export from nucleus;0.0118650745400649!GO:0006268;DNA unwinding during replication;0.0118983980233737!GO:0031902;late endosome membrane;0.0119108648068936!GO:0004177;aminopeptidase activity;0.0119192570651322!GO:0016408;C-acyltransferase activity;0.0121386908144883!GO:0031123;RNA 3'-end processing;0.012406339839163!GO:0051348;negative regulation of transferase activity;0.0124227234373007!GO:0019752;carboxylic acid metabolic process;0.0127552682578572!GO:0032200;telomere organization and biogenesis;0.0128903976624783!GO:0000723;telomere maintenance;0.0128903976624783!GO:0031970;organelle envelope lumen;0.0128922187668651!GO:0006082;organic acid metabolic process;0.0131394709609262!GO:0007264;small GTPase mediated signal transduction;0.0131446198212053!GO:0043596;nuclear replication fork;0.0134004044993373!GO:0003702;RNA polymerase II transcription factor activity;0.0135404357436994!GO:0000209;protein polyubiquitination;0.0139667405562892!GO:0016584;nucleosome positioning;0.0140163982422794!GO:0006740;NADPH regeneration;0.0140163982422794!GO:0006098;pentose-phosphate shunt;0.0140163982422794!GO:0006611;protein export from nucleus;0.0144025958015821!GO:0004518;nuclease activity;0.0147356182837311!GO:0000228;nuclear chromosome;0.0147699992894188!GO:0006509;membrane protein ectodomain proteolysis;0.0148043188870568!GO:0033619;membrane protein proteolysis;0.0148043188870568!GO:0006338;chromatin remodeling;0.0148686826463358!GO:0050681;androgen receptor binding;0.0149888408568353!GO:0005758;mitochondrial intermembrane space;0.01563126452986!GO:0022890;inorganic cation transmembrane transporter activity;0.0159747968459365!GO:0006378;mRNA polyadenylation;0.0162093216570549!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0163966647129774!GO:0009303;rRNA transcription;0.017016277832653!GO:0004674;protein serine/threonine kinase activity;0.0175372476382461!GO:0006497;protein amino acid lipidation;0.0177789799412006!GO:0031625;ubiquitin protein ligase binding;0.0181550515529164!GO:0030496;midbody;0.0189439851060746!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0189439851060746!GO:0012506;vesicle membrane;0.0193584521870822!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0194642932890132!GO:0006376;mRNA splice site selection;0.019484935011399!GO:0000389;nuclear mRNA 3'-splice site recognition;0.019484935011399!GO:0000178;exosome (RNase complex);0.0197539353239328!GO:0030119;AP-type membrane coat adaptor complex;0.0197639156475793!GO:0016407;acetyltransferase activity;0.020441610445562!GO:0030518;steroid hormone receptor signaling pathway;0.020457682783876!GO:0015036;disulfide oxidoreductase activity;0.0210713459827379!GO:0008632;apoptotic program;0.0210765347032049!GO:0042770;DNA damage response, signal transduction;0.0212243037436842!GO:0006284;base-excision repair;0.0216941734789098!GO:0009967;positive regulation of signal transduction;0.0217252349512149!GO:0031577;spindle checkpoint;0.0217252349512149!GO:0030145;manganese ion binding;0.0219048101850696!GO:0007034;vacuolar transport;0.0221928910162926!GO:0006541;glutamine metabolic process;0.0222550671322226!GO:0040008;regulation of growth;0.0223289321751156!GO:0043130;ubiquitin binding;0.0223397779582094!GO:0032182;small conjugating protein binding;0.0223397779582094!GO:0008097;5S rRNA binding;0.0223999153112162!GO:0030032;lamellipodium biogenesis;0.0224712866859566!GO:0045893;positive regulation of transcription, DNA-dependent;0.0227903285379601!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0228134878742825!GO:0000096;sulfur amino acid metabolic process;0.0230697228798825!GO:0051540;metal cluster binding;0.0231633347433839!GO:0051536;iron-sulfur cluster binding;0.0231633347433839!GO:0000792;heterochromatin;0.0232580022289523!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0232643524690588!GO:0010468;regulation of gene expression;0.023383440437467!GO:0042393;histone binding;0.0234428123408838!GO:0031529;ruffle organization and biogenesis;0.0236435341183532!GO:0000725;recombinational repair;0.0238024003026841!GO:0000724;double-strand break repair via homologous recombination;0.0238024003026841!GO:0040029;regulation of gene expression, epigenetic;0.0248997301480403!GO:0006354;RNA elongation;0.0248997301480403!GO:0007569;cell aging;0.0250141125273461!GO:0000726;non-recombinational repair;0.0251925452418461!GO:0007004;telomere maintenance via telomerase;0.0262107836983896!GO:0051101;regulation of DNA binding;0.0264733270399447!GO:0006650;glycerophospholipid metabolic process;0.0267713601432039!GO:0016044;membrane organization and biogenesis;0.0267768427695346!GO:0031570;DNA integrity checkpoint;0.0272371436717349!GO:0031371;ubiquitin conjugating enzyme complex;0.0273014076879457!GO:0022408;negative regulation of cell-cell adhesion;0.0275504928162656!GO:0000781;chromosome, telomeric region;0.0278552157236032!GO:0050790;regulation of catalytic activity;0.0278759036241725!GO:0022406;membrane docking;0.0279113113356694!GO:0048278;vesicle docking;0.0279113113356694!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0280022314513801!GO:0008538;proteasome activator activity;0.0284779989938478!GO:0003756;protein disulfide isomerase activity;0.0286351330050833!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0286351330050833!GO:0009451;RNA modification;0.0287808067245161!GO:0035267;NuA4 histone acetyltransferase complex;0.029145717629076!GO:0005801;cis-Golgi network;0.0295210215651071!GO:0008320;protein transmembrane transporter activity;0.0295439515667127!GO:0001952;regulation of cell-matrix adhesion;0.0297484015268164!GO:0006417;regulation of translation;0.0303395095627503!GO:0006506;GPI anchor biosynthetic process;0.0306713422949413!GO:0004448;isocitrate dehydrogenase activity;0.0307724591810021!GO:0047485;protein N-terminus binding;0.0309162711314499!GO:0000152;nuclear ubiquitin ligase complex;0.0310273788574375!GO:0006007;glucose catabolic process;0.0310873759987069!GO:0000086;G2/M transition of mitotic cell cycle;0.0311429089052208!GO:0006892;post-Golgi vesicle-mediated transport;0.0312706249783875!GO:0042158;lipoprotein biosynthetic process;0.0315182247744515!GO:0006778;porphyrin metabolic process;0.0317050100931928!GO:0033013;tetrapyrrole metabolic process;0.0317050100931928!GO:0051098;regulation of binding;0.0321586046590915!GO:0022884;macromolecule transmembrane transporter activity;0.032293377888007!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.032293377888007!GO:0045792;negative regulation of cell size;0.0322962347814081!GO:0032940;secretion by cell;0.0323178202702282!GO:0030508;thiol-disulfide exchange intermediate activity;0.0324210361032108!GO:0005784;translocon complex;0.0329263950590234!GO:0030131;clathrin adaptor complex;0.0331348797767504!GO:0005586;collagen type III;0.0331348797767504!GO:0032259;methylation;0.0333868364627887!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0335302952644716!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0340434420538037!GO:0009124;nucleoside monophosphate biosynthetic process;0.0355457163462044!GO:0009123;nucleoside monophosphate metabolic process;0.0355457163462044!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0355457163462044!GO:0008408;3'-5' exonuclease activity;0.0361103148822357!GO:0043414;biopolymer methylation;0.0363019624704167!GO:0007346;regulation of progression through mitotic cell cycle;0.0373683144129351!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0375868225759741!GO:0043189;H4/H2A histone acetyltransferase complex;0.0379509643288726!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0381896788430995!GO:0000070;mitotic sister chromatid segregation;0.038222359184148!GO:0000819;sister chromatid segregation;0.0382402274446686!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0384691294527914!GO:0022411;cellular component disassembly;0.0393027256933193!GO:0008243;plasminogen activator activity;0.0393336937645522!GO:0030308;negative regulation of cell growth;0.0393935568776084!GO:0006505;GPI anchor metabolic process;0.0394369635175359!GO:0033559;unsaturated fatty acid metabolic process;0.0395952682558985!GO:0006636;unsaturated fatty acid biosynthetic process;0.0395952682558985!GO:0004532;exoribonuclease activity;0.0397804443986288!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0397804443986288!GO:0022415;viral reproductive process;0.0399036088869166!GO:0003923;GPI-anchor transamidase activity;0.0399036088869166!GO:0016255;attachment of GPI anchor to protein;0.0399036088869166!GO:0042765;GPI-anchor transamidase complex;0.0399036088869166!GO:0006739;NADP metabolic process;0.0399098227017738!GO:0016125;sterol metabolic process;0.0399967806536705!GO:0006904;vesicle docking during exocytosis;0.0400035785208106!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0402395215131013!GO:0045941;positive regulation of transcription;0.0402676989087304!GO:0005092;GDP-dissociation inhibitor activity;0.0407360690839791!GO:0009119;ribonucleoside metabolic process;0.0410932995504279!GO:0043601;nuclear replisome;0.041458571244411!GO:0030894;replisome;0.041458571244411!GO:0030041;actin filament polymerization;0.0421911832661145!GO:0007040;lysosome organization and biogenesis;0.0424534493332446!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.042479664827762!GO:0046128;purine ribonucleoside metabolic process;0.0438811029535618!GO:0042278;purine nucleoside metabolic process;0.0438811029535618!GO:0045936;negative regulation of phosphate metabolic process;0.0439356613981936!GO:0030384;phosphoinositide metabolic process;0.0441648895186575!GO:0008299;isoprenoid biosynthetic process;0.0446840985666966!GO:0017134;fibroblast growth factor binding;0.0446840985666966!GO:0030833;regulation of actin filament polymerization;0.0446960295756567!GO:0006266;DNA ligation;0.0451599888370135!GO:0043433;negative regulation of transcription factor activity;0.0451673415466843!GO:0006400;tRNA modification;0.0454982642471479!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0459749535245787!GO:0033043;regulation of organelle organization and biogenesis;0.0459749535245787!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0461274655801747!GO:0031418;L-ascorbic acid binding;0.0461274655801747!GO:0030125;clathrin vesicle coat;0.0463173527584062!GO:0030665;clathrin coated vesicle membrane;0.0463173527584062!GO:0019206;nucleoside kinase activity;0.0463173527584062!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0463174405945764!GO:0007162;negative regulation of cell adhesion;0.0474105621988152!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0476880393408532!GO:0008234;cysteine-type peptidase activity;0.0477136012904781!GO:0005680;anaphase-promoting complex;0.0477661304913556!GO:0005938;cell cortex;0.0477761809891924!GO:0006779;porphyrin biosynthetic process;0.0483231049708962!GO:0033014;tetrapyrrole biosynthetic process;0.0483231049708962!GO:0043492;ATPase activity, coupled to movement of substances;0.0483654708687603!GO:0042026;protein refolding;0.0483654708687603!GO:0000077;DNA damage checkpoint;0.0483654708687603!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0489471679688944!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0490905554478056!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0490905554478056!GO:0030911;TPR domain binding;0.0491969290052976!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.049241188106198!GO:0007033;vacuole organization and biogenesis;0.049917429327699 | |||
|sample_id=11541 | |sample_id=11541 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=umbilical vein | |sample_tissue=umbilical vein | ||
|top_motifs=HSF1,2:1.30860254873;EN1,2:1.2067720461;TAL1_TCF{3,4,12}:1.11826289956;NFY{A,B,C}:1.01059123511;NR3C1:0.985497296507;PBX1:0.96904795767;PAX8:0.900292627726;CDC5L:0.88600477005;HOX{A5,B5}:0.879854834419;TFDP1:0.87938027578;SRF:0.850969631454;GFI1:0.840203646827;E2F1..5:0.796821700217;MYB:0.776080184057;TEAD1:0.738864886524;GFI1B:0.734737722466;LHX3,4:0.719543962124;ATF6:0.718099930499;NKX3-1:0.612025133898;ZNF384:0.597107642408;FOXD3:0.590251446429;SOX17:0.5832303129;FOX{I1,J2}:0.563663612517;TBP:0.511663723437;DBP:0.49610621798;KLF4:0.486700206681;PPARG:0.480104779719;ELK1,4_GABP{A,B1}:0.474752412598;HOXA9_MEIS1:0.469724957735;POU1F1:0.466902783462;EVI1:0.463473067785;ADNP_IRX_SIX_ZHX:0.461128402434;LEF1_TCF7_TCF7L1,2:0.455489796524;IKZF1:0.436407938784;MAFB:0.421572405573;NR1H4:0.413385270177;NANOG:0.388147827616;NRF1:0.378016422853;NKX6-1,2:0.36678375231;MYBL2:0.352544595391;NFATC1..3:0.351814927245;GATA4:0.350646399144;TP53:0.34180034562;RXR{A,B,G}:0.339334589509;POU5F1:0.338874354995;ZNF143:0.32116858511;YY1:0.321021845435;XBP1:0.316266579227;GLI1..3:0.31470043903;POU3F1..4:0.312246267271;MZF1:0.307136614692;GZF1:0.30427585846;NR6A1:0.301438018811;PAX4:0.297964668168;GTF2A1,2:0.288125285246;NKX2-2,8:0.285676996419;AHR_ARNT_ARNT2:0.28279662821;TLX1..3_NFIC{dimer}:0.27540874655;TEF:0.266014047606;UFEwm:0.262105367517;TBX4,5:0.262013184317;STAT1,3:0.260471910208;HMGA1,2:0.252733228024;T:0.249192423581;ONECUT1,2:0.23188441188;PRDM1:0.200507789892;PAX5:0.197398814877;SOX2:0.196483129102;EBF1:0.192189691716;CDX1,2,4:0.187280588703;ELF1,2,4:0.166115559593;TFAP4:0.161405153339;POU2F1..3:0.15180174699;ZIC1..3:0.151281917129;HNF4A_NR2F1,2:0.142502130807;FOSL2:0.142311967862;BPTF:0.132773899902;ZNF148:0.131492949648;PAX1,9:0.127670947901;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.106993836319;NFE2L2:0.103384986661;SPZ1:0.0974263310731;SOX{8,9,10}:0.097094569534;BACH2:0.0933027158646;PRRX1,2:0.0914480759754;HAND1,2:0.088326735238;GTF2I:0.082693059396;NKX2-3_NKX2-5:0.0795353035946;ZNF238:0.0781198462396;FOS_FOS{B,L1}_JUN{B,D}:0.0714015703853;ALX4:0.0661594501643;FOXQ1:0.0573928251649;HNF1A:0.0554216973763;NKX2-1,4:0.0459760877691;PITX1..3:0.0431420330444;PDX1:0.0357842953109;SOX5:0.0285546346928;NKX3-2:0.0264284717165;CRX:0.0253374082189;HOX{A4,D4}:0.0223955727776;RFX1:0.0207264720667;RUNX1..3:0.00308098482189;TLX2:-0.0108943539325;HLF:-0.0191908425291;PATZ1:-0.0270512099311;JUN:-0.0281226109184;DMAP1_NCOR{1,2}_SMARC:-0.0469789816973;NFE2:-0.0498526445673;MEF2{A,B,C,D}:-0.0593192134239;TOPORS:-0.0641979123516;MAZ:-0.0644150458454;ALX1:-0.0727821147747;SMAD1..7,9:-0.0801620651311;NFIX:-0.0879587269977;RREB1:-0.0905588473578;CREB1:-0.101066042393;ESR1:-0.110579994432;FOXP3:-0.1292977758;AIRE:-0.131134798716;CEBPA,B_DDIT3:-0.134198042767;GCM1,2:-0.13476089949;NFE2L1:-0.143634906157;OCT4_SOX2{dimer}:-0.152009912929;ZNF423:-0.166099860341;TFCP2:-0.166335815649;NHLH1,2:-0.174434127139;ZBTB6:-0.177075509185;ATF5_CREB3:-0.183563106056;POU6F1:-0.189406061437;HBP1_HMGB_SSRP1_UBTF:-0.191696282704;ARID5B:-0.196996411324;HIF1A:-0.201342279474;CUX2:-0.204409511908;ESRRA:-0.206570194348;FOXA2:-0.214293824224;NFKB1_REL_RELA:-0.228436371635;MTE{core}:-0.228534892006;SP1:-0.246716955291;FOXN1:-0.252853874077;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.26042463268;FOXL1:-0.264133441254;ZFP161:-0.264846089598;ZBTB16:-0.284429047481;NANOG{mouse}:-0.291133183952;PAX2:-0.292071918633;IRF7:-0.293821283867;GATA6:-0.299939468012;NR5A1,2:-0.311973210385;AR:-0.316543069416;STAT2,4,6:-0.322399594891;HOX{A6,A7,B6,B7}:-0.324239667022;XCPE1{core}:-0.353688038929;SREBF1,2:-0.355780076868;RFX2..5_RFXANK_RFXAP:-0.359452395436;ATF4:-0.368290891568;PAX6:-0.368611767934;TFAP2{A,C}:-0.370133764338;NFIL3:-0.375351035668;SPI1:-0.383833338824;RXRA_VDR{dimer}:-0.384967632873;REST:-0.385374241075;MED-1{core}:-0.401012980509;HES1:-0.402231741428;PAX3,7:-0.402843811292;ETS1,2:-0.403465343288;FOXM1:-0.412275794998;MTF1:-0.41757186691;SPIB:-0.444904445497;TGIF1:-0.449582177406;ATF2:-0.454597500431;HIC1:-0.463202137067;IRF1,2:-0.469462831926;bHLH_family:-0.477424733954;FOXP1:-0.478394368057;MYFfamily:-0.494997129168;STAT5{A,B}:-0.56307375821;HMX1:-0.571285817223;FOXO1,3,4:-0.575001244773;SNAI1..3:-0.577011300177;BREu{core}:-0.590481568938;FOX{D1,D2}:-0.627193633399;FOX{F1,F2,J1}:-0.639251619154;RORA:-0.642873294547;TFAP2B:-0.670025298081;EGR1..3:-0.680436405254;IKZF2:-0.743722834938;LMO2:-0.770497231757;ZEB1:-0.771758407129;VSX1,2:-0.809384445502;EP300:-0.829234792496;RBPJ:-0.990244646403;MYOD1:-1.44005021045 | |top_motifs=HSF1,2:1.30860254873;EN1,2:1.2067720461;TAL1_TCF{3,4,12}:1.11826289956;NFY{A,B,C}:1.01059123511;NR3C1:0.985497296507;PBX1:0.96904795767;PAX8:0.900292627726;CDC5L:0.88600477005;HOX{A5,B5}:0.879854834419;TFDP1:0.87938027578;SRF:0.850969631454;GFI1:0.840203646827;E2F1..5:0.796821700217;MYB:0.776080184057;TEAD1:0.738864886524;GFI1B:0.734737722466;LHX3,4:0.719543962124;ATF6:0.718099930499;NKX3-1:0.612025133898;ZNF384:0.597107642408;FOXD3:0.590251446429;SOX17:0.5832303129;FOX{I1,J2}:0.563663612517;TBP:0.511663723437;DBP:0.49610621798;KLF4:0.486700206681;PPARG:0.480104779719;ELK1,4_GABP{A,B1}:0.474752412598;HOXA9_MEIS1:0.469724957735;POU1F1:0.466902783462;EVI1:0.463473067785;ADNP_IRX_SIX_ZHX:0.461128402434;LEF1_TCF7_TCF7L1,2:0.455489796524;IKZF1:0.436407938784;MAFB:0.421572405573;NR1H4:0.413385270177;NANOG:0.388147827616;NRF1:0.378016422853;NKX6-1,2:0.36678375231;MYBL2:0.352544595391;NFATC1..3:0.351814927245;GATA4:0.350646399144;TP53:0.34180034562;RXR{A,B,G}:0.339334589509;POU5F1:0.338874354995;ZNF143:0.32116858511;YY1:0.321021845435;XBP1:0.316266579227;GLI1..3:0.31470043903;POU3F1..4:0.312246267271;MZF1:0.307136614692;GZF1:0.30427585846;NR6A1:0.301438018811;PAX4:0.297964668168;GTF2A1,2:0.288125285246;NKX2-2,8:0.285676996419;AHR_ARNT_ARNT2:0.28279662821;TLX1..3_NFIC{dimer}:0.27540874655;TEF:0.266014047606;UFEwm:0.262105367517;TBX4,5:0.262013184317;STAT1,3:0.260471910208;HMGA1,2:0.252733228024;T:0.249192423581;ONECUT1,2:0.23188441188;PRDM1:0.200507789892;PAX5:0.197398814877;SOX2:0.196483129102;EBF1:0.192189691716;CDX1,2,4:0.187280588703;ELF1,2,4:0.166115559593;TFAP4:0.161405153339;POU2F1..3:0.15180174699;ZIC1..3:0.151281917129;HNF4A_NR2F1,2:0.142502130807;FOSL2:0.142311967862;BPTF:0.132773899902;ZNF148:0.131492949648;PAX1,9:0.127670947901;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.106993836319;NFE2L2:0.103384986661;SPZ1:0.0974263310731;SOX{8,9,10}:0.097094569534;BACH2:0.0933027158646;PRRX1,2:0.0914480759754;HAND1,2:0.088326735238;GTF2I:0.082693059396;NKX2-3_NKX2-5:0.0795353035946;ZNF238:0.0781198462396;FOS_FOS{B,L1}_JUN{B,D}:0.0714015703853;ALX4:0.0661594501643;FOXQ1:0.0573928251649;HNF1A:0.0554216973763;NKX2-1,4:0.0459760877691;PITX1..3:0.0431420330444;PDX1:0.0357842953109;SOX5:0.0285546346928;NKX3-2:0.0264284717165;CRX:0.0253374082189;HOX{A4,D4}:0.0223955727776;RFX1:0.0207264720667;RUNX1..3:0.00308098482189;TLX2:-0.0108943539325;HLF:-0.0191908425291;PATZ1:-0.0270512099311;JUN:-0.0281226109184;DMAP1_NCOR{1,2}_SMARC:-0.0469789816973;NFE2:-0.0498526445673;MEF2{A,B,C,D}:-0.0593192134239;TOPORS:-0.0641979123516;MAZ:-0.0644150458454;ALX1:-0.0727821147747;SMAD1..7,9:-0.0801620651311;NFIX:-0.0879587269977;RREB1:-0.0905588473578;CREB1:-0.101066042393;ESR1:-0.110579994432;FOXP3:-0.1292977758;AIRE:-0.131134798716;CEBPA,B_DDIT3:-0.134198042767;GCM1,2:-0.13476089949;NFE2L1:-0.143634906157;OCT4_SOX2{dimer}:-0.152009912929;ZNF423:-0.166099860341;TFCP2:-0.166335815649;NHLH1,2:-0.174434127139;ZBTB6:-0.177075509185;ATF5_CREB3:-0.183563106056;POU6F1:-0.189406061437;HBP1_HMGB_SSRP1_UBTF:-0.191696282704;ARID5B:-0.196996411324;HIF1A:-0.201342279474;CUX2:-0.204409511908;ESRRA:-0.206570194348;FOXA2:-0.214293824224;NFKB1_REL_RELA:-0.228436371635;MTE{core}:-0.228534892006;SP1:-0.246716955291;FOXN1:-0.252853874077;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.26042463268;FOXL1:-0.264133441254;ZFP161:-0.264846089598;ZBTB16:-0.284429047481;NANOG{mouse}:-0.291133183952;PAX2:-0.292071918633;IRF7:-0.293821283867;GATA6:-0.299939468012;NR5A1,2:-0.311973210385;AR:-0.316543069416;STAT2,4,6:-0.322399594891;HOX{A6,A7,B6,B7}:-0.324239667022;XCPE1{core}:-0.353688038929;SREBF1,2:-0.355780076868;RFX2..5_RFXANK_RFXAP:-0.359452395436;ATF4:-0.368290891568;PAX6:-0.368611767934;TFAP2{A,C}:-0.370133764338;NFIL3:-0.375351035668;SPI1:-0.383833338824;RXRA_VDR{dimer}:-0.384967632873;REST:-0.385374241075;MED-1{core}:-0.401012980509;HES1:-0.402231741428;PAX3,7:-0.402843811292;ETS1,2:-0.403465343288;FOXM1:-0.412275794998;MTF1:-0.41757186691;SPIB:-0.444904445497;TGIF1:-0.449582177406;ATF2:-0.454597500431;HIC1:-0.463202137067;IRF1,2:-0.469462831926;bHLH_family:-0.477424733954;FOXP1:-0.478394368057;MYFfamily:-0.494997129168;STAT5{A,B}:-0.56307375821;HMX1:-0.571285817223;FOXO1,3,4:-0.575001244773;SNAI1..3:-0.577011300177;BREu{core}:-0.590481568938;FOX{D1,D2}:-0.627193633399;FOX{F1,F2,J1}:-0.639251619154;RORA:-0.642873294547;TFAP2B:-0.670025298081;EGR1..3:-0.680436405254;IKZF2:-0.743722834938;LMO2:-0.770497231757;ZEB1:-0.771758407129;VSX1,2:-0.809384445502;EP300:-0.829234792496;RBPJ:-0.990244646403;MYOD1:-1.44005021045 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11541-120B2;search_select_hide=table117:FF:11541-120B2 | |||
}} | }} | ||
Latest revision as of 18:07, 4 June 2020
| Name: | Smooth Muscle Cells - Umbilical Vein, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12597 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12597
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12597
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.984 |
| 10 | 10 | 0.52 |
| 100 | 100 | 0.597 |
| 101 | 101 | 0.665 |
| 102 | 102 | 0.0834 |
| 103 | 103 | 0.997 |
| 104 | 104 | 0.618 |
| 105 | 105 | 0.748 |
| 106 | 106 | 0.0045 |
| 107 | 107 | 0.757 |
| 108 | 108 | 0.41 |
| 109 | 109 | 0.784 |
| 11 | 11 | 0.938 |
| 110 | 110 | 0.223 |
| 111 | 111 | 0.485 |
| 112 | 112 | 0.0388 |
| 113 | 113 | 0.189 |
| 114 | 114 | 0.316 |
| 115 | 115 | 0.342 |
| 116 | 116 | 0.373 |
| 117 | 117 | 0.49 |
| 118 | 118 | 0.665 |
| 119 | 119 | 0.152 |
| 12 | 12 | 0.468 |
| 120 | 120 | 0.194 |
| 121 | 121 | 0.641 |
| 122 | 122 | 0.0443 |
| 123 | 123 | 0.00107 |
| 124 | 124 | 0.929 |
| 125 | 125 | 0.756 |
| 126 | 126 | 0.808 |
| 127 | 127 | 0.936 |
| 128 | 128 | 0.423 |
| 129 | 129 | 0.228 |
| 13 | 13 | 0.126 |
| 130 | 130 | 0.026 |
| 131 | 131 | 0.511 |
| 132 | 132 | 0.839 |
| 133 | 133 | 0.646 |
| 134 | 134 | 0.746 |
| 135 | 135 | 0.404 |
| 136 | 136 | 0.704 |
| 137 | 137 | 0.0833 |
| 138 | 138 | 0.0596 |
| 139 | 139 | 1.57057e-4 |
| 14 | 14 | 0.315 |
| 140 | 140 | 0.883 |
| 141 | 141 | 0.2 |
| 142 | 142 | 0.677 |
| 143 | 143 | 0.773 |
| 144 | 144 | 0.834 |
| 145 | 145 | 0.709 |
| 146 | 146 | 0.95 |
| 147 | 147 | 0.34 |
| 148 | 148 | 0.961 |
| 149 | 149 | 0.761 |
| 15 | 15 | 0.353 |
| 150 | 150 | 0.824 |
| 151 | 151 | 0.529 |
| 152 | 152 | 0.513 |
| 153 | 153 | 0.538 |
| 154 | 154 | 0.904 |
| 155 | 155 | 0.0386 |
| 156 | 156 | 0.333 |
| 157 | 157 | 0.125 |
| 158 | 158 | 0.218 |
| 159 | 159 | 0.369 |
| 16 | 16 | 0.536 |
| 160 | 160 | 0.886 |
| 161 | 161 | 0.483 |
| 162 | 162 | 0.626 |
| 163 | 163 | 0.448 |
| 164 | 164 | 0.562 |
| 165 | 165 | 0.81 |
| 166 | 166 | 0.0548 |
| 167 | 167 | 0.915 |
| 168 | 168 | 0.529 |
| 169 | 169 | 0.693 |
| 17 | 17 | 0.982 |
| 18 | 18 | 0.487 |
| 19 | 19 | 0.418 |
| 2 | 2 | 0.478 |
| 20 | 20 | 0.943 |
| 21 | 21 | 0.295 |
| 22 | 22 | 0.974 |
| 23 | 23 | 0.0651 |
| 24 | 24 | 0.564 |
| 25 | 25 | 0.252 |
| 26 | 26 | 0.342 |
| 27 | 27 | 0.56 |
| 28 | 28 | 0.779 |
| 29 | 29 | 0.628 |
| 3 | 3 | 0.616 |
| 30 | 30 | 0.543 |
| 31 | 31 | 0.641 |
| 32 | 32 | 0.064 |
| 33 | 33 | 0.141 |
| 34 | 34 | 0.611 |
| 35 | 35 | 0.75 |
| 36 | 36 | 0.478 |
| 37 | 37 | 0.284 |
| 38 | 38 | 0.327 |
| 39 | 39 | 0.977 |
| 4 | 4 | 0.629 |
| 40 | 40 | 0.487 |
| 41 | 41 | 0.0426 |
| 42 | 42 | 0.905 |
| 43 | 43 | 0.303 |
| 44 | 44 | 0.816 |
| 45 | 45 | 0.346 |
| 46 | 46 | 0.839 |
| 47 | 47 | 0.956 |
| 48 | 48 | 0.9 |
| 49 | 49 | 0.285 |
| 5 | 5 | 0.396 |
| 50 | 50 | 0.553 |
| 51 | 51 | 0.747 |
| 52 | 52 | 0.165 |
| 53 | 53 | 0.169 |
| 54 | 54 | 0.507 |
| 55 | 55 | 0.914 |
| 56 | 56 | 0.987 |
| 57 | 57 | 0.98 |
| 58 | 58 | 0.106 |
| 59 | 59 | 0.422 |
| 6 | 6 | 0.863 |
| 60 | 60 | 0.011 |
| 61 | 61 | 0.377 |
| 62 | 62 | 0.0308 |
| 63 | 63 | 0.929 |
| 64 | 64 | 0.592 |
| 65 | 65 | 0.183 |
| 66 | 66 | 0.0232 |
| 67 | 67 | 0.701 |
| 68 | 68 | 0.823 |
| 69 | 69 | 0.723 |
| 7 | 7 | 0.399 |
| 70 | 70 | 2.72358e-5 |
| 71 | 71 | 0.723 |
| 72 | 72 | 0.787 |
| 73 | 73 | 0.839 |
| 74 | 74 | 0.556 |
| 75 | 75 | 0.598 |
| 76 | 76 | 0.174 |
| 77 | 77 | 0.763 |
| 78 | 78 | 0.981 |
| 79 | 79 | 0.59 |
| 8 | 8 | 0.926 |
| 80 | 80 | 0.536 |
| 81 | 81 | 0.265 |
| 82 | 82 | 0.0447 |
| 83 | 83 | 0.289 |
| 84 | 84 | 0.267 |
| 85 | 85 | 0.0286 |
| 86 | 86 | 0.407 |
| 87 | 87 | 0.519 |
| 88 | 88 | 0.779 |
| 89 | 89 | 0.192 |
| 9 | 9 | 0.971 |
| 90 | 90 | 0.8 |
| 91 | 91 | 0.234 |
| 92 | 92 | 0.195 |
| 93 | 93 | 0.9 |
| 94 | 94 | 0.618 |
| 95 | 95 | 0.314 |
| 96 | 96 | 0.359 |
| 97 | 97 | 0.845 |
| 98 | 98 | 0.0106 |
| 99 | 99 | 0.0204 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12597
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000177 human smooth muscle cell of umbilical vein sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002588 (smooth muscle cell of the umbilical vein)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001638 (vein)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0010260 (umbilical blood vessel)
0003920 (venous blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0002066 (umbilical vein)
0004535 (cardiovascular system)
0004537 (blood vasculature)
0004582 (venous system)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000177 (human smooth muscle cell of umbilical vein sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
