FF:11901-125F2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005709 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008568;DRR009440;DRZ000865;DRZ002250;DRZ012215;DRZ013600 | ||
|ancestors_in_anatomy_facet= | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000219,CL:0000738,CL:0000990,CL:0000255,CL:0000451,CL:0000453 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0011136 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/migratory%2520langerhans%2520cells%252c%2520donor1.CNhs13535.11901-125F2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/migratory%2520langerhans%2520cells%252c%2520donor1.CNhs13535.11901-125F2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/migratory%2520langerhans%2520cells%252c%2520donor1.CNhs13535.11901-125F2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/migratory%2520langerhans%2520cells%252c%2520donor1.CNhs13535.11901-125F2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/migratory%2520langerhans%2520cells%252c%2520donor1.CNhs13535.11901-125F2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11901-125F2 | |id=FF:11901-125F2 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0011136 | ||
|is_obsolete= | |||
|library_id=CNhs13535 | |||
|library_id_phase_based=2:CNhs13535 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11901 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11901 | |||
|name=migratory langerhans cells, donor1 | |name=migratory langerhans cells, donor1 | ||
|namespace= | |namespace= | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13535,LSID1029,release012,COMPLETED | |profile_hcage=CNhs13535,LSID1029,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0.0773171348687735,0.0999572120259525,0,0,0,0,0.0395963939655186,0,0.0962894113927,-0.243744993142555,0,0,0,0,0,0,0,0,0,0,0.523528446466933,0.0773171348687735,0,-0.153323010348428,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.107241149531626,0,0,0,0,0,0,0,0.0773171348687735,-0.0242150211128343,0,0,0,0.469616316084648,0,-0.1143052261416,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0.142927500688746,0,0,0.199914424051905,0,0,0,0,0.0386585674343867,0,0,0.0134782136269062,0,-0.0300169089183899,-0.289937000136229,0.0773171348687735,0,0,-0.0584468268118252,0.0755855811231908,0,0,0.0386585674343867,0,0.101879072814198,-0.0998186333665085,0,0,0,0,0,0.0386585674343867,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0,0.0987718653760872,0.0773171348687735,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0.142927500688746,0,0,0.101879072814198,0,0,0.0773171348687735,0,0,0.0773171348687735,0.0773171348687735,0,0,0,0,0.406755468736867,0,-0.396769083883235,-0.000587641834725455,0,0.0773171348687735,-0.317156769130811,0,0.0773171348687735,0,0,0.199914424051905,0,0.0773171348687735,0.142927500688746,0,-0.128119866952565,0,-0.0504125515893149,0,0,0,0,-0.0186252810838506,-0.162544730209661,0,0.150141039864883,0.00897287379140534,0,0,0,0,-0.198776918989951,0,0.129404166550424,-0.0827201683234173,0.186438751128632,-0.56974639065612,0.153109765159525,0,0,0,-0.393473157717539,-0.57845554197351,0,0,-0.083121284317487,0.437833357637468,0,0,-0.391044581551635,0,0.0231497055611981,-0.0604397418968705,0,0,0,0,0,0,0.071463750344373,0.0773171348687735,0,0.0773171348687735,0.408050339231438,0,0,-0.0574934668214365,-0.184061095990222,0.0082485865968083,0,0,0,-0.0687262564476572,0,0,0.0666372154628115,-0.350736013296859,0,0.205206582284821,0,0.720786781385554,-0.0626376464192396,0.00960683743995626,-0.188124920145006,0.0525125746807661,-0.189981719549847,0,-0.412540622065394,0.0847389913292912,-0.00394235823433693,0.0737794906790894,-0.053600738856335,-1.08848100759836,-0.549980882456066,0,0.439923371419378,-0.0775089264793031,-0.325220415818051,0,0.312799839886215,-0.239831064132609,-0.0277979683423776,-0.59952368613134,-0.176798273818939,-0.451271005281277,0.190401436925212,-0.0395325284566706,-0.314508952207848,-0.0944111242308497,-0.296430499731618,0,0.469616316084648,-0.0472260894395127,-0.12081304783819,0.0850995133359805,-0.118417765426515,0,0.704097416300956,-0.0683442610773682,0,0.01982733924402,-0.532155858327949,0.439923371419378,-0.00648258910466509,0.268836732031328,0,0,0.142927500688746,0,0,-0.0740910991662467,0.331519477413137,0.0625579236470132,0,0.0709041947327635,0.0218961534414009,-0.172144255180504,0,-0.229283121682754,0,0,-0.150330654503709,0,-0.145315543864399,0.126221745843795,0.178822024835608,-0.0487432618055234,-0.0584468268118252,-0.0235778683006926,0.485148074512991,-0.226447032872428,-0.493526379587669,-0.0758385089403526,-0.0881268324752877,-0.0898223604110848,-0.289937000136229,0.168115831281216,-0.0650228174807524,-0.583529904229572,0,-0.140015950116953,0,-0.00721360480776312,0,-0.382557722914707,-0.463116616604467,0.396135420274771,0.317300863398286,0,-0.0616609238692477,1.19893678709531,0,-0.135723143846782,-0.0050075252407689,0.0773171348687735,-0.150367083334639,-0.697695966512583,0.359236575777811,0.0809722290304945,0,-0.790080158389657,0,0,-0.121278100967884,-0.0355616137124841,0,-0.0546305248934605,0.129719250580952,0.218667573596614,0.0269564272538124,0,0,-0.645700337992725,0,0,-0.406013639766126,-0.0636048451378017,-0.246131780372419,-0.176009206617982,-0.147251264328927,0.186790675748302,0,0.142927500688746,0.230522573266263,0.0773171348687735,-0.467993174674637,0,0,-0.111265517138485,-0.0393109781213592,0,0.0773171348687735,0,-0.123801940213391,0,0,0.0773171348687735,0,0,0,0,-0.111353527577189,-0.354833330216448,0.199914424051905,0.041452891889377,0,0,0,0,0,0,0,0.0773171348687735,0.378753092407077,-0.0630682408471177,-0.0457002808076467,0,0,0,0,-0.138406267684701,0.390371188287427,0.142927500688746,0.068051717554273,0.0773171348687735,0,0,0.0773171348687735,0.0567865108995351,0,0,0,0,0.0851970436350824,-0.090611191427182,0,0,0,-0.199637266733017,0,0,0,0,-0.0428794146861902,0,0,0.458041945322991,0,-0.211115691397645,0.118332544505063,0,-0.221990575772454,0.11105300705824,-0.0747639126252111,0,0,0.942888026249321,0,0.0655734967219975,0.421485853392166,0,0,0,0,0,0,0,0,0.0773171348687735,-0.136997377530982,0.0361812428422221,0,0,0,0,0,0,0,0,0,0,-0.666802752805587,0.050703444030236,-0.0640596705171081,0,0,0,0,0,0,0.0145525443554836,-0.265434889330174,0,0,0,0,0,0,0,0,-0.271511515611337,0,0,0.753835900552977,0,0,-0.0969923612426051,0,0,0,0.199914424051905,-0.48748998628511,0,0,0.0962894113927,0,0,0,0,0,0,0,0,0,0.0773171348687735,0,0,0,-0.0460019511666742,0.350755081561237,0,0,0,0,0,0,0,-0.27483329820609,0,0,0,0,1.85538671587923,0,0,0,-0.104796384789156,0,0.0395963939655186,0,0,0.199914424051905,0,0,0,0,0,0,0,0.336291958311133,0,0,0,0,0,0,0,0,0,0,-0.924122702301853,0,-0.144280015284163,-0.125934274376603,0,0,-0.193969785198655,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0.0773171348687735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.071463750344373,0.0289158538820791,0,0,0,0,0,0,0,-0.0979578962680575,0,0,0.579908556506536,0,0,0,0,0,0,0.242795701302724,-0.283220399823148,-0.141340892928234,0,0,0,-0.054385572482455,0.469616316084648,0,-0.118815666493049,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995404368871501,0,0,0,0,0,0,0.250283650344164,0,0.0773171348687735,0.138615779460339,0,0,0,0,0,0,0.00464720415897025,0,0,0,0,0,0,0,0,0,0,0,0,0.0386585674343867,0.0773171348687735,0,0,0.0386585674343867,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.0701587289682973,0,0,0,0,0,0,0.142927500688746,0,0,0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| |||
|rna_box=125 | |rna_box=125 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=1.2131 | |rna_weight_ug=1.2131 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.29323834768453e-253!GO:0043227;membrane-bound organelle;9.68423554456374e-207!GO:0043231;intracellular membrane-bound organelle;1.74745293678354e-206!GO:0043226;organelle;2.41552831698451e-205!GO:0043229;intracellular organelle;1.33611947807776e-204!GO:0005737;cytoplasm;8.78447002803306e-161!GO:0044422;organelle part;6.64069784002692e-125!GO:0044446;intracellular organelle part;1.42065775797393e-123!GO:0005634;nucleus;1.10928675948069e-103!GO:0044444;cytoplasmic part;9.76382884853638e-103!GO:0032991;macromolecular complex;4.13822013401963e-100!GO:0043170;macromolecule metabolic process;2.13089716304988e-99!GO:0044238;primary metabolic process;9.35224045322566e-99!GO:0044237;cellular metabolic process;2.04743799502529e-97!GO:0044428;nuclear part;1.87718877748991e-77!GO:0030529;ribonucleoprotein complex;8.13079151798665e-77!GO:0003723;RNA binding;3.35020017580058e-71!GO:0043233;organelle lumen;3.32079434122918e-70!GO:0031974;membrane-enclosed lumen;3.32079434122918e-70!GO:0005515;protein binding;1.31732137832314e-67!GO:0043283;biopolymer metabolic process;9.94850011541563e-66!GO:0010467;gene expression;2.87300629459048e-61!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.28789898144765e-59!GO:0033036;macromolecule localization;2.79024636228181e-54!GO:0015031;protein transport;4.03946715079676e-53!GO:0043234;protein complex;1.99924438812091e-52!GO:0006396;RNA processing;5.23802095982297e-52!GO:0005739;mitochondrion;9.87230784461772e-52!GO:0045184;establishment of protein localization;1.40937029954838e-50!GO:0008104;protein localization;1.54986120695366e-49!GO:0031981;nuclear lumen;8.63762294213031e-48!GO:0016071;mRNA metabolic process;1.26558282775834e-47!GO:0006412;translation;4.03428238998333e-45!GO:0019538;protein metabolic process;4.9434190444503e-45!GO:0016043;cellular component organization and biogenesis;9.88893234396358e-44!GO:0008380;RNA splicing;7.18131833527704e-42!GO:0006397;mRNA processing;6.56793905337793e-41!GO:0031090;organelle membrane;8.87594471212669e-41!GO:0003676;nucleic acid binding;9.10085351004265e-41!GO:0046907;intracellular transport;2.16761001720404e-40!GO:0044267;cellular protein metabolic process;8.25303179846729e-40!GO:0044260;cellular macromolecule metabolic process;1.79271502996399e-39!GO:0005840;ribosome;4.31908522936977e-39!GO:0044429;mitochondrial part;7.18746792700124e-39!GO:0005829;cytosol;1.43399533480632e-38!GO:0031967;organelle envelope;5.14981633196121e-37!GO:0006886;intracellular protein transport;6.07876754215446e-37!GO:0031975;envelope;1.20068286678053e-36!GO:0016070;RNA metabolic process;3.50754578394768e-35!GO:0065003;macromolecular complex assembly;4.30926554558404e-34!GO:0003735;structural constituent of ribosome;8.41603789463906e-34!GO:0009059;macromolecule biosynthetic process;3.53557437520032e-33!GO:0005654;nucleoplasm;6.54927687889908e-32!GO:0009058;biosynthetic process;7.57520585380725e-32!GO:0006996;organelle organization and biogenesis;2.75924649779146e-31!GO:0044249;cellular biosynthetic process;3.37705908106437e-31!GO:0005681;spliceosome;2.31014903537706e-30!GO:0022607;cellular component assembly;4.36367771575324e-29!GO:0033279;ribosomal subunit;6.41723669045622e-29!GO:0051649;establishment of cellular localization;6.7301989413286e-29!GO:0006259;DNA metabolic process;8.61620028709157e-29!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.08704702200137e-28!GO:0051641;cellular localization;2.98985235700346e-28!GO:0000166;nucleotide binding;5.66331382577595e-26!GO:0043228;non-membrane-bound organelle;1.24170674301244e-25!GO:0043232;intracellular non-membrane-bound organelle;1.24170674301244e-25!GO:0044451;nucleoplasm part;1.31766912531615e-25!GO:0005740;mitochondrial envelope;5.21330881676774e-25!GO:0016462;pyrophosphatase activity;2.84133554966266e-24!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.52643830609563e-24!GO:0016817;hydrolase activity, acting on acid anhydrides;5.28205646252094e-24!GO:0017111;nucleoside-triphosphatase activity;7.81838571706039e-24!GO:0031966;mitochondrial membrane;1.9847502431668e-23!GO:0005830;cytosolic ribosome (sensu Eukaryota);8.27798636627173e-23!GO:0019866;organelle inner membrane;8.74925290652344e-23!GO:0044445;cytosolic part;2.42830989541934e-22!GO:0044265;cellular macromolecule catabolic process;4.12766037664427e-22!GO:0008134;transcription factor binding;6.17340100163034e-22!GO:0048770;pigment granule;2.07262711446809e-21!GO:0042470;melanosome;2.07262711446809e-21!GO:0012501;programmed cell death;2.89750276709188e-21!GO:0006915;apoptosis;2.92332497122922e-21!GO:0005743;mitochondrial inner membrane;1.96476090057855e-20!GO:0006512;ubiquitin cycle;2.91580534625602e-20!GO:0008219;cell death;3.22218881748086e-20!GO:0016265;death;3.22218881748086e-20!GO:0006119;oxidative phosphorylation;6.22967891466878e-20!GO:0051603;proteolysis involved in cellular protein catabolic process;1.13200353911111e-19!GO:0019941;modification-dependent protein catabolic process;1.63052904366607e-19!GO:0043632;modification-dependent macromolecule catabolic process;1.63052904366607e-19!GO:0043285;biopolymer catabolic process;2.05274369584073e-19!GO:0006511;ubiquitin-dependent protein catabolic process;2.05274369584073e-19!GO:0044257;cellular protein catabolic process;3.27346740539843e-19!GO:0016874;ligase activity;3.6706842135591e-19!GO:0032553;ribonucleotide binding;4.51504087145481e-19!GO:0032555;purine ribonucleotide binding;4.51504087145481e-19!GO:0006457;protein folding;6.22269394893581e-19!GO:0009057;macromolecule catabolic process;8.68807432354156e-19!GO:0022618;protein-RNA complex assembly;1.62276895423885e-18!GO:0017076;purine nucleotide binding;2.21688847369879e-18!GO:0000502;proteasome complex (sensu Eukaryota);1.06729193231256e-17!GO:0016604;nuclear body;2.98395321681256e-17!GO:0044455;mitochondrial membrane part;3.4237291136861e-17!GO:0044248;cellular catabolic process;3.57128040095779e-17!GO:0050794;regulation of cellular process;4.32095058147494e-17!GO:0005730;nucleolus;7.5408502570612e-17!GO:0031980;mitochondrial lumen;8.11077050050769e-17!GO:0005759;mitochondrial matrix;8.11077050050769e-17!GO:0006605;protein targeting;1.15895332431134e-16!GO:0006974;response to DNA damage stimulus;1.40688753110448e-16!GO:0030163;protein catabolic process;2.57989521837325e-16!GO:0012505;endomembrane system;1.92858161830887e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;2.62220840296936e-15!GO:0000375;RNA splicing, via transesterification reactions;2.62220840296936e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.62220840296936e-15!GO:0015934;large ribosomal subunit;3.15074565115606e-15!GO:0016607;nuclear speck;5.49884334595016e-15!GO:0006325;establishment and/or maintenance of chromatin architecture;5.78216420321927e-15!GO:0051276;chromosome organization and biogenesis;1.12441302573686e-14!GO:0048193;Golgi vesicle transport;1.51816207558739e-14!GO:0006913;nucleocytoplasmic transport;1.83798598126068e-14!GO:0032559;adenyl ribonucleotide binding;2.10176396362844e-14!GO:0008135;translation factor activity, nucleic acid binding;2.41289518065459e-14!GO:0005524;ATP binding;2.41289518065459e-14!GO:0003712;transcription cofactor activity;2.60336286056016e-14!GO:0015935;small ribosomal subunit;2.67490194900041e-14!GO:0043412;biopolymer modification;3.07085034922814e-14!GO:0006323;DNA packaging;3.52426340545773e-14!GO:0042981;regulation of apoptosis;3.70538036755184e-14!GO:0051169;nuclear transport;4.10842733525476e-14!GO:0008565;protein transporter activity;4.84019589376915e-14!GO:0016887;ATPase activity;5.30923928432366e-14!GO:0043067;regulation of programmed cell death;6.1120359758932e-14!GO:0042623;ATPase activity, coupled;6.17553070899106e-14!GO:0005746;mitochondrial respiratory chain;9.15762161634205e-14!GO:0030554;adenyl nucleotide binding;1.09358860279185e-13!GO:0006281;DNA repair;1.1014720520441e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.27694359083202e-13!GO:0051186;cofactor metabolic process;1.72152732732736e-13!GO:0016192;vesicle-mediated transport;4.86575797607738e-13!GO:0005635;nuclear envelope;5.11046681448124e-13!GO:0007049;cell cycle;8.04861392121899e-13!GO:0019222;regulation of metabolic process;9.53814839649216e-13!GO:0051082;unfolded protein binding;1.1859950041892e-12!GO:0050136;NADH dehydrogenase (quinone) activity;1.3977504126241e-12!GO:0003954;NADH dehydrogenase activity;1.3977504126241e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.3977504126241e-12!GO:0006464;protein modification process;2.6753647729242e-12!GO:0004386;helicase activity;4.59158175888044e-12!GO:0044453;nuclear membrane part;4.76332010632196e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);7.53404866508646e-12!GO:0050789;regulation of biological process;8.37032555854523e-12!GO:0043687;post-translational protein modification;8.37032555854523e-12!GO:0009719;response to endogenous stimulus;9.58220425913041e-12!GO:0005794;Golgi apparatus;1.18254632906734e-11!GO:0003743;translation initiation factor activity;1.669225895795e-11!GO:0031965;nuclear membrane;1.69902779452393e-11!GO:0050657;nucleic acid transport;1.82246597076007e-11!GO:0051236;establishment of RNA localization;1.82246597076007e-11!GO:0050658;RNA transport;1.82246597076007e-11!GO:0008026;ATP-dependent helicase activity;2.08809337899929e-11!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.12398215609862e-11!GO:0042775;organelle ATP synthesis coupled electron transport;2.59292230409773e-11!GO:0042773;ATP synthesis coupled electron transport;2.59292230409773e-11!GO:0006403;RNA localization;2.66208206467502e-11!GO:0006413;translational initiation;2.88350855321218e-11!GO:0005694;chromosome;4.76154608477926e-11!GO:0030964;NADH dehydrogenase complex (quinone);5.2180710653682e-11!GO:0045271;respiratory chain complex I;5.2180710653682e-11!GO:0005747;mitochondrial respiratory chain complex I;5.2180710653682e-11!GO:0006732;coenzyme metabolic process;5.51345668564676e-11!GO:0019787;small conjugating protein ligase activity;7.05778773795756e-11!GO:0042254;ribosome biogenesis and assembly;7.26062432189008e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.34292253828847e-11!GO:0006333;chromatin assembly or disassembly;7.96199110200945e-11!GO:0009056;catabolic process;8.75600557486841e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.45714341837374e-10!GO:0005643;nuclear pore;1.49894771357811e-10!GO:0008639;small protein conjugating enzyme activity;2.33884304185964e-10!GO:0031323;regulation of cellular metabolic process;2.66173125971231e-10!GO:0006366;transcription from RNA polymerase II promoter;2.79805456668151e-10!GO:0006350;transcription;2.86785441082859e-10!GO:0004842;ubiquitin-protein ligase activity;3.18897101777953e-10!GO:0006446;regulation of translational initiation;3.623932720885e-10!GO:0065004;protein-DNA complex assembly;3.81256631485207e-10!GO:0016568;chromatin modification;3.88942587682373e-10!GO:0005761;mitochondrial ribosome;5.16405699765363e-10!GO:0000313;organellar ribosome;5.16405699765363e-10!GO:0043069;negative regulation of programmed cell death;6.15046275211908e-10!GO:0043066;negative regulation of apoptosis;8.4500294687985e-10!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;9.40496595409141e-10!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.12484050054227e-09!GO:0051028;mRNA transport;1.17983171607539e-09!GO:0006461;protein complex assembly;1.38320153569021e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.83372283427401e-09!GO:0065002;intracellular protein transport across a membrane;2.47760083348692e-09!GO:0017038;protein import;3.04419350655653e-09!GO:0016881;acid-amino acid ligase activity;3.2526347365399e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.43652824067138e-09!GO:0010468;regulation of gene expression;3.43652824067138e-09!GO:0005768;endosome;4.40728322501952e-09!GO:0044427;chromosomal part;5.01467691605927e-09!GO:0003924;GTPase activity;5.93567267793614e-09!GO:0006399;tRNA metabolic process;6.53031335787353e-09!GO:0007249;I-kappaB kinase/NF-kappaB cascade;6.65194517525838e-09!GO:0003713;transcription coactivator activity;7.48549200471157e-09!GO:0009259;ribonucleotide metabolic process;8.08343009156412e-09!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.95870205399254e-09!GO:0006888;ER to Golgi vesicle-mediated transport;1.09499299247862e-08!GO:0006916;anti-apoptosis;1.10935829408861e-08!GO:0005773;vacuole;1.10935829408861e-08!GO:0000785;chromatin;1.18619336526414e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.24122171084713e-08!GO:0022402;cell cycle process;1.28057567628051e-08!GO:0009055;electron carrier activity;1.48428584221231e-08!GO:0048475;coated membrane;1.62311596184541e-08!GO:0030117;membrane coat;1.62311596184541e-08!GO:0005783;endoplasmic reticulum;2.24793010682843e-08!GO:0030120;vesicle coat;2.36059837168419e-08!GO:0030662;coated vesicle membrane;2.36059837168419e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.50561018431876e-08!GO:0046930;pore complex;2.90891270422807e-08!GO:0030532;small nuclear ribonucleoprotein complex;3.32145970681845e-08!GO:0044432;endoplasmic reticulum part;3.42072780712641e-08!GO:0009150;purine ribonucleotide metabolic process;3.55870970068749e-08!GO:0048523;negative regulation of cellular process;3.746190618016e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.88112000784094e-08!GO:0004812;aminoacyl-tRNA ligase activity;3.88112000784094e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.88112000784094e-08!GO:0006163;purine nucleotide metabolic process;4.09804994269447e-08!GO:0015986;ATP synthesis coupled proton transport;5.0106233425268e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.0106233425268e-08!GO:0043038;amino acid activation;5.45557996118699e-08!GO:0006418;tRNA aminoacylation for protein translation;5.45557996118699e-08!GO:0043039;tRNA aminoacylation;5.45557996118699e-08!GO:0032774;RNA biosynthetic process;5.9186502250372e-08!GO:0005839;proteasome core complex (sensu Eukaryota);6.17766025518444e-08!GO:0009260;ribonucleotide biosynthetic process;6.57779268409103e-08!GO:0006351;transcription, DNA-dependent;6.68877082991291e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;7.36434903854764e-08!GO:0000323;lytic vacuole;7.88859676747854e-08!GO:0005764;lysosome;7.88859676747854e-08!GO:0043566;structure-specific DNA binding;8.63523930507955e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.06007253967544e-07!GO:0065007;biological regulation;1.24847786948704e-07!GO:0006164;purine nucleotide biosynthetic process;1.30056912948273e-07!GO:0003697;single-stranded DNA binding;1.38176364526365e-07!GO:0019829;cation-transporting ATPase activity;1.45230859697439e-07!GO:0051188;cofactor biosynthetic process;1.46256442215484e-07!GO:0051170;nuclear import;1.71343200075638e-07!GO:0005798;Golgi-associated vesicle;1.71793966718318e-07!GO:0009199;ribonucleoside triphosphate metabolic process;1.78318365590087e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.82140284018273e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.82140284018273e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.97058201903979e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.97058201903979e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.97058201903979e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.97058201903979e-07!GO:0005525;GTP binding;2.46618334963226e-07!GO:0045449;regulation of transcription;2.57461556980088e-07!GO:0016563;transcription activator activity;2.78161616029552e-07!GO:0016787;hydrolase activity;2.99719125919491e-07!GO:0000245;spliceosome assembly;3.16508331785427e-07!GO:0006364;rRNA processing;3.16656005269556e-07!GO:0007243;protein kinase cascade;3.23328310126123e-07!GO:0051168;nuclear export;3.50818524974986e-07!GO:0004298;threonine endopeptidase activity;3.59292120406797e-07!GO:0015078;hydrogen ion transmembrane transporter activity;3.86894188967799e-07!GO:0016564;transcription repressor activity;4.11540201537702e-07!GO:0009141;nucleoside triphosphate metabolic process;4.57283185492257e-07!GO:0006606;protein import into nucleus;4.87177174232685e-07!GO:0006754;ATP biosynthetic process;5.2014305679041e-07!GO:0006753;nucleoside phosphate metabolic process;5.2014305679041e-07!GO:0051726;regulation of cell cycle;5.33418341666086e-07!GO:0006334;nucleosome assembly;5.52428647904779e-07!GO:0016072;rRNA metabolic process;5.64867459375132e-07!GO:0000074;regulation of progression through cell cycle;6.17347983683049e-07!GO:0008270;zinc ion binding;6.55089559616746e-07!GO:0007264;small GTPase mediated signal transduction;6.95659157005755e-07!GO:0046034;ATP metabolic process;7.00103490506197e-07!GO:0051246;regulation of protein metabolic process;7.29688727769481e-07!GO:0031988;membrane-bound vesicle;7.29688727769481e-07!GO:0031324;negative regulation of cellular metabolic process;7.38738763976327e-07!GO:0031982;vesicle;7.74276518387352e-07!GO:0048519;negative regulation of biological process;9.04214618982357e-07!GO:0006793;phosphorus metabolic process;9.93976842670986e-07!GO:0006796;phosphate metabolic process;9.93976842670986e-07!GO:0009060;aerobic respiration;1.01764219270453e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.03221650657945e-06!GO:0031497;chromatin assembly;1.0463282814745e-06!GO:0003724;RNA helicase activity;1.07457042581999e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.1369813505545e-06!GO:0032446;protein modification by small protein conjugation;1.19732229744429e-06!GO:0007005;mitochondrion organization and biogenesis;1.38899548259265e-06!GO:0006260;DNA replication;1.4195058670563e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.50454161691235e-06!GO:0051427;hormone receptor binding;1.72073495990242e-06!GO:0019899;enzyme binding;1.74763874693639e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.98124298462682e-06!GO:0005770;late endosome;2.03841878393051e-06!GO:0003714;transcription corepressor activity;2.05379513776101e-06!GO:0009108;coenzyme biosynthetic process;2.32026687666926e-06!GO:0006752;group transfer coenzyme metabolic process;2.32811519528129e-06!GO:0045333;cellular respiration;2.82427763432797e-06!GO:0016567;protein ubiquitination;2.83534190992478e-06!GO:0006355;regulation of transcription, DNA-dependent;3.10630897184263e-06!GO:0042613;MHC class II protein complex;3.10718302717273e-06!GO:0031410;cytoplasmic vesicle;3.33035751086128e-06!GO:0044440;endosomal part;3.41276091219163e-06!GO:0010008;endosome membrane;3.41276091219163e-06!GO:0032561;guanyl ribonucleotide binding;3.42893275656693e-06!GO:0019001;guanyl nucleotide binding;3.42893275656693e-06!GO:0009892;negative regulation of metabolic process;3.78815349882109e-06!GO:0035257;nuclear hormone receptor binding;3.85974147528382e-06!GO:0016481;negative regulation of transcription;5.30113445605653e-06!GO:0005789;endoplasmic reticulum membrane;5.62752498583579e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.63487230156599e-06!GO:0002504;antigen processing and presentation of peptide or polysaccharide antigen via MHC class II;6.51148280516749e-06!GO:0007242;intracellular signaling cascade;6.94474002627691e-06!GO:0051187;cofactor catabolic process;9.33169508816186e-06!GO:0005813;centrosome;9.67495594149251e-06!GO:0045259;proton-transporting ATP synthase complex;1.01828287188558e-05!GO:0000151;ubiquitin ligase complex;1.02123027022559e-05!GO:0006099;tricarboxylic acid cycle;1.02278885614783e-05!GO:0046356;acetyl-CoA catabolic process;1.02278885614783e-05!GO:0006613;cotranslational protein targeting to membrane;1.02625150654221e-05!GO:0016779;nucleotidyltransferase activity;1.06167162610281e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.29758282947688e-05!GO:0000278;mitotic cell cycle;1.38742966025128e-05!GO:0031252;leading edge;1.41274758215619e-05!GO:0005793;ER-Golgi intermediate compartment;1.53925386085044e-05!GO:0006402;mRNA catabolic process;1.77222529566754e-05!GO:0065009;regulation of a molecular function;1.8524207607128e-05!GO:0003677;DNA binding;1.97710871726579e-05!GO:0016310;phosphorylation;2.00693672326494e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.34664832304816e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;2.48886856595524e-05!GO:0015399;primary active transmembrane transporter activity;2.48886856595524e-05!GO:0008186;RNA-dependent ATPase activity;2.84582507575057e-05!GO:0048471;perinuclear region of cytoplasm;2.97246357799739e-05!GO:0006084;acetyl-CoA metabolic process;3.22985734351268e-05!GO:0009109;coenzyme catabolic process;3.34380400636043e-05!GO:0045786;negative regulation of progression through cell cycle;3.47536248486899e-05!GO:0015630;microtubule cytoskeleton;4.10156490998987e-05!GO:0043065;positive regulation of apoptosis;4.11586027523194e-05!GO:0005815;microtubule organizing center;4.33787758450814e-05!GO:0006401;RNA catabolic process;5.09983573109242e-05!GO:0005852;eukaryotic translation initiation factor 3 complex;5.14516379214125e-05!GO:0043068;positive regulation of programmed cell death;5.39414672678932e-05!GO:0005774;vacuolar membrane;5.53260910826948e-05!GO:0051789;response to protein stimulus;5.63025997133215e-05!GO:0006986;response to unfolded protein;5.63025997133215e-05!GO:0044431;Golgi apparatus part;6.57412965472736e-05!GO:0046914;transition metal ion binding;6.76229398416883e-05!GO:0048522;positive regulation of cellular process;7.24787328045469e-05!GO:0009117;nucleotide metabolic process;7.49901110491631e-05!GO:0006917;induction of apoptosis;7.86931176958478e-05!GO:0004004;ATP-dependent RNA helicase activity;9.19047554582659e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;9.56561733567636e-05!GO:0006612;protein targeting to membrane;9.58089239465934e-05!GO:0003682;chromatin binding;0.000117117335439655!GO:0030658;transport vesicle membrane;0.000118561500390668!GO:0012502;induction of programmed cell death;0.000119853698801201!GO:0006891;intra-Golgi vesicle-mediated transport;0.00016009986765169!GO:0005885;Arp2/3 protein complex;0.000164954144610894!GO:0005765;lysosomal membrane;0.000168064914081385!GO:0007265;Ras protein signal transduction;0.000171631784844006!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000178603416090029!GO:0030521;androgen receptor signaling pathway;0.000182471602449179!GO:0003729;mRNA binding;0.000200603235515048!GO:0044437;vacuolar part;0.000214302521557992!GO:0043021;ribonucleoprotein binding;0.000218115105702019!GO:0045892;negative regulation of transcription, DNA-dependent;0.00022454487891118!GO:0043623;cellular protein complex assembly;0.000245901475445468!GO:0016197;endosome transport;0.00025137020773898!GO:0048468;cell development;0.000323062073161395!GO:0009967;positive regulation of signal transduction;0.000326191802903785!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000330706359704934!GO:0022403;cell cycle phase;0.000398745348780551!GO:0016363;nuclear matrix;0.000403684484052174!GO:0031072;heat shock protein binding;0.000418057027811761!GO:0045045;secretory pathway;0.000427569188330834!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000428158156928798!GO:0005667;transcription factor complex;0.000455972829596234!GO:0030660;Golgi-associated vesicle membrane;0.0004839455227622!GO:0006352;transcription initiation;0.000544839892862446!GO:0046966;thyroid hormone receptor binding;0.000557164337853135!GO:0003690;double-stranded DNA binding;0.000557234675880083!GO:0005048;signal sequence binding;0.00058642281372212!GO:0006310;DNA recombination;0.000594542567733996!GO:0003899;DNA-directed RNA polymerase activity;0.000610024749977795!GO:0006302;double-strand break repair;0.000630572425982557!GO:0012506;vesicle membrane;0.000631234436493073!GO:0030659;cytoplasmic vesicle membrane;0.000643934243073508!GO:0006405;RNA export from nucleus;0.00064661309694717!GO:0016251;general RNA polymerase II transcription factor activity;0.000692485356843627!GO:0030133;transport vesicle;0.000722388023125423!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000732696396123808!GO:0008234;cysteine-type peptidase activity;0.000738184588454049!GO:0030518;steroid hormone receptor signaling pathway;0.000761082719901826!GO:0016859;cis-trans isomerase activity;0.000767298892674635!GO:0030118;clathrin coat;0.000793638863624708!GO:0043492;ATPase activity, coupled to movement of substances;0.000793638863624708!GO:0032395;MHC class II receptor activity;0.000800457025123233!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000823501953720116!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00087834281525366!GO:0006261;DNA-dependent DNA replication;0.000879941253998064!GO:0008637;apoptotic mitochondrial changes;0.000934502327057005!GO:0031902;late endosome membrane;0.000937477295486652!GO:0001726;ruffle;0.000974518367346619!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00103108703442636!GO:0035258;steroid hormone receptor binding;0.001032917998375!GO:0016740;transferase activity;0.0010337080038345!GO:0030134;ER to Golgi transport vesicle;0.00104714933380875!GO:0005769;early endosome;0.00106011059287812!GO:0008654;phospholipid biosynthetic process;0.00106981882021954!GO:0009165;nucleotide biosynthetic process;0.00108062785061684!GO:0006417;regulation of translation;0.00108062785061684!GO:0008320;protein transmembrane transporter activity;0.0010841339656642!GO:0006383;transcription from RNA polymerase III promoter;0.00108766937648034!GO:0006626;protein targeting to mitochondrion;0.0011100558265511!GO:0015631;tubulin binding;0.00111574760502297!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00113337287486848!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00113337287486848!GO:0000786;nucleosome;0.0011585791300942!GO:0006091;generation of precursor metabolites and energy;0.00124894370599356!GO:0007050;cell cycle arrest;0.00125538744536164!GO:0003678;DNA helicase activity;0.00126106665783497!GO:0008094;DNA-dependent ATPase activity;0.0012752628320755!GO:0000087;M phase of mitotic cell cycle;0.00129343110335351!GO:0022406;membrane docking;0.00130135884559468!GO:0048278;vesicle docking;0.00130135884559468!GO:0032940;secretion by cell;0.00132574355052754!GO:0051252;regulation of RNA metabolic process;0.00135706518437552!GO:0048500;signal recognition particle;0.00144457743293311!GO:0005684;U2-dependent spliceosome;0.00144999416617666!GO:0007067;mitosis;0.001499378108126!GO:0051087;chaperone binding;0.00151102392668179!GO:0043087;regulation of GTPase activity;0.00154388085062657!GO:0006818;hydrogen transport;0.00154388085062657!GO:0000209;protein polyubiquitination;0.00156956069205867!GO:0005637;nuclear inner membrane;0.00160467633817557!GO:0044433;cytoplasmic vesicle part;0.00164353282208216!GO:0008632;apoptotic program;0.00174105848323703!GO:0015992;proton transport;0.00178999098249886!GO:0016853;isomerase activity;0.00185095833994022!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00187347187936027!GO:0030663;COPI coated vesicle membrane;0.00191141347351321!GO:0030126;COPI vesicle coat;0.00191141347351321!GO:0030137;COPI-coated vesicle;0.00199229226675571!GO:0006904;vesicle docking during exocytosis;0.00202164234671457!GO:0051301;cell division;0.00212385503813291!GO:0006289;nucleotide-excision repair;0.00217139422486159!GO:0030127;COPII vesicle coat;0.00217139422486159!GO:0012507;ER to Golgi transport vesicle membrane;0.00217139422486159!GO:0005741;mitochondrial outer membrane;0.00226050024411954!GO:0006338;chromatin remodeling;0.0023002607924486!GO:0008139;nuclear localization sequence binding;0.00234294594831901!GO:0030867;rough endoplasmic reticulum membrane;0.00238370411251938!GO:0007034;vacuolar transport;0.00241600897436416!GO:0005083;small GTPase regulator activity;0.00246819123271742!GO:0050790;regulation of catalytic activity;0.00253673027256833!GO:0005762;mitochondrial large ribosomal subunit;0.00265553396933922!GO:0000315;organellar large ribosomal subunit;0.00265553396933922!GO:0030384;phosphoinositide metabolic process;0.00299052036582627!GO:0015980;energy derivation by oxidation of organic compounds;0.0030569851090585!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00305870128570583!GO:0045047;protein targeting to ER;0.00305870128570583!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00307047642476614!GO:0006414;translational elongation;0.00309654503745788!GO:0051052;regulation of DNA metabolic process;0.00326985721589794!GO:0045454;cell redox homeostasis;0.00328943331676026!GO:0042802;identical protein binding;0.00333168963025228!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00334440866145827!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00334440866145827!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00334440866145827!GO:0030036;actin cytoskeleton organization and biogenesis;0.00347958112476041!GO:0003711;transcription elongation regulator activity;0.00373393503977956!GO:0043681;protein import into mitochondrion;0.00375602634126098!GO:0006611;protein export from nucleus;0.00384464432098408!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00384744881841792!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00402630831017507!GO:0031968;organelle outer membrane;0.00404052728410207!GO:0042611;MHC protein complex;0.00446892236234746!GO:0008312;7S RNA binding;0.00448965241520084!GO:0030880;RNA polymerase complex;0.00459837751944563!GO:0000139;Golgi membrane;0.00460013149340103!GO:0000059;protein import into nucleus, docking;0.00474660291051261!GO:0007021;tubulin folding;0.0047703683505196!GO:0048518;positive regulation of biological process;0.0047703683505196!GO:0046483;heterocycle metabolic process;0.00509086360436358!GO:0007006;mitochondrial membrane organization and biogenesis;0.00509795540002022!GO:0006607;NLS-bearing substrate import into nucleus;0.00518678911374114!GO:0016126;sterol biosynthetic process;0.00525883801182709!GO:0005099;Ras GTPase activator activity;0.00527375772019369!GO:0019867;outer membrane;0.00539823258326181!GO:0031326;regulation of cellular biosynthetic process;0.00574474540680532!GO:0046489;phosphoinositide biosynthetic process;0.00585630699124841!GO:0005788;endoplasmic reticulum lumen;0.00590172676934125!GO:0016272;prefoldin complex;0.00600610308336502!GO:0044452;nucleolar part;0.00602876617799434!GO:0004674;protein serine/threonine kinase activity;0.00603376167211783!GO:0031124;mRNA 3'-end processing;0.00603376167211783!GO:0004003;ATP-dependent DNA helicase activity;0.00611326449771888!GO:0006650;glycerophospholipid metabolic process;0.00622829627286271!GO:0030029;actin filament-based process;0.00648097443390484!GO:0030522;intracellular receptor-mediated signaling pathway;0.00650694068046095!GO:0006839;mitochondrial transport;0.00690939394093788!GO:0022884;macromolecule transmembrane transporter activity;0.0069553489726187!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0069553489726187!GO:0051329;interphase of mitotic cell cycle;0.00698566893704363!GO:0050681;androgen receptor binding;0.00699603074786058!GO:0004843;ubiquitin-specific protease activity;0.00700490065435538!GO:0000279;M phase;0.00706111017086287!GO:0019783;small conjugating protein-specific protease activity;0.0072769539931515!GO:0016044;membrane organization and biogenesis;0.00741376131135739!GO:0051325;interphase;0.00769059524328865!GO:0008033;tRNA processing;0.00769059524328865!GO:0006376;mRNA splice site selection;0.00783882840852998!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00783882840852998!GO:0030125;clathrin vesicle coat;0.00783882840852998!GO:0030665;clathrin coated vesicle membrane;0.00783882840852998!GO:0051920;peroxiredoxin activity;0.00788265349496032!GO:0030119;AP-type membrane coat adaptor complex;0.0079791710608438!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00798727893363265!GO:0030695;GTPase regulator activity;0.00798727893363265!GO:0016491;oxidoreductase activity;0.00801636408091691!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00802239991767279!GO:0000428;DNA-directed RNA polymerase complex;0.00802239991767279!GO:0005657;replication fork;0.0081945143821851!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00843462324231244!GO:0008287;protein serine/threonine phosphatase complex;0.00851104429821078!GO:0016584;nucleosome positioning;0.00894675273469365!GO:0008092;cytoskeletal protein binding;0.00902304325919793!GO:0006007;glucose catabolic process;0.00928139578786683!GO:0000314;organellar small ribosomal subunit;0.00938790428648554!GO:0005763;mitochondrial small ribosomal subunit;0.00938790428648554!GO:0004221;ubiquitin thiolesterase activity;0.00941381621934538!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00953912270630896!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00966838915073323!GO:0048487;beta-tubulin binding;0.00996671935199741!GO:0046365;monosaccharide catabolic process;0.00998644674097965!GO:0031123;RNA 3'-end processing;0.010197173991674!GO:0030258;lipid modification;0.0104567619656399!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0104740401220182!GO:0030131;clathrin adaptor complex;0.0104972865108784!GO:0045893;positive regulation of transcription, DNA-dependent;0.0106877665298914!GO:0000119;mediator complex;0.0109359722714186!GO:0007041;lysosomal transport;0.0109612488104341!GO:0032318;regulation of Ras GTPase activity;0.0111480005732621!GO:0050811;GABA receptor binding;0.0114273385342309!GO:0004527;exonuclease activity;0.0115398529904476!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0115503875276945!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0115503875276945!GO:0001836;release of cytochrome c from mitochondria;0.0117533968584908!GO:0045941;positive regulation of transcription;0.0119085733422442!GO:0009615;response to virus;0.0123437407250647!GO:0008047;enzyme activator activity;0.0125864207961388!GO:0008022;protein C-terminus binding;0.0127143833463008!GO:0030041;actin filament polymerization;0.0127199190844922!GO:0051336;regulation of hydrolase activity;0.0127668847632937!GO:0046474;glycerophospholipid biosynthetic process;0.0137857073610849!GO:0005791;rough endoplasmic reticulum;0.0138219983335098!GO:0047485;protein N-terminus binding;0.0138220176063772!GO:0030433;ER-associated protein catabolic process;0.0143578712082989!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0143578712082989!GO:0046164;alcohol catabolic process;0.0144963843270094!GO:0051059;NF-kappaB binding;0.014678002435432!GO:0009966;regulation of signal transduction;0.0148257924136544!GO:0043488;regulation of mRNA stability;0.0150357757243762!GO:0043487;regulation of RNA stability;0.0150357757243762!GO:0019320;hexose catabolic process;0.0153567477179036!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.015433909615576!GO:0000049;tRNA binding;0.0157262228915046!GO:0019882;antigen processing and presentation;0.0160075165363529!GO:0045767;regulation of anti-apoptosis;0.0160912850692984!GO:0009889;regulation of biosynthetic process;0.0161138963295719!GO:0051101;regulation of DNA binding;0.0162317787494903!GO:0022890;inorganic cation transmembrane transporter activity;0.0162667288904016!GO:0001891;phagocytic cup;0.0163155552258735!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0168504192645158!GO:0006406;mRNA export from nucleus;0.0168870310739496!GO:0005905;coated pit;0.0170480394945611!GO:0006740;NADPH regeneration;0.0172562673965188!GO:0006098;pentose-phosphate shunt;0.0172562673965188!GO:0008250;oligosaccharyl transferase complex;0.0176663464211559!GO:0030140;trans-Golgi network transport vesicle;0.0177454235977321!GO:0005096;GTPase activator activity;0.0181563950821553!GO:0006950;response to stress;0.0183620056879643!GO:0005869;dynactin complex;0.0184306920504806!GO:0006672;ceramide metabolic process;0.0195262933094416!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0197792056724195!GO:0051090;regulation of transcription factor activity;0.0198523928339752!GO:0016311;dephosphorylation;0.020597720523585!GO:0000075;cell cycle checkpoint;0.0206604335169915!GO:0051098;regulation of binding;0.0207309087318059!GO:0040029;regulation of gene expression, epigenetic;0.0217845465211006!GO:0016407;acetyltransferase activity;0.0221636328419747!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0225133154427438!GO:0006695;cholesterol biosynthetic process;0.0227865581077173!GO:0005819;spindle;0.0228968467614856!GO:0004576;oligosaccharyl transferase activity;0.0228968467614856!GO:0033116;ER-Golgi intermediate compartment membrane;0.0230643173910117!GO:0006635;fatty acid beta-oxidation;0.0230714324836748!GO:0005669;transcription factor TFIID complex;0.0230714324836748!GO:0042809;vitamin D receptor binding;0.0241506742769669!GO:0000726;non-recombinational repair;0.0242270254943819!GO:0032200;telomere organization and biogenesis;0.0242951462947539!GO:0000723;telomere maintenance;0.0242951462947539!GO:0000776;kinetochore;0.0250013441077946!GO:0003725;double-stranded RNA binding;0.0250747654713754!GO:0031529;ruffle organization and biogenesis;0.0251529439798652!GO:0045736;negative regulation of cyclin-dependent protein kinase activity;0.0251529439798652!GO:0008017;microtubule binding;0.0253996279526076!GO:0030176;integral to endoplasmic reticulum membrane;0.0256787948299545!GO:0016790;thiolester hydrolase activity;0.025769690497826!GO:0000118;histone deacetylase complex;0.025769690497826!GO:0003684;damaged DNA binding;0.025769690497826!GO:0006378;mRNA polyadenylation;0.0257962288159954!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0260609044602374!GO:0044262;cellular carbohydrate metabolic process;0.0262042151616347!GO:0042440;pigment metabolic process;0.0262622978703768!GO:0016601;Rac protein signal transduction;0.0262622978703768!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0262976255445405!GO:0015002;heme-copper terminal oxidase activity;0.0262976255445405!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0262976255445405!GO:0004129;cytochrome-c oxidase activity;0.0262976255445405!GO:0031625;ubiquitin protein ligase binding;0.0265022539825608!GO:0007010;cytoskeleton organization and biogenesis;0.0265798332964962!GO:0004300;enoyl-CoA hydratase activity;0.0265892403830911!GO:0003746;translation elongation factor activity;0.0265892403830911!GO:0043022;ribosome binding;0.0269069973303998!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0269586193265629!GO:0050662;coenzyme binding;0.0270962683548032!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0273616905878254!GO:0046467;membrane lipid biosynthetic process;0.0282363584699715!GO:0004177;aminopeptidase activity;0.0290644106726213!GO:0006769;nicotinamide metabolic process;0.0290920446481!GO:0008629;induction of apoptosis by intracellular signals;0.0293557770230033!GO:0046983;protein dimerization activity;0.0299646763300701!GO:0043433;negative regulation of transcription factor activity;0.030128861911142!GO:0000792;heterochromatin;0.0302452184676064!GO:0046578;regulation of Ras protein signal transduction;0.0302452184676064!GO:0033673;negative regulation of kinase activity;0.0308039665969524!GO:0006469;negative regulation of protein kinase activity;0.0308039665969524!GO:0043130;ubiquitin binding;0.0313595107051896!GO:0032182;small conjugating protein binding;0.0313595107051896!GO:0051539;4 iron, 4 sulfur cluster binding;0.0317889985631411!GO:0005832;chaperonin-containing T-complex;0.0317889985631411!GO:0019843;rRNA binding;0.0317889985631411!GO:0051540;metal cluster binding;0.0324024545294187!GO:0051536;iron-sulfur cluster binding;0.0324024545294187!GO:0006778;porphyrin metabolic process;0.0326161039049047!GO:0033013;tetrapyrrole metabolic process;0.0326161039049047!GO:0000152;nuclear ubiquitin ligase complex;0.0333195854886583!GO:0051287;NAD binding;0.0334002866635277!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0334668312030545!GO:0046519;sphingoid metabolic process;0.0337226657986864!GO:0043621;protein self-association;0.0338183300833176!GO:0008538;proteasome activator activity;0.0338183300833176!GO:0004518;nuclease activity;0.0338183300833176!GO:0044438;microbody part;0.0338183300833176!GO:0044439;peroxisomal part;0.0338183300833176!GO:0018196;peptidyl-asparagine modification;0.0341027017509971!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0341027017509971!GO:0019318;hexose metabolic process;0.0349482930183238!GO:0031371;ubiquitin conjugating enzyme complex;0.0350398194008469!GO:0019752;carboxylic acid metabolic process;0.0351538496805473!GO:0003702;RNA polymerase II transcription factor activity;0.03568174701236!GO:0042585;germinal vesicle;0.0360578354892427!GO:0008180;signalosome;0.0360578354892427!GO:0008276;protein methyltransferase activity;0.0360578354892427!GO:0019362;pyridine nucleotide metabolic process;0.036401015468779!GO:0005874;microtubule;0.0374294821738437!GO:0007052;mitotic spindle organization and biogenesis;0.0375930464820781!GO:0005777;peroxisome;0.0385596337295081!GO:0042579;microbody;0.0385596337295081!GO:0046822;regulation of nucleocytoplasmic transport;0.0387406570712583!GO:0006892;post-Golgi vesicle-mediated transport;0.0387406570712583!GO:0006082;organic acid metabolic process;0.038799512995907!GO:0005784;translocon complex;0.0389834287572633!GO:0005996;monosaccharide metabolic process;0.0396118826077681!GO:0006739;NADP metabolic process;0.0400391202992268!GO:0006661;phosphatidylinositol biosynthetic process;0.04039767118!GO:0018193;peptidyl-amino acid modification;0.0407326707891861!GO:0006516;glycoprotein catabolic process;0.0407326707891861!GO:0030027;lamellipodium;0.0407330434099409!GO:0030130;clathrin coat of trans-Golgi network vesicle;0.041130994609075!GO:0012510;trans-Golgi network transport vesicle membrane;0.041130994609075!GO:0019377;glycolipid catabolic process;0.0417621452874025!GO:0042168;heme metabolic process;0.0418555097789865!GO:0051348;negative regulation of transferase activity;0.0420431507413061!GO:0000738;DNA catabolic process, exonucleolytic;0.0420835629995852!GO:0007004;telomere maintenance via telomerase;0.0423664549704078!GO:0043414;biopolymer methylation;0.0428251550976932!GO:0004860;protein kinase inhibitor activity;0.0434094650426987!GO:0007040;lysosome organization and biogenesis;0.0437329887592719!GO:0032508;DNA duplex unwinding;0.0446914194341518!GO:0032392;DNA geometric change;0.0446914194341518!GO:0017091;AU-rich element binding;0.0454289801049624!GO:0050779;RNA destabilization;0.0454289801049624!GO:0000289;poly(A) tail shortening;0.0454289801049624!GO:0007025;beta-tubulin folding;0.0461945699358796!GO:0045815;positive regulation of gene expression, epigenetic;0.0462657910962659!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0463484193154937!GO:0030132;clathrin coat of coated pit;0.0465884770691957!GO:0009112;nucleobase metabolic process;0.0466877500913425!GO:0004402;histone acetyltransferase activity;0.0469124396661001!GO:0004468;lysine N-acetyltransferase activity;0.0469124396661001!GO:0000339;RNA cap binding;0.0471297686118776!GO:0000018;regulation of DNA recombination;0.0483521852224256!GO:0042026;protein refolding;0.048639515841053!GO:0031903;microbody membrane;0.0493945949954925!GO:0005778;peroxisomal membrane;0.0493945949954925!GO:0008168;methyltransferase activity;0.0497283105564795 | |||
|sample_id=11901 | |sample_id=11901 | ||
|sample_note= | |sample_note= | ||
|sample_sex= | |sample_sex= | ||
|sample_species= | |sample_species=Human (Homo sapiens) | ||
|sample_strain= | |sample_strain= | ||
|sample_tissue= | |sample_tissue= | ||
|top_motifs=HSF1,2:2.66378505338;TLX2:2.04068133901;FOX{F1,F2,J1}:1.74879332592;NFKB1_REL_RELA:1.3468215698;PAX6:1.27870594624;HMX1:1.10169881176;STAT1,3:1.07380031586;FOXP3:1.03241005614;SREBF1,2:0.910338276538;FOXA2:0.853780168522;SPZ1:0.834033668722;FOXN1:0.797433172016;PDX1:0.740234603284;RXRA_VDR{dimer}:0.739962139759;ATF5_CREB3:0.731665822515;CDX1,2,4:0.7182668472;ARID5B:0.71164881984;RUNX1..3:0.702134795716;ATF2:0.698109748093;IRF1,2:0.687607153899;ESRRA:0.684380176748;ZBTB16:0.612993243127;NFIX:0.612957937399;OCT4_SOX2{dimer}:0.61191459706;AHR_ARNT_ARNT2:0.588188204661;HAND1,2:0.564933238998;NANOG{mouse}:0.563579512432;SPI1:0.490390101174;EVI1:0.486051528303;NKX6-1,2:0.461058796307;ELF1,2,4:0.457321165084;RFX2..5_RFXANK_RFXAP:0.417249112056;RORA:0.381245126748;SPIB:0.339557808932;YY1:0.338659738293;STAT5{A,B}:0.332896669443;HNF4A_NR2F1,2:0.327810557267;POU3F1..4:0.321547955746;FOX{D1,D2}:0.316263612588;PAX2:0.316082189992;CUX2:0.307104890901;POU1F1:0.287427548275;NFY{A,B,C}:0.283246330359;BPTF:0.263860558297;IKZF2:0.253059520549;HMGA1,2:0.241898081893;NKX3-1:0.230348073783;PRRX1,2:0.230266484553;NR5A1,2:0.223081365537;IRF7:0.212554249792;NKX2-2,8:0.207317641716;MYB:0.195836375939;ALX4:0.193429746484;FOSL2:0.18660233055;NKX3-2:0.141907478522;NFE2L1:0.13979593738;ETS1,2:0.130483198914;TGIF1:0.102183243633;HOXA9_MEIS1:0.0962809994332;GLI1..3:0.0941416721398;SRF:0.0937006224115;EP300:0.0672279472982;SOX2:0.0653223384772;FOXQ1:0.0652945335624;LMO2:0.0574500973133;JUN:0.0519368578182;FOXM1:0.050078760795;GATA6:0.0403906932719;CRX:0.0394646435114;LHX3,4:0.0377024929945;SNAI1..3:0.0267650238029;NR6A1:0.0130404768602;POU2F1..3:0.00855874266662;MYFfamily:-0.00942820251076;NKX2-3_NKX2-5:-0.0177179210136;NFE2L2:-0.0281846734225;ATF4:-0.0341985978917;HOX{A6,A7,B6,B7}:-0.0469393696911;ALX1:-0.0558419072119;CREB1:-0.0806628941624;STAT2,4,6:-0.0889824735466;NFE2:-0.0899565381375;ZEB1:-0.0906888469683;BACH2:-0.103258206508;NRF1:-0.10565576395;DMAP1_NCOR{1,2}_SMARC:-0.124620306732;FOXO1,3,4:-0.133616739319;ESR1:-0.135607599112;PBX1:-0.137397295893;TFCP2:-0.14846712702;HES1:-0.171663902732;ZFP161:-0.18739243578;ZNF148:-0.200723653628;TOPORS:-0.205953787688;SMAD1..7,9:-0.210950001181;PITX1..3:-0.220883466782;MYOD1:-0.233455212723;FOXP1:-0.23408295752;ATF6:-0.242007374289;SOX5:-0.243500899111;VSX1,2:-0.245187669971;HNF1A:-0.261770965395;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.265125253975;HIF1A:-0.290888633752;MAFB:-0.304203986415;NANOG:-0.308858653835;ELK1,4_GABP{A,B1}:-0.310777078327;TAL1_TCF{3,4,12}:-0.330568899059;FOS_FOS{B,L1}_JUN{B,D}:-0.333723809491;NFATC1..3:-0.339288010466;MAZ:-0.353517706386;SP1:-0.359808561891;TBP:-0.359879735741;AIRE:-0.369961497459;NFIL3:-0.375051437986;PAX8:-0.388433030941;E2F1..5:-0.392769068406;HOX{A4,D4}:-0.415261681361;GZF1:-0.415658157242;UFEwm:-0.418243326726;SOX17:-0.422006530828;ZNF238:-0.437896483355;PAX4:-0.442438714629;GFI1B:-0.443484277663;ZNF143:-0.45688201925;AR:-0.473947329721;MEF2{A,B,C,D}:-0.479933916879;SOX{8,9,10}:-0.512192894495;TBX4,5:-0.526692367615;GFI1:-0.543964902722;HLF:-0.585163962823;GATA4:-0.585429561934;ZIC1..3:-0.589775784782;LEF1_TCF7_TCF7L1,2:-0.592218127387;NR3C1:-0.636465296168;MYBL2:-0.638023405781;EBF1:-0.64708052913;MED-1{core}:-0.679870857101;ONECUT1,2:-0.690609056239;CEBPA,B_DDIT3:-0.703300882835;POU5F1:-0.709103498271;PPARG:-0.729306380103;RFX1:-0.73152424105;PAX3,7:-0.742947349403;BREu{core}:-0.747073243379;NR1H4:-0.771752240875;MTE{core}:-0.775339384286;TP53:-0.794700763016;XBP1:-0.815990615494;MZF1:-0.822464542015;EN1,2:-0.832833385508;NHLH1,2:-0.836917587993;KLF4:-0.849027364831;HBP1_HMGB_SSRP1_UBTF:-0.849642392006;RREB1:-0.85685138754;HOX{A5,B5}:-0.858677274187;EGR1..3:-0.859716813221;TLX1..3_NFIC{dimer}:-0.877139171365;TFAP4:-0.894220287831;MTF1:-0.932721548123;NKX2-1,4:-0.937192818519;TEAD1:-0.954275214106;IKZF1:-0.963556973073;ZBTB6:-1.00350541116;GTF2I:-1.01604425308;PRDM1:-1.03849479907;PAX5:-1.03932647576;FOX{I1,J2}:-1.05097194419;ZNF384:-1.09317390619;TFAP2{A,C}:-1.09518619101;PATZ1:-1.15886299729;XCPE1{core}:-1.16026600057;TFDP1:-1.1795531902;GCM1,2:-1.28702595043;REST:-1.30865334479;bHLH_family:-1.31110515862;CDC5L:-1.3303971566;GTF2A1,2:-1.34429021265;RBPJ:-1.35278930279;POU6F1:-1.41295506097;TEF:-1.45792402347;PAX1,9:-1.4626878608;TFAP2B:-1.47120712735;FOXD3:-1.49450986985;HIC1:-1.49491218675;T:-1.71787859518;ZNF423:-1.74657513244;ADNP_IRX_SIX_ZHX:-1.87859999256;FOXL1:-1.88453633075;DBP:-1.9552521099;RXR{A,B,G}:-2.02817866209;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-2.1452064383 | |top_motifs=HSF1,2:2.66378505338;TLX2:2.04068133901;FOX{F1,F2,J1}:1.74879332592;NFKB1_REL_RELA:1.3468215698;PAX6:1.27870594624;HMX1:1.10169881176;STAT1,3:1.07380031586;FOXP3:1.03241005614;SREBF1,2:0.910338276538;FOXA2:0.853780168522;SPZ1:0.834033668722;FOXN1:0.797433172016;PDX1:0.740234603284;RXRA_VDR{dimer}:0.739962139759;ATF5_CREB3:0.731665822515;CDX1,2,4:0.7182668472;ARID5B:0.71164881984;RUNX1..3:0.702134795716;ATF2:0.698109748093;IRF1,2:0.687607153899;ESRRA:0.684380176748;ZBTB16:0.612993243127;NFIX:0.612957937399;OCT4_SOX2{dimer}:0.61191459706;AHR_ARNT_ARNT2:0.588188204661;HAND1,2:0.564933238998;NANOG{mouse}:0.563579512432;SPI1:0.490390101174;EVI1:0.486051528303;NKX6-1,2:0.461058796307;ELF1,2,4:0.457321165084;RFX2..5_RFXANK_RFXAP:0.417249112056;RORA:0.381245126748;SPIB:0.339557808932;YY1:0.338659738293;STAT5{A,B}:0.332896669443;HNF4A_NR2F1,2:0.327810557267;POU3F1..4:0.321547955746;FOX{D1,D2}:0.316263612588;PAX2:0.316082189992;CUX2:0.307104890901;POU1F1:0.287427548275;NFY{A,B,C}:0.283246330359;BPTF:0.263860558297;IKZF2:0.253059520549;HMGA1,2:0.241898081893;NKX3-1:0.230348073783;PRRX1,2:0.230266484553;NR5A1,2:0.223081365537;IRF7:0.212554249792;NKX2-2,8:0.207317641716;MYB:0.195836375939;ALX4:0.193429746484;FOSL2:0.18660233055;NKX3-2:0.141907478522;NFE2L1:0.13979593738;ETS1,2:0.130483198914;TGIF1:0.102183243633;HOXA9_MEIS1:0.0962809994332;GLI1..3:0.0941416721398;SRF:0.0937006224115;EP300:0.0672279472982;SOX2:0.0653223384772;FOXQ1:0.0652945335624;LMO2:0.0574500973133;JUN:0.0519368578182;FOXM1:0.050078760795;GATA6:0.0403906932719;CRX:0.0394646435114;LHX3,4:0.0377024929945;SNAI1..3:0.0267650238029;NR6A1:0.0130404768602;POU2F1..3:0.00855874266662;MYFfamily:-0.00942820251076;NKX2-3_NKX2-5:-0.0177179210136;NFE2L2:-0.0281846734225;ATF4:-0.0341985978917;HOX{A6,A7,B6,B7}:-0.0469393696911;ALX1:-0.0558419072119;CREB1:-0.0806628941624;STAT2,4,6:-0.0889824735466;NFE2:-0.0899565381375;ZEB1:-0.0906888469683;BACH2:-0.103258206508;NRF1:-0.10565576395;DMAP1_NCOR{1,2}_SMARC:-0.124620306732;FOXO1,3,4:-0.133616739319;ESR1:-0.135607599112;PBX1:-0.137397295893;TFCP2:-0.14846712702;HES1:-0.171663902732;ZFP161:-0.18739243578;ZNF148:-0.200723653628;TOPORS:-0.205953787688;SMAD1..7,9:-0.210950001181;PITX1..3:-0.220883466782;MYOD1:-0.233455212723;FOXP1:-0.23408295752;ATF6:-0.242007374289;SOX5:-0.243500899111;VSX1,2:-0.245187669971;HNF1A:-0.261770965395;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.265125253975;HIF1A:-0.290888633752;MAFB:-0.304203986415;NANOG:-0.308858653835;ELK1,4_GABP{A,B1}:-0.310777078327;TAL1_TCF{3,4,12}:-0.330568899059;FOS_FOS{B,L1}_JUN{B,D}:-0.333723809491;NFATC1..3:-0.339288010466;MAZ:-0.353517706386;SP1:-0.359808561891;TBP:-0.359879735741;AIRE:-0.369961497459;NFIL3:-0.375051437986;PAX8:-0.388433030941;E2F1..5:-0.392769068406;HOX{A4,D4}:-0.415261681361;GZF1:-0.415658157242;UFEwm:-0.418243326726;SOX17:-0.422006530828;ZNF238:-0.437896483355;PAX4:-0.442438714629;GFI1B:-0.443484277663;ZNF143:-0.45688201925;AR:-0.473947329721;MEF2{A,B,C,D}:-0.479933916879;SOX{8,9,10}:-0.512192894495;TBX4,5:-0.526692367615;GFI1:-0.543964902722;HLF:-0.585163962823;GATA4:-0.585429561934;ZIC1..3:-0.589775784782;LEF1_TCF7_TCF7L1,2:-0.592218127387;NR3C1:-0.636465296168;MYBL2:-0.638023405781;EBF1:-0.64708052913;MED-1{core}:-0.679870857101;ONECUT1,2:-0.690609056239;CEBPA,B_DDIT3:-0.703300882835;POU5F1:-0.709103498271;PPARG:-0.729306380103;RFX1:-0.73152424105;PAX3,7:-0.742947349403;BREu{core}:-0.747073243379;NR1H4:-0.771752240875;MTE{core}:-0.775339384286;TP53:-0.794700763016;XBP1:-0.815990615494;MZF1:-0.822464542015;EN1,2:-0.832833385508;NHLH1,2:-0.836917587993;KLF4:-0.849027364831;HBP1_HMGB_SSRP1_UBTF:-0.849642392006;RREB1:-0.85685138754;HOX{A5,B5}:-0.858677274187;EGR1..3:-0.859716813221;TLX1..3_NFIC{dimer}:-0.877139171365;TFAP4:-0.894220287831;MTF1:-0.932721548123;NKX2-1,4:-0.937192818519;TEAD1:-0.954275214106;IKZF1:-0.963556973073;ZBTB6:-1.00350541116;GTF2I:-1.01604425308;PRDM1:-1.03849479907;PAX5:-1.03932647576;FOX{I1,J2}:-1.05097194419;ZNF384:-1.09317390619;TFAP2{A,C}:-1.09518619101;PATZ1:-1.15886299729;XCPE1{core}:-1.16026600057;TFDP1:-1.1795531902;GCM1,2:-1.28702595043;REST:-1.30865334479;bHLH_family:-1.31110515862;CDC5L:-1.3303971566;GTF2A1,2:-1.34429021265;RBPJ:-1.35278930279;POU6F1:-1.41295506097;TEF:-1.45792402347;PAX1,9:-1.4626878608;TFAP2B:-1.47120712735;FOXD3:-1.49450986985;HIC1:-1.49491218675;T:-1.71787859518;ZNF423:-1.74657513244;ADNP_IRX_SIX_ZHX:-1.87859999256;FOXL1:-1.88453633075;DBP:-1.9552521099;RXR{A,B,G}:-2.02817866209;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-2.1452064383 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11901-125F2;search_select_hide=table117:FF:11901-125F2 | |||
}} | }} | ||
Latest revision as of 18:27, 4 June 2020
| Name: | migratory langerhans cells, donor1 |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13535 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13535
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13535
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0173 |
| 10 | 10 | 0.0265 |
| 100 | 100 | 0.944 |
| 101 | 101 | 0.239 |
| 102 | 102 | 0.492 |
| 103 | 103 | 0.0287 |
| 104 | 104 | 0.7 |
| 105 | 105 | 0.121 |
| 106 | 106 | 0.102 |
| 107 | 107 | 0.919 |
| 108 | 108 | 0.643 |
| 109 | 109 | 0.0665 |
| 11 | 11 | 0.173 |
| 110 | 110 | 0.274 |
| 111 | 111 | 0.0425 |
| 112 | 112 | 0.0311 |
| 113 | 113 | 0.859 |
| 114 | 114 | 0.00846 |
| 115 | 115 | 0.267 |
| 116 | 116 | 0.54 |
| 117 | 117 | 0.0158 |
| 118 | 118 | 0.0695 |
| 119 | 119 | 0.0161 |
| 12 | 12 | 0.631 |
| 120 | 120 | 0.707 |
| 121 | 121 | 0.884 |
| 122 | 122 | 0.842 |
| 123 | 123 | 0.666 |
| 124 | 124 | 0.182 |
| 125 | 125 | 0.901 |
| 126 | 126 | 0.049 |
| 127 | 127 | 0.087 |
| 128 | 128 | 0.0625 |
| 129 | 129 | 0.253 |
| 13 | 13 | 0.0264 |
| 130 | 130 | 0.85 |
| 131 | 131 | 0.472 |
| 132 | 132 | 0.385 |
| 133 | 133 | 0.963 |
| 134 | 134 | 0.957 |
| 135 | 135 | 0.375 |
| 136 | 136 | 0.636 |
| 137 | 137 | 0.1 |
| 138 | 138 | 0.761 |
| 139 | 139 | 0.237 |
| 14 | 14 | 0.595 |
| 140 | 140 | 0.00661 |
| 141 | 141 | 0.65 |
| 142 | 142 | 0.196 |
| 143 | 143 | 0.379 |
| 144 | 144 | 0.627 |
| 145 | 145 | 0.352 |
| 146 | 146 | 0.997 |
| 147 | 147 | 0.175 |
| 148 | 148 | 0.0431 |
| 149 | 149 | 0.702 |
| 15 | 15 | 0.085 |
| 150 | 150 | 0.672 |
| 151 | 151 | 0.659 |
| 152 | 152 | 0.491 |
| 153 | 153 | 0.867 |
| 154 | 154 | 0.265 |
| 155 | 155 | 0.0661 |
| 156 | 156 | 0.703 |
| 157 | 157 | 0.65 |
| 158 | 158 | 0.126 |
| 159 | 159 | 0.986 |
| 16 | 16 | 0.202 |
| 160 | 160 | 0.471 |
| 161 | 161 | 0.0913 |
| 162 | 162 | 0.648 |
| 163 | 163 | 0.814 |
| 164 | 164 | 0.428 |
| 165 | 165 | 0.0286 |
| 166 | 166 | 0.708 |
| 167 | 167 | 0.661 |
| 168 | 168 | 0.261 |
| 169 | 169 | 0.0801 |
| 17 | 17 | 0.566 |
| 18 | 18 | 0.455 |
| 19 | 19 | 0.609 |
| 2 | 2 | 0.958 |
| 20 | 20 | 0.248 |
| 21 | 21 | 0.219 |
| 22 | 22 | 0.762 |
| 23 | 23 | 0.393 |
| 24 | 24 | 0.738 |
| 25 | 25 | 0.271 |
| 26 | 26 | 0.352 |
| 27 | 27 | 0.729 |
| 28 | 28 | 0.487 |
| 29 | 29 | 0.0938 |
| 3 | 3 | 0.0545 |
| 30 | 30 | 0.57 |
| 31 | 31 | 0.69 |
| 32 | 32 | 0.475 |
| 33 | 33 | 0.312 |
| 34 | 34 | 0.93 |
| 35 | 35 | 0.369 |
| 36 | 36 | 0.0776 |
| 37 | 37 | 0.187 |
| 38 | 38 | 0.363 |
| 39 | 39 | 0.989 |
| 4 | 4 | 0.408 |
| 40 | 40 | 0.156 |
| 41 | 41 | 0.28 |
| 42 | 42 | 0.19 |
| 43 | 43 | 0.124 |
| 44 | 44 | 0.0116 |
| 45 | 45 | 0.974 |
| 46 | 46 | 0.0873 |
| 47 | 47 | 0.137 |
| 48 | 48 | 0.263 |
| 49 | 49 | 0.076 |
| 5 | 5 | 0.439 |
| 50 | 50 | 0.874 |
| 51 | 51 | 0.269 |
| 52 | 52 | 0.195 |
| 53 | 53 | 0.528 |
| 54 | 54 | 0.433 |
| 55 | 55 | 0.557 |
| 56 | 56 | 0.881 |
| 57 | 57 | 0.169 |
| 58 | 58 | 0.0418 |
| 59 | 59 | 0.283 |
| 6 | 6 | 0.741 |
| 60 | 60 | 0.112 |
| 61 | 61 | 0.566 |
| 62 | 62 | 0.0238 |
| 63 | 63 | 0.486 |
| 64 | 64 | 0.32 |
| 65 | 65 | 0.508 |
| 66 | 66 | 0.244 |
| 67 | 67 | 0.255 |
| 68 | 68 | 0.75 |
| 69 | 69 | 0.699 |
| 7 | 7 | 0.103 |
| 70 | 70 | 0.027 |
| 71 | 71 | 0.0514 |
| 72 | 72 | 0.226 |
| 73 | 73 | 0.924 |
| 74 | 74 | 0.721 |
| 75 | 75 | 0.083 |
| 76 | 76 | 0.499 |
| 77 | 77 | 0.914 |
| 78 | 78 | 0.0284 |
| 79 | 79 | 0.857 |
| 8 | 8 | 0.513 |
| 80 | 80 | 0.98 |
| 81 | 81 | 0.394 |
| 82 | 82 | 0.172 |
| 83 | 83 | 0.231 |
| 84 | 84 | 0.257 |
| 85 | 85 | 0.401 |
| 86 | 86 | 0.319 |
| 87 | 87 | 0.381 |
| 88 | 88 | 0.306 |
| 89 | 89 | 0.535 |
| 9 | 9 | 0.94 |
| 90 | 90 | 0.00705 |
| 91 | 91 | 0.436 |
| 92 | 92 | 0.431 |
| 93 | 93 | 0.793 |
| 94 | 94 | 0.0813 |
| 95 | 95 | 0.152 |
| 96 | 96 | 0.00189 |
| 97 | 97 | 0.728 |
| 98 | 98 | 0.163 |
| 99 | 99 | 0.656 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13535
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0011136 human migratory langerhans cells sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000219 (motile cell)
0000738 (leukocyte)
0000990 (conventional dendritic cell)
0000255 (eukaryotic cell)
0000451 (dendritic cell)
0000453 (Langerhans cell)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0011136 (human migratory langerhans cells sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
