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(Created page with "{{f5samples |id=FF:11697-123A5 |name=Mesenchymal Stem Cells - bone marrow, donor3 |sample_id=11697 |rna_tube_id=123A5 |rna_box=123 |rna_position=A5 |sample_cell_lot=N/A...")
 
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{{f5samples
{{f5samples
|id=FF:11697-123A5
|DRA_sample_Accession=CAGE@SAMD00005083
|name=Mesenchymal Stem Cells - bone marrow, donor3
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005083
|sample_id=11697
|accession_numbers=CAGE;DRX008353;DRR009225;DRZ000650;DRZ002035;DRZ012000;DRZ013385
|rna_tube_id=123A5
|accession_numbers_RNASeq=sRNA-Seq;DRX037160;DRR041526;DRZ007168
|rna_box=123
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0010317,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405
|rna_position=A5
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002092,CL:0002540
|sample_cell_lot=N/A
|sample_cell_catalog=lot:3654
|sample_company=Sciencell/3H
|rna_lot_number=
|rna_catalog_number=SC7505
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=bone marrow
|sample_donor(cell lot)=
|sample_sex=
|sample_age=
|sample_ethnicity=
|rna_rin=9.60000
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=mesenchymal stem cell
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
|rna_weight_ug=10.00000
|rna_concentration=1.36000
|sample_note=
|profile_hcage=CNhs12126,LSID839,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10010,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002092,CL:0002320,CL:0002371,CL:0002540
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000479,UBERON:0000480,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001062,UBERON:0001434,UBERON:0001474,UBERON:0002050,UBERON:0002193,UBERON:0002204,UBERON:0002371,UBERON:0002384,UBERON:0002390,UBERON:0002405,UBERON:0002532,UBERON:0004120,UBERON:0004765,UBERON:0005423
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000097
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr7:19157248..19157268,-!p1@TWIST1!1.82!173.17!TWIST1;;chr6:34204921..34204939,+!p3@HMGA1!1.72!1456.00!HMGA1;;chr12:66218255..66218304,+!p3@HMGA2!1.64!110.83!HMGA2;;chr14:61116183..61116208,-!p1@SIX1!1.59!138.54!SIX1;;chr7:27205136..27205164,-!p1@HOXA9!1.50!30.37!HOXA9;;chr16:86600426..86600441,+!p1@FOXC2!1.44!63.94!FOXC2;;chr5:134369905..134369972,-!p1@PITX1!1.42!38.36!PITX1;;chr11:65686802..65686818,+!p6@DRAP1!1.38!39.16!DRAP1;;chr7:27224842..27224872,-!p1@HOXA11!1.37!22.38!HOXA11;;chr12:66218598..66218645,+!p2@HMGA2!1.36!97.51!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!1.34!30.37!HMGA2;;chr12:66218836..66218888,+!p1@HMGA2!1.32!179.30!HMGA2;;chr1:170633348..170633399,+!p2@PRRX1!1.32!26.91!PRRX1;;chr11:46299199..46299233,+!p1@CREB3L1!1.30!95.91!CREB3L1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.30!18.92!HOXC5;;chr11:46299539..46299620,+!p2@CREB3L1!1.29!31.17!CREB3L1;;chr17:59477233..59477263,+!p1@TBX2!1.28!55.68!TBX2;;chr12:54379029..54379057,+!p2@HOXC10!1.28!17.85!HOXC10;;chr1:170632285..170632309,+!p1@PRRX1!1.25!18.92!PRRX1;;chr12:54378923..54378966,+!p1@HOXC10!1.23!15.99!HOXC10;;chr7:27205106..27205134,-!p2@HOXA9!1.22!15.45!HOXA9;;chr2:5832508..5832524,+!p1@SOX11!1.19!14.65!SOX11;;chr7:27224795..27224840,-!p2@HOXA11!1.18!14.12!HOXA11;;chr11:65686732..65686756,+!p2@DRAP1!1.13!53.02!DRAP1;;chr6:34204672..34204692,+!p1@HMGA1!1.11!1323.59!HMGA1;;chr7:96654133..96654150,-!p1@DLX5!1.11!11.99!DLX5;;chr11:65687362..65687436,+!p3@DRAP1!1.10!53.28!DRAP1;;chr12:66218183..66218209,+!p4@HMGA2!1.10!22.38!HMGA2;;chr12:54380036..54380091,+!p4@HOXC10!1.10!11.72!HOXC10;;chr4:174451370..174451387,-!p1@HAND2!1.08!10.92!HAND2;;chr20:30193083..30193098,+!p1@ID1!1.04!808.32!ID1;;chr12:66218378..66218401,+!p6@HMGA2!1.02!14.65!HMGA2;;chr9:132427972..132428056,+!p1@PRRX2!1.02!12.52!PRRX2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.02!10.12!GLIS1;;chr11:65687222..65687240,+!p7@DRAP1!1.01!11.99!DRAP1;;chr11:65667884..65667895,-!p2@FOSL1!1.00!35.70!FOSL1;;chr7:27213893..27213954,-!p1@HOXA10!1.00!9.06!HOXA10;;chr6:45296048..45296082,+!p1@RUNX2!0.99!10.12!RUNX2;;chr2:85981107..85981120,+!p3@ATOH8!0.99!8.79!ATOH8;;chr16:54320101..54320125,-!p4@IRX3!0.98!12.26!IRX3;;chr6:134210243..134210257,+!p1@TCF21!0.98!8.53!TCF21;;chr19:47523058..47523114,+!p1@NPAS1!0.98!8.53!NPAS1;;chr11:65686952..65686975,+!p5@DRAP1!0.96!46.36!DRAP1;;chr7:19157043..19157088,-!p2@TWIST1!0.95!20.25!TWIST1;;chr2:200322654..200322707,-!p2@SATB2!0.94!11.46!SATB2;;chr14:61116168..61116180,-!p2@SIX1!0.94!8.79!SIX1;;chr7:96654026..96654061,-!p2@DLX5!0.94!7.73!DLX5;;chr14:75988771..75988826,+!p1@BATF!0.93!10.12!BATF;;chr12:54393880..54393962,+!p1@HOXC9!0.93!7.46!HOXC9;;chr8:49833948..49833973,-!p2@SNAI2!0.92!49.02!SNAI2;;chr17:59477197..59477212,+!p2@TBX2!0.91!12.52!TBX2;;chr16:54320617..54320643,-!p3@IRX3!0.91!9.32!IRX3;;chr7:27192185..27192209,-!p1@HOXA3!0.91!7.19!HOXA3;;chr2:45236540..45236577,-!p1@SIX2!0.91!7.19!SIX2;;chr4:174450089..174450153,-!p2@HAND2!0.91!7.19!HAND2;;chr12:53614115..53614154,-!p1@RARG!0.90!38.63!RARG;;chr16:54320158..54320200,-!p5@IRX3!0.90!10.12!IRX3;;chr12:54380404..54380433,+!p3@HOXC10!0.90!6.93!HOXC10;;chr2:172967242..172967265,-!p2@DLX2!0.90!6.93!DLX2;;chr5:134369879..134369898,-!p2@PITX1!0.90!6.93!PITX1;;chr11:65667846..65667868,-!p1@FOSL1!0.89!188.36!FOSL1;;chr8:49833978..49833996,-!p1@SNAI2!0.89!144.67!SNAI2;;chr1:170633262..170633285,+!p3@PRRX1!0.89!7.73!PRRX1;;chr6:31126291..31126399,+!p1@TCF19!0.88!66.07!TCF19;;chr7:27196217..27196246,-!p2@HOXA7!0.88!6.66!HOXA7;;chr2:176994408..176994492,+!p1@HOXD8!0.88!6.66!HOXD8;;chr5:321810..321877,+!p1@AHRR!0.87!21.31!AHRR;;chr17:59477275..59477286,+!p3@TBX2!0.87!8.79!TBX2;;chr9:132427883..132427951,+!p2@PRRX2!0.87!6.39!PRRX2;;chr2:172949484..172949522,+!p1@DLX1!0.87!6.39!DLX1;;chr12:66218420..66218439,+!p12@HMGA2!0.87!6.39!HMGA2;;chr6:85473156..85473210,-!p2@TBX18!0.86!7.73!TBX18;;chr1:170632959..170632987,+!p4@PRRX1!0.86!6.93!PRRX1;;chr2:85980919..85980942,+!p4@ATOH8!0.86!6.66!ATOH8;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.85!6.13!HOXC5;;chr11:65687158..65687216,+!p4@DRAP1!0.84!35.97!DRAP1;;chr12:66218573..66218596,+!p7@HMGA2!0.84!9.06!HMGA2;;chr12:66218469..66218477,+!p16@HMGA2!0.84!5.86!HMGA2;;chr12:66218904..66218913,+!p11@HMGA2!0.84!5.86!HMGA2;;chr12:66218923..66218934,+!p14@HMGA2!0.84!5.86!HMGA2;;chr4:57522598..57522664,-!p3@HOPX!0.84!5.86!HOPX;;chr11:65687243..65687276,+!p8@DRAP1!0.83!7.99!DRAP1;;chr12:66218443..66218461,+!p8@HMGA2!0.83!7.46!HMGA2;;chr2:172967276..172967296,-!p3@DLX2!0.82!5.59!DLX2;;chr2:19558373..19558392,-!p1@OSR1!0.81!15.99!OSR1;;chr16:54320646..54320672,-!p2@IRX3!0.81!8.53!IRX3;;chr19:38720294..38720348,-!p1@DPF1!0.81!6.93!DPF1;;chr19:46801639..46801699,+!p1@HIF3A!0.80!5.33!HIF3A;;chrY:21906594..21906622,-!p1@KDM5D!0.80!5.33!KDM5D;;chr12:2986206..2986258,-!p2@FOXM1!0.79!33.84!FOXM1;;chr2:239756671..239756732,+!p1@TWIST2!0.79!17.85!TWIST2;;chr2:239756739..239756755,+!p2@TWIST2!0.79!9.32!TWIST2;;chr1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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002092;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002540;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 67: Line 43:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor3.CNhs12126.11697-123A5.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor3.CNhs12126.11697-123A5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor3.CNhs12126.11697-123A5.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor3.CNhs12126.11697-123A5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor3.CNhs12126.11697-123A5.hg38.nobarcode.ctss.bed.gz
|id=FF:11697-123A5
|is_a=EFO:0002091;;FF:0000097
|is_obsolete=
|library_id=CNhs12126
|library_id_phase_based=2:CNhs12126
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11697
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10010.GTTTCG.11697
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11697
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10010.GTTTCG.11697
|name=Mesenchymal Stem Cells - bone marrow, donor3
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs12126,LSID839,release011,COMPLETED
|profile_rnaseq=
|profile_srnaseq=SRhi10010,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=123
|rna_catalog_number=SC7505
|rna_concentration=1.36
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
|rna_lot_number=
|rna_od260/230=
|rna_od260/280=
|rna_position=A5
|rna_rin=9.6
|rna_sample_type=total RNA
|rna_tube_id=123A5
|rna_weight_ug=10
|rnaseq_library_id=SRhi10010.GTTTCG
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=lot:3654
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=mesenchymal stem cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Sciencell/3H
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;9.70336754481779e-236!GO:0043226;organelle;2.95420438048858e-199!GO:0043229;intracellular organelle;3.68827612124352e-199!GO:0043231;intracellular membrane-bound organelle;1.27251164333513e-198!GO:0043227;membrane-bound organelle;4.36252548377356e-198!GO:0005737;cytoplasm;4.84053949857406e-182!GO:0044422;organelle part;6.99780237107063e-152!GO:0044446;intracellular organelle part;9.85471494961364e-151!GO:0044444;cytoplasmic part;6.24128637612057e-138!GO:0032991;macromolecular complex;7.1823828370568e-96!GO:0044237;cellular metabolic process;3.43155273704691e-90!GO:0044238;primary metabolic process;2.71628493172826e-89!GO:0030529;ribonucleoprotein complex;2.81658551220296e-87!GO:0043170;macromolecule metabolic process;1.05313291269235e-80!GO:0005634;nucleus;3.9245975151962e-77!GO:0005739;mitochondrion;4.20417528698718e-77!GO:0043233;organelle lumen;2.55922819407102e-73!GO:0031974;membrane-enclosed lumen;2.55922819407102e-73!GO:0044428;nuclear part;1.92179115032942e-69!GO:0005515;protein binding;8.33925553765073e-69!GO:0003723;RNA binding;5.6259140850747e-61!GO:0005840;ribosome;1.5449021285418e-57!GO:0031090;organelle membrane;5.39914002739473e-54!GO:0044429;mitochondrial part;2.91325185989231e-52!GO:0003735;structural constituent of ribosome;6.90840924469169e-51!GO:0006412;translation;4.22642088981532e-49!GO:0043234;protein complex;2.02838269961397e-47!GO:0016043;cellular component organization and biogenesis;8.21406448653817e-47!GO:0009058;biosynthetic process;3.20522782990513e-46!GO:0043283;biopolymer metabolic process;1.72689984484226e-45!GO:0019538;protein metabolic process;2.1521450734497e-45!GO:0031967;organelle envelope;4.48590982942506e-45!GO:0031975;envelope;1.17180980873165e-44!GO:0033279;ribosomal subunit;2.61061407786467e-43!GO:0044249;cellular biosynthetic process;9.95839640626927e-43!GO:0006396;RNA processing;1.74658677886578e-42!GO:0031981;nuclear lumen;5.2126213845006e-42!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.53657859914282e-41!GO:0009059;macromolecule biosynthetic process;6.40251811546691e-41!GO:0010467;gene expression;7.79341575646606e-41!GO:0044260;cellular macromolecule metabolic process;2.90748241315644e-40!GO:0044267;cellular protein metabolic process;1.93751138206872e-39!GO:0015031;protein transport;1.50241889698768e-38!GO:0005829;cytosol;3.18619057858721e-38!GO:0033036;macromolecule localization;7.84622380428856e-38!GO:0043228;non-membrane-bound organelle;1.667702536723e-36!GO:0043232;intracellular non-membrane-bound organelle;1.667702536723e-36!GO:0006996;organelle organization and biogenesis;3.1279691230364e-36!GO:0005740;mitochondrial envelope;2.31942869248023e-35!GO:0008104;protein localization;3.38061259526868e-35!GO:0045184;establishment of protein localization;4.89256983296966e-35!GO:0031966;mitochondrial membrane;3.23242335697208e-33!GO:0006259;DNA metabolic process;1.15365221840194e-32!GO:0046907;intracellular transport;1.9872442304932e-32!GO:0019866;organelle inner membrane;4.7231676458728e-32!GO:0016071;mRNA metabolic process;6.97063542095423e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.61822714865669e-31!GO:0065003;macromolecular complex assembly;2.69786306241844e-30!GO:0005743;mitochondrial inner membrane;3.14339609170497e-30!GO:0008380;RNA splicing;2.35031767767694e-29!GO:0022607;cellular component assembly;1.74874282374787e-27!GO:0006397;mRNA processing;1.92636581054709e-27!GO:0006886;intracellular protein transport;4.03831641786548e-27!GO:0022613;ribonucleoprotein complex biogenesis and assembly;9.61146608247425e-26!GO:0005654;nucleoplasm;1.39368859616066e-24!GO:0007049;cell cycle;2.5149545812151e-24!GO:0044445;cytosolic part;1.23854709317336e-23!GO:0015934;large ribosomal subunit;1.27959793415814e-22!GO:0003676;nucleic acid binding;1.31272936461393e-22!GO:0044455;mitochondrial membrane part;6.82024755237394e-22!GO:0005681;spliceosome;6.84733506503e-22!GO:0015935;small ribosomal subunit;8.75568765197573e-22!GO:0006119;oxidative phosphorylation;2.88429770700024e-21!GO:0031980;mitochondrial lumen;5.7730372262279e-21!GO:0005759;mitochondrial matrix;5.7730372262279e-21!GO:0051649;establishment of cellular localization;2.10454164960802e-20!GO:0044451;nucleoplasm part;2.49348511854234e-20!GO:0051641;cellular localization;3.06760645418936e-20!GO:0012505;endomembrane system;5.96065695212693e-20!GO:0022402;cell cycle process;6.55791518894238e-20!GO:0000278;mitotic cell cycle;1.19498722964633e-19!GO:0005783;endoplasmic reticulum;8.89488273389427e-19!GO:0000166;nucleotide binding;1.06207175043736e-18!GO:0006457;protein folding;1.67454084694268e-18!GO:0005730;nucleolus;2.58120009966094e-18!GO:0005746;mitochondrial respiratory chain;5.8031403298443e-18!GO:0051186;cofactor metabolic process;1.51892633888885e-17!GO:0048770;pigment granule;3.14905414099474e-17!GO:0042470;melanosome;3.14905414099474e-17!GO:0044432;endoplasmic reticulum part;5.32409692380862e-17!GO:0016462;pyrophosphatase activity;5.32409692380862e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.43891455406049e-17!GO:0016874;ligase activity;6.98827423430805e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;7.81796078895848e-17!GO:0005694;chromosome;1.02981239632604e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.85608211903035e-16!GO:0016070;RNA metabolic process;2.71982265197474e-16!GO:0017111;nucleoside-triphosphatase activity;3.08636433314699e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.33934852134835e-16!GO:0050136;NADH dehydrogenase (quinone) activity;7.23491377446981e-16!GO:0003954;NADH dehydrogenase activity;7.23491377446981e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.23491377446981e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);7.47746805671508e-16!GO:0005761;mitochondrial ribosome;7.63335343030786e-16!GO:0000313;organellar ribosome;7.63335343030786e-16!GO:0006974;response to DNA damage stimulus;8.57273845857916e-16!GO:0044427;chromosomal part;1.25584353615513e-15!GO:0022403;cell cycle phase;2.91735994415785e-15!GO:0051276;chromosome organization and biogenesis;3.1353943618834e-15!GO:0006512;ubiquitin cycle;1.23250270404239e-14!GO:0005794;Golgi apparatus;2.7013162445287e-14!GO:0007067;mitosis;2.93668641657113e-14!GO:0000087;M phase of mitotic cell cycle;3.03717682197649e-14!GO:0006605;protein targeting;3.79392816346346e-14!GO:0008134;transcription factor binding;4.36444144300488e-14!GO:0042775;organelle ATP synthesis coupled electron transport;4.80466374837354e-14!GO:0042773;ATP synthesis coupled electron transport;4.80466374837354e-14!GO:0030964;NADH dehydrogenase complex (quinone);6.01275675537727e-14!GO:0045271;respiratory chain complex I;6.01275675537727e-14!GO:0005747;mitochondrial respiratory chain complex I;6.01275675537727e-14!GO:0022618;protein-RNA complex assembly;9.40661358931557e-14!GO:0006325;establishment and/or maintenance of chromatin architecture;1.32475881426989e-13!GO:0044265;cellular macromolecule catabolic process;1.76538511283024e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.92674118014426e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.97904355512083e-13!GO:0006281;DNA repair;2.35627391020176e-13!GO:0000502;proteasome complex (sensu Eukaryota);2.72696757220671e-13!GO:0006732;coenzyme metabolic process;2.84254875641095e-13!GO:0043285;biopolymer catabolic process;4.15027356366978e-13!GO:0032553;ribonucleotide binding;5.56039000331431e-13!GO:0032555;purine ribonucleotide binding;5.56039000331431e-13!GO:0006260;DNA replication;5.96802777982081e-13!GO:0006323;DNA packaging;7.00445806907362e-13!GO:0017076;purine nucleotide binding;8.88463370643078e-13!GO:0043412;biopolymer modification;1.2540334398141e-12!GO:0051082;unfolded protein binding;1.82295878501728e-12!GO:0009057;macromolecule catabolic process;1.97154342017067e-12!GO:0044248;cellular catabolic process;2.49845353159681e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.81280459117573e-12!GO:0042254;ribosome biogenesis and assembly;3.23026411936675e-12!GO:0008135;translation factor activity, nucleic acid binding;3.32169446531772e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;4.26413793893012e-12!GO:0000375;RNA splicing, via transesterification reactions;4.26413793893012e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.26413793893012e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;4.4197569766154e-12!GO:0048193;Golgi vesicle transport;4.84485791003402e-12!GO:0005789;endoplasmic reticulum membrane;4.90934889041732e-12!GO:0009719;response to endogenous stimulus;6.35067923293398e-12!GO:0019941;modification-dependent protein catabolic process;6.42356042922642e-12!GO:0043632;modification-dependent macromolecule catabolic process;6.42356042922642e-12!GO:0005524;ATP binding;6.61699088547663e-12!GO:0006511;ubiquitin-dependent protein catabolic process;8.21724431050023e-12!GO:0044257;cellular protein catabolic process;9.14922089695695e-12!GO:0032559;adenyl ribonucleotide binding;1.19062288956129e-11!GO:0000279;M phase;1.36873524476908e-11!GO:0009055;electron carrier activity;2.07226137583506e-11!GO:0030554;adenyl nucleotide binding;2.8248167261143e-11!GO:0006464;protein modification process;3.60839979342073e-11!GO:0051301;cell division;3.74393381339459e-11!GO:0005793;ER-Golgi intermediate compartment;4.03045924907881e-11!GO:0030163;protein catabolic process;5.76144270850067e-11!GO:0005635;nuclear envelope;7.25891256239092e-11!GO:0051726;regulation of cell cycle;8.08683156853908e-11!GO:0000074;regulation of progression through cell cycle;1.13301046648905e-10!GO:0000785;chromatin;1.2898976620384e-10!GO:0006333;chromatin assembly or disassembly;1.3177944466011e-10!GO:0006399;tRNA metabolic process;1.39597629937589e-10!GO:0065004;protein-DNA complex assembly;1.46414806215693e-10!GO:0031965;nuclear membrane;2.04976898195247e-10!GO:0044453;nuclear membrane part;2.68512264195369e-10!GO:0016192;vesicle-mediated transport;5.83390649977107e-10!GO:0012501;programmed cell death;5.89553222751316e-10!GO:0006913;nucleocytoplasmic transport;6.91890632494762e-10!GO:0006334;nucleosome assembly;9.72743041181568e-10!GO:0006915;apoptosis;1.08990955587116e-09!GO:0051169;nuclear transport;1.44731180186125e-09!GO:0006163;purine nucleotide metabolic process;1.88758710611361e-09!GO:0051188;cofactor biosynthetic process;1.90457636320228e-09!GO:0009259;ribonucleotide metabolic process;2.05526285322138e-09!GO:0016604;nuclear body;2.30035021398575e-09!GO:0003743;translation initiation factor activity;2.31081608794357e-09!GO:0031497;chromatin assembly;2.65366122870849e-09!GO:0043687;post-translational protein modification;2.83202420273042e-09!GO:0030532;small nuclear ribonucleoprotein complex;3.03639129372154e-09!GO:0003712;transcription cofactor activity;3.44810714308291e-09!GO:0065002;intracellular protein transport across a membrane;6.22543337022134e-09!GO:0008639;small protein conjugating enzyme activity;6.69422451558988e-09!GO:0009150;purine ribonucleotide metabolic process;6.87417779181439e-09!GO:0008219;cell death;7.77372549895383e-09!GO:0016265;death;7.77372549895383e-09!GO:0042623;ATPase activity, coupled;7.87653105136954e-09!GO:0015630;microtubule cytoskeleton;8.5282884947035e-09!GO:0006164;purine nucleotide biosynthetic process;1.15020416523807e-08!GO:0006461;protein complex assembly;1.16139294515543e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.20952316681197e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.20952316681197e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.20952316681197e-08!GO:0017038;protein import;1.39041676368661e-08!GO:0006364;rRNA processing;1.45505226298195e-08!GO:0004842;ubiquitin-protein ligase activity;1.52767526007738e-08!GO:0016740;transferase activity;1.64479945705149e-08!GO:0016887;ATPase activity;1.69057189542541e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.69480215379478e-08!GO:0008565;protein transporter activity;1.69766975580345e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.69943867363304e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.46333531685937e-08!GO:0009260;ribonucleotide biosynthetic process;2.47875266862899e-08!GO:0005643;nuclear pore;2.53457086721485e-08!GO:0007005;mitochondrion organization and biogenesis;2.89983785138096e-08!GO:0006413;translational initiation;2.99837161137999e-08!GO:0009141;nucleoside triphosphate metabolic process;3.33610250812745e-08!GO:0019787;small conjugating protein ligase activity;3.73211564393323e-08!GO:0009152;purine ribonucleotide biosynthetic process;4.07744214990097e-08!GO:0043038;amino acid activation;4.46201156918905e-08!GO:0006418;tRNA aminoacylation for protein translation;4.46201156918905e-08!GO:0043039;tRNA aminoacylation;4.46201156918905e-08!GO:0009199;ribonucleoside triphosphate metabolic process;4.61118778314402e-08!GO:0016072;rRNA metabolic process;4.73999752629703e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;6.05476859330347e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.00199062852433e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.00199062852433e-07!GO:0048523;negative regulation of cellular process;1.25763560202021e-07!GO:0006446;regulation of translational initiation;1.30218816911251e-07!GO:0016491;oxidoreductase activity;1.30218816911251e-07!GO:0009060;aerobic respiration;1.42886840361951e-07!GO:0016881;acid-amino acid ligase activity;1.45847473019739e-07!GO:0050794;regulation of cellular process;1.67851063324025e-07!GO:0030120;vesicle coat;1.89752854047486e-07!GO:0030662;coated vesicle membrane;1.89752854047486e-07!GO:0015078;hydrogen ion transmembrane transporter activity;2.73632616546611e-07!GO:0006366;transcription from RNA polymerase II promoter;2.85551282798938e-07!GO:0005788;endoplasmic reticulum lumen;3.03145272733954e-07!GO:0006888;ER to Golgi vesicle-mediated transport;3.20492818833783e-07!GO:0048475;coated membrane;3.49895708573714e-07!GO:0030117;membrane coat;3.49895708573714e-07!GO:0009056;catabolic process;3.49895708573714e-07!GO:0009117;nucleotide metabolic process;3.8507080925833e-07!GO:0016568;chromatin modification;3.95575695284969e-07!GO:0009142;nucleoside triphosphate biosynthetic process;4.41602674939502e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.41602674939502e-07!GO:0016607;nuclear speck;4.45696102645638e-07!GO:0046930;pore complex;4.55493299129166e-07!GO:0015986;ATP synthesis coupled proton transport;5.11166021074631e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.11166021074631e-07!GO:0046034;ATP metabolic process;5.14377511948113e-07!GO:0051329;interphase of mitotic cell cycle;5.26639271859927e-07!GO:0009108;coenzyme biosynthetic process;5.60522563400137e-07!GO:0005768;endosome;6.07185751509635e-07!GO:0003697;single-stranded DNA binding;6.64175154771453e-07!GO:0016779;nucleotidyltransferase activity;7.64658580687243e-07!GO:0051325;interphase;8.5585586647814e-07!GO:0045333;cellular respiration;8.77878125601547e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;9.45995205705621e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;9.45995205705621e-07!GO:0016853;isomerase activity;1.10521385090371e-06!GO:0044431;Golgi apparatus part;1.1858497960056e-06!GO:0042981;regulation of apoptosis;1.40385829370291e-06!GO:0019829;cation-transporting ATPase activity;1.40542655586839e-06!GO:0004386;helicase activity;1.43791883852477e-06!GO:0043067;regulation of programmed cell death;1.56674754134756e-06!GO:0005667;transcription factor complex;1.75376757019961e-06!GO:0005762;mitochondrial large ribosomal subunit;2.45380283044613e-06!GO:0000315;organellar large ribosomal subunit;2.45380283044613e-06!GO:0008026;ATP-dependent helicase activity;2.72324900099405e-06!GO:0031324;negative regulation of cellular metabolic process;2.85531073851848e-06!GO:0045259;proton-transporting ATP synthase complex;2.8584087947674e-06!GO:0006091;generation of precursor metabolites and energy;3.0343332713992e-06!GO:0043566;structure-specific DNA binding;3.25850884084104e-06!GO:0006099;tricarboxylic acid cycle;3.6390728610533e-06!GO:0046356;acetyl-CoA catabolic process;3.6390728610533e-06!GO:0048519;negative regulation of biological process;3.65730355652283e-06!GO:0005813;centrosome;4.04058774492066e-06!GO:0016469;proton-transporting two-sector ATPase complex;4.4251493521841e-06!GO:0006754;ATP biosynthetic process;4.5387253973721e-06!GO:0006753;nucleoside phosphate metabolic process;4.5387253973721e-06!GO:0008654;phospholipid biosynthetic process;4.80986082781453e-06!GO:0006084;acetyl-CoA metabolic process;5.61368298846639e-06!GO:0016563;transcription activator activity;5.72873758778842e-06!GO:0032446;protein modification by small protein conjugation;6.876488951942e-06!GO:0051246;regulation of protein metabolic process;6.93220985643412e-06!GO:0006403;RNA localization;7.13414085689326e-06!GO:0005819;spindle;7.6409504179889e-06!GO:0050657;nucleic acid transport;8.54347637062177e-06!GO:0051236;establishment of RNA localization;8.54347637062177e-06!GO:0050658;RNA transport;8.54347637062177e-06!GO:0003899;DNA-directed RNA polymerase activity;8.75235824041437e-06!GO:0051187;cofactor catabolic process;9.1697742238221e-06!GO:0016567;protein ubiquitination;1.02922688634673e-05!GO:0005815;microtubule organizing center;1.05048434596716e-05!GO:0003924;GTPase activity;1.06914188429053e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.10837081764116e-05!GO:0051170;nuclear import;1.35143541276541e-05!GO:0009109;coenzyme catabolic process;1.35143541276541e-05!GO:0044440;endosomal part;1.37776111097159e-05!GO:0010008;endosome membrane;1.37776111097159e-05!GO:0005770;late endosome;1.39693266758827e-05!GO:0006752;group transfer coenzyme metabolic process;1.41947210821715e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.4963975299376e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.65402256744229e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.72505208787014e-05!GO:0019899;enzyme binding;1.73295646909487e-05!GO:0000786;nucleosome;2.12843435756386e-05!GO:0006606;protein import into nucleus;2.14636947461801e-05!GO:0000245;spliceosome assembly;2.26394380061648e-05!GO:0009892;negative regulation of metabolic process;2.61641365260915e-05!GO:0019843;rRNA binding;2.61645670627422e-05!GO:0006793;phosphorus metabolic process;2.68390766111535e-05!GO:0006796;phosphate metabolic process;2.68390766111535e-05!GO:0045786;negative regulation of progression through cell cycle;2.78753493999838e-05!GO:0005773;vacuole;2.80997870378487e-05!GO:0000139;Golgi membrane;3.3632402146403e-05!GO:0043623;cellular protein complex assembly;3.4349495943302e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.5238341551629e-05!GO:0019867;outer membrane;3.61400054008062e-05!GO:0005905;coated pit;3.71782454329216e-05!GO:0006916;anti-apoptosis;3.79734954956777e-05!GO:0000151;ubiquitin ligase complex;3.98677259050333e-05!GO:0016564;transcription repressor activity;4.17398980112603e-05!GO:0031968;organelle outer membrane;4.27807573201348e-05!GO:0005798;Golgi-associated vesicle;4.72435534162542e-05!GO:0050789;regulation of biological process;4.76722664664393e-05!GO:0006261;DNA-dependent DNA replication;4.86801254829387e-05!GO:0030867;rough endoplasmic reticulum membrane;5.32419046093508e-05!GO:0003713;transcription coactivator activity;5.67567911430986e-05!GO:0016023;cytoplasmic membrane-bound vesicle;5.71630590047584e-05!GO:0045454;cell redox homeostasis;5.98653393132643e-05!GO:0000314;organellar small ribosomal subunit;5.98653393132643e-05!GO:0005763;mitochondrial small ribosomal subunit;5.98653393132643e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;6.36074143441008e-05!GO:0016859;cis-trans isomerase activity;6.57700688614625e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;6.96030657011213e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;6.96030657011213e-05!GO:0006626;protein targeting to mitochondrion;7.43702039744189e-05!GO:0043069;negative regulation of programmed cell death;7.46095583480453e-05!GO:0031988;membrane-bound vesicle;9.63579501648088e-05!GO:0016481;negative regulation of transcription;9.66501927500375e-05!GO:0005741;mitochondrial outer membrane;9.70589563021793e-05!GO:0043066;negative regulation of apoptosis;9.70589563021793e-05!GO:0008361;regulation of cell size;9.81851785738408e-05!GO:0015980;energy derivation by oxidation of organic compounds;0.000100559700297602!GO:0016049;cell growth;0.000102063054836897!GO:0003714;transcription corepressor activity;0.000103162111129856!GO:0033116;ER-Golgi intermediate compartment membrane;0.000103213417895926!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000105708702264739!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000108890846411444!GO:0051427;hormone receptor binding;0.000109442862465524!GO:0004298;threonine endopeptidase activity;0.000109643844112509!GO:0016310;phosphorylation;0.000122653821970676!GO:0030133;transport vesicle;0.000125065461960571!GO:0000323;lytic vacuole;0.000147315281318197!GO:0005764;lysosome;0.000147315281318197!GO:0000775;chromosome, pericentric region;0.000155598956556609!GO:0007010;cytoskeleton organization and biogenesis;0.000156559105612969!GO:0016126;sterol biosynthetic process;0.000158072277551205!GO:0051028;mRNA transport;0.000158072277551205!GO:0008094;DNA-dependent ATPase activity;0.000163403681246163!GO:0016787;hydrolase activity;0.000172690128888747!GO:0005048;signal sequence binding;0.000174156508297027!GO:0046474;glycerophospholipid biosynthetic process;0.00017488174640789!GO:0005657;replication fork;0.000184004749566153!GO:0006839;mitochondrial transport;0.000194990796358453!GO:0043681;protein import into mitochondrion;0.000195546155752253!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000198539016625089!GO:0031252;leading edge;0.000202725607359728!GO:0019222;regulation of metabolic process;0.00022028520114837!GO:0035257;nuclear hormone receptor binding;0.000225726177835467!GO:0031410;cytoplasmic vesicle;0.000256181367391423!GO:0001558;regulation of cell growth;0.000264906109387957!GO:0008610;lipid biosynthetic process;0.000267830398453491!GO:0044262;cellular carbohydrate metabolic process;0.000315192126374983!GO:0031982;vesicle;0.00031694316142228!GO:0006613;cotranslational protein targeting to membrane;0.000317166060791526!GO:0007006;mitochondrial membrane organization and biogenesis;0.000386577560410653!GO:0000075;cell cycle checkpoint;0.000392099696016617!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000413018440021697!GO:0005791;rough endoplasmic reticulum;0.000448855023887882!GO:0005874;microtubule;0.00046773037927117!GO:0030036;actin cytoskeleton organization and biogenesis;0.000483140689494072!GO:0007051;spindle organization and biogenesis;0.000486314954143193!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000490241849465491!GO:0005769;early endosome;0.000494142085156897!GO:0030176;integral to endoplasmic reticulum membrane;0.000498190333110643!GO:0008033;tRNA processing;0.000526823181692776!GO:0008250;oligosaccharyl transferase complex;0.000550504328504511!GO:0009165;nucleotide biosynthetic process;0.000607504603834958!GO:0005885;Arp2/3 protein complex;0.000737833469951444!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000737833469951444!GO:0051789;response to protein stimulus;0.000892822764040196!GO:0006986;response to unfolded protein;0.000892822764040196!GO:0006695;cholesterol biosynthetic process;0.000893141273792556!GO:0065009;regulation of a molecular function;0.000925587169900394!GO:0043021;ribonucleoprotein binding;0.000934109301743118!GO:0005525;GTP binding;0.000991328650458547!GO:0051252;regulation of RNA metabolic process;0.00110109229592866!GO:0051920;peroxiredoxin activity;0.00111928620258708!GO:0003684;damaged DNA binding;0.00118338162580971!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00120781629563025!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00121076925597527!GO:0016741;transferase activity, transferring one-carbon groups;0.00122429473492917!GO:0030132;clathrin coat of coated pit;0.00126149869173472!GO:0046489;phosphoinositide biosynthetic process;0.00126507150160651!GO:0030880;RNA polymerase complex;0.00126507150160651!GO:0018196;peptidyl-asparagine modification;0.00135675325154048!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00135675325154048!GO:0003682;chromatin binding;0.00141534594602341!GO:0008168;methyltransferase activity;0.00143460220323724!GO:0043488;regulation of mRNA stability;0.00146807452595402!GO:0043487;regulation of RNA stability;0.00146807452595402!GO:0003724;RNA helicase activity;0.00147120467199524!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00147437696149546!GO:0005684;U2-dependent spliceosome;0.00149447957509481!GO:0000082;G1/S transition of mitotic cell cycle;0.00151146393934041!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00152561597357753!GO:0046467;membrane lipid biosynthetic process;0.0017169878925006!GO:0051168;nuclear export;0.00173642380340029!GO:0006414;translational elongation;0.00184721382534921!GO:0042802;identical protein binding;0.00185336252500352!GO:0030118;clathrin coat;0.00193939019609467!GO:0043284;biopolymer biosynthetic process;0.00195281012970984!GO:0044452;nucleolar part;0.00221907175471641!GO:0048522;positive regulation of cellular process;0.00226555277760773!GO:0006383;transcription from RNA polymerase III promoter;0.0023663888723817!GO:0006595;polyamine metabolic process;0.00242464573535149!GO:0005774;vacuolar membrane;0.00249168801042141!GO:0004576;oligosaccharyl transferase activity;0.00251975962547085!GO:0031902;late endosome membrane;0.00256216034720381!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00259829801584337!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00259829801584337!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00259829801584337!GO:0003678;DNA helicase activity;0.00262149512551462!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00273681580794731!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00273681580794731!GO:0006778;porphyrin metabolic process;0.00283226056380499!GO:0033013;tetrapyrrole metabolic process;0.00283226056380499!GO:0007088;regulation of mitosis;0.00283382780421339!GO:0015631;tubulin binding;0.00295781692003736!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00305216624863569!GO:0000428;DNA-directed RNA polymerase complex;0.00305216624863569!GO:0046483;heterocycle metabolic process;0.00317262016358752!GO:0006979;response to oxidative stress;0.003222380042601!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00329996815576209!GO:0015002;heme-copper terminal oxidase activity;0.00329996815576209!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00329996815576209!GO:0004129;cytochrome-c oxidase activity;0.00329996815576209!GO:0030658;transport vesicle membrane;0.00332835633502683!GO:0030029;actin filament-based process;0.00333071970589517!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00353857550624726!GO:0030663;COPI coated vesicle membrane;0.00355289915583292!GO:0030126;COPI vesicle coat;0.00355289915583292!GO:0045892;negative regulation of transcription, DNA-dependent;0.00380099953910101!GO:0006402;mRNA catabolic process;0.00383430398465136!GO:0000059;protein import into nucleus, docking;0.00395875689380308!GO:0016363;nuclear matrix;0.00398945404799441!GO:0031072;heat shock protein binding;0.00409183076853443!GO:0032508;DNA duplex unwinding;0.00412575781689464!GO:0032392;DNA geometric change;0.00412575781689464!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00419929265276391!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00426633978690177!GO:0008632;apoptotic program;0.00441103535393466!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00452701868315179!GO:0015399;primary active transmembrane transporter activity;0.00452701868315179!GO:0016044;membrane organization and biogenesis;0.0046787951877067!GO:0006779;porphyrin biosynthetic process;0.00469455674619672!GO:0033014;tetrapyrrole biosynthetic process;0.00469455674619672!GO:0006612;protein targeting to membrane;0.00481172072692862!GO:0006740;NADPH regeneration;0.00481172072692862!GO:0006098;pentose-phosphate shunt;0.00481172072692862!GO:0006082;organic acid metabolic process;0.00484429837428951!GO:0003729;mRNA binding;0.00490053642345162!GO:0032561;guanyl ribonucleotide binding;0.00494089236279376!GO:0019001;guanyl nucleotide binding;0.00494089236279376!GO:0030137;COPI-coated vesicle;0.00494089236279376!GO:0017166;vinculin binding;0.00501317885967054!GO:0040008;regulation of growth;0.00502730672233949!GO:0008139;nuclear localization sequence binding;0.00504441052043652!GO:0042158;lipoprotein biosynthetic process;0.00512739668153205!GO:0019752;carboxylic acid metabolic process;0.00515056056501824!GO:0006497;protein amino acid lipidation;0.00543298535149847!GO:0030134;ER to Golgi transport vesicle;0.00543298535149847!GO:0006268;DNA unwinding during replication;0.00551756545276364!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00562122675751152!GO:0040029;regulation of gene expression, epigenetic;0.00562122675751152!GO:0007243;protein kinase cascade;0.00568250101234181!GO:0016272;prefoldin complex;0.00615983075327701!GO:0044437;vacuolar part;0.00633856398683219!GO:0008092;cytoskeletal protein binding;0.00636592032100672!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00655558982686007!GO:0006289;nucleotide-excision repair;0.00671406596134445!GO:0048471;perinuclear region of cytoplasm;0.00688955129386113!GO:0004674;protein serine/threonine kinase activity;0.00693888559248092!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0069837497107938!GO:0006818;hydrogen transport;0.00717539368222745!GO:0030119;AP-type membrane coat adaptor complex;0.0071796896622592!GO:0015992;proton transport;0.00718106415242677!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0072160048642673!GO:0000049;tRNA binding;0.00726442879547469!GO:0005765;lysosomal membrane;0.00726442879547469!GO:0019206;nucleoside kinase activity;0.00746741390984878!GO:0051539;4 iron, 4 sulfur cluster binding;0.00749318773663591!GO:0008186;RNA-dependent ATPase activity;0.00752053830021752!GO:0051087;chaperone binding;0.00792132276775564!GO:0042168;heme metabolic process;0.00811833385571037!GO:0007346;regulation of progression through mitotic cell cycle;0.00820333598203371!GO:0006506;GPI anchor biosynthetic process;0.00832407566943894!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0083622561466429!GO:0048487;beta-tubulin binding;0.00866707337846437!GO:0030660;Golgi-associated vesicle membrane;0.00881527124740275!GO:0045792;negative regulation of cell size;0.00902216165852866!GO:0005758;mitochondrial intermembrane space;0.00910834593551393!GO:0007050;cell cycle arrest;0.00923843590322656!GO:0030125;clathrin vesicle coat;0.00929498162694739!GO:0030665;clathrin coated vesicle membrane;0.00929498162694739!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00946880849118512!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00951270625396642!GO:0043414;biopolymer methylation;0.00972183649337436!GO:0005637;nuclear inner membrane;0.00974323264452298!GO:0006310;DNA recombination;0.00987229590510269!GO:0006220;pyrimidine nucleotide metabolic process;0.00993159306570462!GO:0006650;glycerophospholipid metabolic process;0.00993246114714237!GO:0006520;amino acid metabolic process;0.0100281915596927!GO:0030308;negative regulation of cell growth;0.0101551392911395!GO:0051540;metal cluster binding;0.0104125733459034!GO:0051536;iron-sulfur cluster binding;0.0104125733459034!GO:0006401;RNA catabolic process;0.0105483058595773!GO:0051287;NAD binding;0.01054953724374!GO:0050662;coenzyme binding;0.0105798413733989!GO:0051348;negative regulation of transferase activity;0.0107204847735696!GO:0009112;nucleobase metabolic process;0.0108526357280109!GO:0031323;regulation of cellular metabolic process;0.0108541823804686!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0108878676445958!GO:0033673;negative regulation of kinase activity;0.0112006829993613!GO:0006469;negative regulation of protein kinase activity;0.0112006829993613!GO:0065007;biological regulation;0.0113192897556006!GO:0030131;clathrin adaptor complex;0.011516492795846!GO:0030127;COPII vesicle coat;0.0118466707890501!GO:0012507;ER to Golgi transport vesicle membrane;0.0118466707890501!GO:0006505;GPI anchor metabolic process;0.0122371772692243!GO:0006891;intra-Golgi vesicle-mediated transport;0.0122853772911678!GO:0008629;induction of apoptosis by intracellular signals;0.0126639105846086!GO:0006302;double-strand break repair;0.0128605380709484!GO:0032259;methylation;0.013110893178153!GO:0006783;heme biosynthetic process;0.0134264491264013!GO:0000792;heterochromatin;0.0142843656935035!GO:0004527;exonuclease activity;0.0143113883885235!GO:0008047;enzyme activator activity;0.0145710501935158!GO:0006284;base-excision repair;0.0146998958134117!GO:0003711;transcription elongation regulator activity;0.0147784746012728!GO:0048468;cell development;0.0151352546466229!GO:0006350;transcription;0.015143373013478!GO:0006611;protein export from nucleus;0.0158757329742099!GO:0004004;ATP-dependent RNA helicase activity;0.0159526102092042!GO:0031970;organelle envelope lumen;0.0162469730420909!GO:0050790;regulation of catalytic activity;0.0171500766012658!GO:0051098;regulation of binding;0.0173512523852104!GO:0022890;inorganic cation transmembrane transporter activity;0.0178012392628323!GO:0045941;positive regulation of transcription;0.0178137848249494!GO:0009303;rRNA transcription;0.0178137848249494!GO:0006352;transcription initiation;0.0179067199415697!GO:0005862;muscle thin filament tropomyosin;0.0179364052927101!GO:0030041;actin filament polymerization;0.0181521256422688!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0187466482966247!GO:0006739;NADP metabolic process;0.0188156311907576!GO:0007093;mitotic cell cycle checkpoint;0.0190802806888122!GO:0000910;cytokinesis;0.0193457862889134!GO:0006509;membrane protein ectodomain proteolysis;0.0194010401850136!GO:0033619;membrane protein proteolysis;0.0194010401850136!GO:0031543;peptidyl-proline dioxygenase activity;0.0195964962698756!GO:0031529;ruffle organization and biogenesis;0.0195964962698756!GO:0051101;regulation of DNA binding;0.0196098724020098!GO:0005869;dynactin complex;0.019801994886999!GO:0051052;regulation of DNA metabolic process;0.0202640832689244!GO:0000123;histone acetyltransferase complex;0.0204214407316768!GO:0008286;insulin receptor signaling pathway;0.020521990931369!GO:0048037;cofactor binding;0.020521990931369!GO:0019798;procollagen-proline dioxygenase activity;0.0206384657045608!GO:0004518;nuclease activity;0.0207511874490179!GO:0030659;cytoplasmic vesicle membrane;0.0207577900981241!GO:0048500;signal recognition particle;0.0208278486584212!GO:0006118;electron transport;0.020904943253978!GO:0031124;mRNA 3'-end processing;0.020904943253978!GO:0007264;small GTPase mediated signal transduction;0.0210334551720073!GO:0007040;lysosome organization and biogenesis;0.021215659620689!GO:0003746;translation elongation factor activity;0.0212423917475445!GO:0043189;H4/H2A histone acetyltransferase complex;0.0216111341115077!GO:0000209;protein polyubiquitination;0.0219683540714103!GO:0006405;RNA export from nucleus;0.0222219259539383!GO:0035258;steroid hormone receptor binding;0.0222219259539383!GO:0030508;thiol-disulfide exchange intermediate activity;0.0222531287247032!GO:0000228;nuclear chromosome;0.0222531287247032!GO:0008637;apoptotic mitochondrial changes;0.0231325238914115!GO:0045936;negative regulation of phosphate metabolic process;0.0232364532602765!GO:0007033;vacuole organization and biogenesis;0.0233178857458952!GO:0008180;signalosome;0.0240270216898198!GO:0016569;covalent chromatin modification;0.0240776374356493!GO:0030521;androgen receptor signaling pathway;0.0244908349919499!GO:0000084;S phase of mitotic cell cycle;0.024565525392171!GO:0031272;regulation of pseudopodium formation;0.024565525392171!GO:0031269;pseudopodium formation;0.024565525392171!GO:0031344;regulation of cell projection organization and biogenesis;0.024565525392171!GO:0031268;pseudopodium organization and biogenesis;0.024565525392171!GO:0031346;positive regulation of cell projection organization and biogenesis;0.024565525392171!GO:0031274;positive regulation of pseudopodium formation;0.024565525392171!GO:0043433;negative regulation of transcription factor activity;0.0246959111610519!GO:0000096;sulfur amino acid metabolic process;0.0246959111610519!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0255391371259088!GO:0033559;unsaturated fatty acid metabolic process;0.0259315452658802!GO:0006636;unsaturated fatty acid biosynthetic process;0.0259315452658802!GO:0051128;regulation of cellular component organization and biogenesis;0.0259315452658802!GO:0015036;disulfide oxidoreductase activity;0.0260197441600143!GO:0016197;endosome transport;0.0264703527529469!GO:0005876;spindle microtubule;0.026535816056831!GO:0006007;glucose catabolic process;0.0266680770122325!GO:0000287;magnesium ion binding;0.0268008509259442!GO:0004003;ATP-dependent DNA helicase activity;0.0268008509259442!GO:0006730;one-carbon compound metabolic process;0.0268008509259442!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0268008509259442!GO:0010257;NADH dehydrogenase complex assembly;0.0268008509259442!GO:0033108;mitochondrial respiratory chain complex assembly;0.0268008509259442!GO:0005832;chaperonin-containing T-complex;0.0269085346271872!GO:0006458;'de novo' protein folding;0.0269085346271872!GO:0051084;'de novo' posttranslational protein folding;0.0269085346271872!GO:0043596;nuclear replication fork;0.0269085346271872!GO:0016860;intramolecular oxidoreductase activity;0.0270569495148015!GO:0006733;oxidoreduction coenzyme metabolic process;0.0274669397191152!GO:0005996;monosaccharide metabolic process;0.0281733441785016!GO:0030433;ER-associated protein catabolic process;0.0282029829641452!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0282029829641452!GO:0019318;hexose metabolic process;0.0282652663379878!GO:0000339;RNA cap binding;0.0285063693314102!GO:0051338;regulation of transferase activity;0.0285063693314102!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0287198387129006!GO:0045893;positive regulation of transcription, DNA-dependent;0.028769804111111!GO:0008538;proteasome activator activity;0.028833640092376!GO:0035267;NuA4 histone acetyltransferase complex;0.0289273414699316!GO:0008213;protein amino acid alkylation;0.0289273414699316!GO:0006479;protein amino acid methylation;0.0289273414699316!GO:0007021;tubulin folding;0.0290055479765802!GO:0016407;acetyltransferase activity;0.029421549467978!GO:0009451;RNA modification;0.0298140809813948!GO:0045926;negative regulation of growth;0.0299531021052451!GO:0030384;phosphoinositide metabolic process;0.0302985910108253!GO:0009116;nucleoside metabolic process;0.0303746881210244!GO:0008312;7S RNA binding;0.0307607578313216!GO:0031418;L-ascorbic acid binding;0.0309075363618344!GO:0005881;cytoplasmic microtubule;0.0309075363618344!GO:0006275;regulation of DNA replication;0.0312390487406746!GO:0003756;protein disulfide isomerase activity;0.0312390487406746!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0312390487406746!GO:0003690;double-stranded DNA binding;0.0318496493894277!GO:0006950;response to stress;0.0319033508844624!GO:0044433;cytoplasmic vesicle part;0.0319079222298035!GO:0030027;lamellipodium;0.0320891866462481!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0329132171976603!GO:0035035;histone acetyltransferase binding;0.0330325833940238!GO:0007017;microtubule-based process;0.0330890982328526!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0330890982328526!GO:0009262;deoxyribonucleotide metabolic process;0.0335395273406979!GO:0043492;ATPase activity, coupled to movement of substances;0.0335511397208039!GO:0043065;positive regulation of apoptosis;0.0335511397208039!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0336040462160672!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0336040462160672!GO:0016125;sterol metabolic process;0.0349357719408777!GO:0048144;fibroblast proliferation;0.0350363009737377!GO:0048145;regulation of fibroblast proliferation;0.0350363009737377!GO:0043022;ribosome binding;0.0350363009737377!GO:0030911;TPR domain binding;0.0350363009737377!GO:0000118;histone deacetylase complex;0.0352946059944613!GO:0046519;sphingoid metabolic process;0.0353776892962885!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0355857537125775!GO:0030145;manganese ion binding;0.0357625370739139!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0363460886734904!GO:0045039;protein import into mitochondrial inner membrane;0.0363460886734904!GO:0000030;mannosyltransferase activity;0.0367893317805258!GO:0008154;actin polymerization and/or depolymerization;0.0370292833146829!GO:0006607;NLS-bearing substrate import into nucleus;0.0371201461934107!GO:0016301;kinase activity;0.0372408689189601!GO:0007052;mitotic spindle organization and biogenesis;0.0377837001692273!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0377990501083673!GO:0050178;phenylpyruvate tautomerase activity;0.0378841758139234!GO:0043068;positive regulation of programmed cell death;0.0379883091155417!GO:0042393;histone binding;0.0381538978815868!GO:0000776;kinetochore;0.038288678646944!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0391783173431532!GO:0031301;integral to organelle membrane;0.039211285956236!GO:0045334;clathrin-coated endocytic vesicle;0.0392623820481177!GO:0008652;amino acid biosynthetic process;0.0394593440084463!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0394917739509315!GO:0000178;exosome (RNase complex);0.0396555894676786!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0397032624899958!GO:0022415;viral reproductive process;0.0398212867341947!GO:0001726;ruffle;0.0399753743424159!GO:0016584;nucleosome positioning;0.0404571946536241!GO:0046966;thyroid hormone receptor binding;0.0406814148940171!GO:0003887;DNA-directed DNA polymerase activity;0.0422718546249086!GO:0007034;vacuolar transport;0.0423152889007864!GO:0006807;nitrogen compound metabolic process;0.0424828165344232!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0426363289376335!GO:0045047;protein targeting to ER;0.0426363289376335!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0426993756781562!GO:0005096;GTPase activator activity;0.0427547055667821!GO:0006354;RNA elongation;0.0427547055667821!GO:0006596;polyamine biosynthetic process;0.0427615735044699!GO:0030128;clathrin coat of endocytic vesicle;0.0428228182675211!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0428228182675211!GO:0030122;AP-2 adaptor complex;0.0428228182675211!GO:0031625;ubiquitin protein ligase binding;0.0429281968358365!GO:0008320;protein transmembrane transporter activity;0.0435013741821987!GO:0016570;histone modification;0.0440959950292621!GO:0006338;chromatin remodeling;0.0446057256265538!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0446057256265538!GO:0030833;regulation of actin filament polymerization;0.0450692960872404!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0451530358338811!GO:0048518;positive regulation of biological process;0.0451530358338811!GO:0042770;DNA damage response, signal transduction;0.0452604726030973!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0453570153326071!GO:0004177;aminopeptidase activity;0.04560312799481!GO:0005652;nuclear lamina;0.0456632630821047!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0456964105979716!GO:0010468;regulation of gene expression;0.0460679559771407!GO:0006790;sulfur metabolic process;0.0466878223218228!GO:0009166;nucleotide catabolic process;0.0467382909707787!GO:0004680;casein kinase activity;0.0467382909707787!GO:0022884;macromolecule transmembrane transporter activity;0.0469902379347585!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0469902379347585!GO:0030031;cell projection biogenesis;0.0470370284339849!GO:0051775;response to redox state;0.0470370284339849!GO:0006980;redox signal response;0.0470370284339849!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0475856742034393!GO:0006144;purine base metabolic process;0.0475856742034393!GO:0006066;alcohol metabolic process;0.0478225959068218!GO:0031371;ubiquitin conjugating enzyme complex;0.0489661826444877!GO:0007059;chromosome segregation;0.0495814057424206
|sample_id=11697
|sample_note=
|sample_sex=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=bone marrow
|top_motifs=GTF2A1,2:1.47009036496;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.40157186282;HOX{A5,B5}:1.3246201563;HES1:1.13271695483;GZF1:1.10670746952;GFI1:1.09876734073;RXR{A,B,G}:1.08119249382;NR5A1,2:1.05694896832;ESR1:1.03251932829;RXRA_VDR{dimer}:1.00975409673;NR3C1:0.952693973839;GFI1B:0.888687090371;PPARG:0.852634440137;EN1,2:0.811735815227;PBX1:0.799718679969;IKZF1:0.798888195208;POU2F1..3:0.781396406569;ZBTB6:0.742519264136;PAX8:0.734093463209;ZNF238:0.711246695545;LHX3,4:0.689508337418;EBF1:0.671490387074;ZIC1..3:0.653486433891;ZNF423:0.645710858459;NR1H4:0.644779093797;XCPE1{core}:0.626999910307;TLX1..3_NFIC{dimer}:0.569050687092;TFAP4:0.550374039796;NFY{A,B,C}:0.520001547902;ZNF148:0.508462473345;E2F1..5:0.50136127248;LEF1_TCF7_TCF7L1,2:0.478382337823;SPZ1:0.470451952493;SRF:0.43891701439;TFCP2:0.435071789909;TFAP2{A,C}:0.395666072338;NFE2L1:0.393821118153;GLI1..3:0.392918495423;TOPORS:0.385641862986;ATF6:0.375284396222;TEAD1:0.364156450105;AR:0.357522390951;RREB1:0.346983709186;ZNF143:0.34034421915;BACH2:0.31444283396;KLF4:0.299926653076;ALX4:0.293412053537;UFEwm:0.293175978821;bHLH_family:0.292958585714;SOX17:0.284557452441;SOX{8,9,10}:0.280566181923;YY1:0.273275430057;TFDP1:0.268035803715;POU6F1:0.264783848833;TAL1_TCF{3,4,12}:0.260039570407;PAX5:0.257715399494;TP53:0.251297582209;CDC5L:0.250954689288;STAT5{A,B}:0.240582450603;NFE2L2:0.225380717804;HIC1:0.201150866627;ONECUT1,2:0.197238304219;HNF4A_NR2F1,2:0.194515106299;MZF1:0.189128127501;PDX1:0.157377019728;MTF1:0.155640261948;PAX3,7:0.146802392968;ESRRA:0.144390985022;NANOG:0.143273527127;MYB:0.132985223543;TBP:0.121105098202;TBX4,5:0.119525776059;ARID5B:0.115817608743;REST:0.100063759939;SP1:0.0962476801376;FOS_FOS{B,L1}_JUN{B,D}:0.0936925118437;GTF2I:0.092485956303;HOX{A6,A7,B6,B7}:0.0836719763225;HAND1,2:0.0798093020487;AIRE:0.0472406064835;NFE2:0.0470772254337;HOXA9_MEIS1:0.0209416113561;HNF1A:0.015171816638;FOSL2:-0.000729257561905;RUNX1..3:-0.0108214220758;ELK1,4_GABP{A,B1}:-0.0141962472576;NKX2-3_NKX2-5:-0.0141965716972;TFAP2B:-0.0304864317541;POU5F1:-0.0532971247221;RFX1:-0.0533707966432;FOXL1:-0.0660958013864;NR6A1:-0.0865846668755;HOX{A4,D4}:-0.0991083840505;NKX2-2,8:-0.115623451678;NFIX:-0.117404106873;PRRX1,2:-0.130413893135;EGR1..3:-0.130856892879;NRF1:-0.132967120841;HLF:-0.134434606167;FOXD3:-0.144072779716;MAFB:-0.164320242262;CRX:-0.176251160188;MYBL2:-0.176776099969;POU1F1:-0.183227170096;PAX1,9:-0.199548934877;POU3F1..4:-0.202702648917;STAT2,4,6:-0.218782645832;AHR_ARNT_ARNT2:-0.22164654644;MTE{core}:-0.234902393844;DMAP1_NCOR{1,2}_SMARC:-0.243444008815;MEF2{A,B,C,D}:-0.249431069864;PRDM1:-0.269511037876;PATZ1:-0.2769244617;NHLH1,2:-0.286582587906;NANOG{mouse}:-0.293280532822;HSF1,2:-0.303793667259;NFKB1_REL_RELA:-0.31990688852;XBP1:-0.323036746821;TEF:-0.323839645121;HBP1_HMGB_SSRP1_UBTF:-0.336511388745;OCT4_SOX2{dimer}:-0.340061161089;JUN:-0.358052706926;MED-1{core}:-0.36238404283;NFATC1..3:-0.366110727939;HMX1:-0.374294965889;BREu{core}:-0.391434403631;GATA6:-0.417063749108;CUX2:-0.422112457958;SOX5:-0.423394959728;MAZ:-0.425152013681;ETS1,2:-0.458086096294;FOX{I1,J2}:-0.474558089346;SPIB:-0.478917715657;EVI1:-0.487394742679;ZFP161:-0.495077897812;LMO2:-0.495511288787;SPI1:-0.51095237173;CEBPA,B_DDIT3:-0.512751162925;PAX4:-0.524250747194;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.548428456624;SMAD1..7,9:-0.562622556135;MYOD1:-0.564130624468;ELF1,2,4:-0.58207920792;GATA4:-0.586059047207;SOX2:-0.590608995495;CREB1:-0.594370485372;RFX2..5_RFXANK_RFXAP:-0.606171534148;SNAI1..3:-0.63394630443;NFIL3:-0.644891787577;NKX6-1,2:-0.653803103074;PITX1..3:-0.674558008402;NKX3-1:-0.682598805896;FOXM1:-0.701492791979;T:-0.70297640379;RORA:-0.708211284746;MYFfamily:-0.714813744028;ADNP_IRX_SIX_ZHX:-0.730206029896;VSX1,2:-0.738059676682;FOXA2:-0.785527629654;GCM1,2:-0.826455387851;ZEB1:-0.834005086635;ALX1:-0.837273920814;NKX3-2:-0.849834313293;ATF5_CREB3:-0.864291678885;FOXQ1:-0.872122390963;PAX2:-0.881066203508;ZNF384:-0.90417039246;FOXP3:-0.915583029024;ZBTB16:-0.920749470644;TGIF1:-0.932967060494;ATF2:-0.939017536987;PAX6:-0.949597990205;FOXP1:-0.989754670914;FOX{F1,F2,J1}:-1.01848912514;DBP:-1.03809536984;IRF1,2:-1.03836776701;EP300:-1.04577367661;STAT1,3:-1.04650803446;HIF1A:-1.05465593001;NKX2-1,4:-1.1090779406;SREBF1,2:-1.11857241432;ATF4:-1.12619886271;RBPJ:-1.13715208168;FOX{D1,D2}:-1.15860506634;TLX2:-1.19811215038;FOXO1,3,4:-1.21243257987;CDX1,2,4:-1.29421394513;IRF7:-1.31832138559;HMGA1,2:-1.410798629;BPTF:-1.42899775029;IKZF2:-1.43874904793;FOXN1:-1.46651772449
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11697-123A5;search_select_hide=table117:FF:11697-123A5
}}
}}

Latest revision as of 18:15, 4 June 2020

Name:Mesenchymal Stem Cells - bone marrow, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12126
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebone marrow
dev stageNA
sexNA
ageNA
cell typemesenchymal stem cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberSC7505
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005083
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12126 CAGE DRX008353 DRR009225
Accession ID Hg19

Library idBAMCTSS
CNhs12126 DRZ000650 DRZ002035
Accession ID Hg38

Library idBAMCTSS
CNhs12126 DRZ012000 DRZ013385
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005083
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10010.GTTTCG sRNA-Seq DRX037160 DRR041526
Accession ID Hg19

Library idBAMCTSS
SRhi10010.GTTTCG DRZ007168


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.134
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.103
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0775
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.389
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.17
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.353
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.163
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.221
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.742
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.67
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.185
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.103
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.535
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.315
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.531
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12126

Jaspar motifP-value
MA0002.20.719
MA0003.10.385
MA0004.10.448
MA0006.10.24
MA0007.10.0102
MA0009.10.155
MA0014.10.827
MA0017.10.213
MA0018.20.0137
MA0019.10.415
MA0024.10.0271
MA0025.10.125
MA0027.10.269
MA0028.10.63
MA0029.10.333
MA0030.10.0044
MA0031.14.53828e-4
MA0035.20.75
MA0038.10.0146
MA0039.20.541
MA0040.10.846
MA0041.10.459
MA0042.10.774
MA0043.18.39802e-5
MA0046.10.105
MA0047.20.29
MA0048.10.0464
MA0050.14.61253e-11
MA0051.11.0638e-7
MA0052.10.363
MA0055.10.00164
MA0057.10.154
MA0058.10.459
MA0059.10.206
MA0060.11.71537e-6
MA0061.10.806
MA0062.20.13
MA0065.20.139
MA0066.10.187
MA0067.10.0233
MA0068.10.759
MA0069.10.283
MA0070.10.03
MA0071.10.192
MA0072.10.753
MA0073.10.938
MA0074.10.145
MA0076.10.657
MA0077.10.363
MA0078.10.57
MA0079.20.692
MA0080.24.30099e-6
MA0081.10.00666
MA0083.10.00289
MA0084.10.972
MA0087.10.567
MA0088.10.0486
MA0090.10.211
MA0091.10.215
MA0092.10.936
MA0093.10.49
MA0099.20.00126
MA0100.10.997
MA0101.10.0776
MA0102.21.83726e-6
MA0103.10.183
MA0104.20.917
MA0105.10.548
MA0106.10.0891
MA0107.10.0665
MA0108.20.00848
MA0111.10.515
MA0112.20.0227
MA0113.10.0985
MA0114.10.237
MA0115.10.815
MA0116.10.225
MA0117.10.168
MA0119.10.352
MA0122.10.836
MA0124.10.765
MA0125.10.944
MA0131.10.634
MA0135.10.0378
MA0136.11.20912e-5
MA0137.20.0331
MA0138.20.124
MA0139.10.686
MA0140.10.94
MA0141.10.0403
MA0142.10.516
MA0143.10.911
MA0144.10.362
MA0145.10.398
MA0146.10.0389
MA0147.10.645
MA0148.10.396
MA0149.10.43
MA0150.10.546
MA0152.10.789
MA0153.10.945
MA0154.10.42
MA0155.10.18
MA0156.10.00258
MA0157.10.0492
MA0159.10.541
MA0160.10.459
MA0162.10.165
MA0163.10.0379
MA0164.10.616
MA0258.10.255
MA0259.10.831



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12126

Novel motifP-value
10.76
100.883
1000.558
1010.0588
1020.608
1030.65
1040.228
1050.539
1060.628
1070.202
1080.877
1090.00678
110.0594
1100.0421
1110.761
1120.782
1130.448
1140.964
1150.298
1160.0342
1170.211
1180.727
1190.66
120.6
1200.167
1210.541
1220.767
1230.00202
1240.251
1250.586
1260.649
1270.453
1280.929
1290.535
130.587
1300.0381
1310.629
1320.217
1330.472
1340.276
1350.544
1360.718
1370.0126
1380.0743
1390.3
140.973
1400.541
1410.209
1420.104
1430.285
1440.764
1450.441
1460.147
1470.266
1480.174
1490.472
150.784
1500.338
1510.705
1520.146
1530.102
1540.372
1550.826
1560.959
1570.632
1580.053
1590.752
160.224
1600.017
1610.524
1620.317
1630.45
1640.677
1650.191
1660.964
1670.447
1680.277
1690.0773
170.336
180.551
190.0514
20.45
200.968
210.72
220.0797
230.876
240.451
250.846
260.0207
270.372
280.0445
290.353
30.48
300.349
310.564
323.92818e-6
330.42
340.303
350.524
360.777
370.158
380.457
390.624
40.581
400.0718
410.318
420.705
430.298
440.991
450.401
460.117
470.187
480.181
490.479
50.361
500.192
510.527
520.563
530.242
540.788
550.765
560.2
570.399
580.351
590.012
60.546
600.836
610.639
620.49
630.237
640.325
650.123
660.0515
670.757
680.0434
690.0475
70.922
700.766
710.165
720.491
730.0263
740.413
750.336
760.483
770.082
780.425
790.253
80.0292
800.461
810.918
820.774
830.394
840.499
850.473
860.909
870.0686
880.415
890.257
90.385
900.091
910.485
920.858
930.888
940.98
950.0457
960.979
970.691
980.391
993.35404e-4



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12126


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002092 (bone marrow cell)
0002540 (mesenchymal stem cell of the bone marrow)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002371 (bone marrow)
0001474 (bone element)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004765 (skeletal element)
0010317 (germ layer / neural crest derived structure)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0002390 (hematopoietic system)
0002193 (hemolymphoid system)
0002405 (immune system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000097 (human mesenchymal stem cell of bone marrow sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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