FFCP PHASE1:Mm9::chr18:25327363..25327385,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=66648 | |EntrezGene=66648 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=60 | |||
|TSSclassifier=NA | |||
|UniProt=D3YTV1,E9QLP0,Q66JT5,E9PUD7 | |UniProt=D3YTV1,E9QLP0,Q66JT5,E9PUD7 | ||
|association_with_transcript=0bp_to_ENSMUST00000025118,NM_001004361,NM_001142698,uc008ehf.2,uc012bal.1_5end | |association_with_transcript=0bp_to_ENSMUST00000025118,NM_001004361,NM_001142698,uc008ehf.2,uc012bal.1_5end | ||
|cluster_id=chr18:25327363..25327385,- | |||
|description=CAGE_peak_4_at_5730494M16Rik_5end | |description=CAGE_peak_4_at_5730494M16Rik_5end | ||
|id=chr18:25327363..25327385,- | |id=chr18:25327363..25327385,- | ||
|ontology_enrichment_celltype=CL:0000117!5.45e-08!23;CL:0000337!5.45e-08!23 | |ontology_enrichment_celltype=CL:0000117!5.45e-08!23;CL:0000337!5.45e-08!23 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.34e-10,23;CL:0000337,2.34e-10,23;CL:0000540,9.08e-07,33;CL:0000047,9.08e-07,33;CL:0000031,9.08e-07,33;CL:0000404,9.08e-07,33 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!1.32e-11!34;UBERON:0002791!1.91e-09!29;UBERON:0003528!1.91e-09!29;UBERON:0001893!1.91e-09!29;UBERON:0003056!1.98e-09!49;UBERON:0002346!4.22e-09!71;UBERON:0003075!4.22e-09!71;UBERON:0007284!4.22e-09!71;UBERON:0000073!1.11e-08!75;UBERON:0001016!1.11e-08!75;UBERON:0001049!2.20e-08!52;UBERON:0005068!2.20e-08!52;UBERON:0006241!2.20e-08!52;UBERON:0007135!2.20e-08!52;UBERON:0002780!2.21e-08!39;UBERON:0001890!2.21e-08!39;UBERON:0006240!2.21e-08!39;UBERON:0004121!2.24e-08!102;UBERON:0000924!2.24e-08!102;UBERON:0006601!2.24e-08!102;UBERON:0001017!2.33e-08!73;UBERON:0005743!2.33e-08!73;UBERON:0003080!3.12e-08!40;UBERON:0000956!2.47e-07!21;UBERON:0001869!2.47e-07!21;UBERON:0000203!2.47e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,7.17e-14,34;UBERON:0003528,1.56e-11,29;UBERON:0002791,1.56e-11,29;UBERON:0001893,1.56e-11,29;UBERON:0003056,9.21e-10,49;UBERON:0010371,5.28e-09,73;UBERON:0000956,5.98e-09,21;UBERON:0001869,5.98e-09,21;UBERON:0000203,5.98e-09,21;UBERON:0002346,7.63e-09,64;UBERON:0003075,7.63e-09,64;UBERON:0007284,7.63e-09,64;UBERON:0002780,8.78e-09,39;UBERON:0001890,8.78e-09,39;UBERON:0006240,8.78e-09,39;UBERON:0003080,2.42e-08,40;UBERON:0004121,7.74e-08,95;UBERON:0000924,7.74e-08,95;UBERON:0006601,7.74e-08,95;UBERON:0001049,1.19e-07,52;UBERON:0005068,1.19e-07,52;UBERON:0006241,1.19e-07,52;UBERON:0007135,1.19e-07,52;UBERON:0000073,5.19e-07,54;UBERON:0002619,9.28e-07,17 | |||
|phase1_expression=0.480446541314382,0,0,0,0,1.17515490338323,0.700837921786577,0.774739940649458,2.39340827657833,1.63845168425395,0.34243593645101,0.797721589953364,0,0.262261207256992,0.666219523631325,0.809901069559304,0,0,0.959801035240171,0.42438965179803,3.656861476496,0.297872853602656,0.783599367416806,0.159992422793407,0.45881856213434,0,1.29228598847722,0,0.190023419456374,0.252030129759931,0.443461021310609,1.27006134691926,0.61506478758457,0,0.866554859253824,0.498703936075477,0,0.418531630736908,1.5626706890476,0,0.588231488031014,0,0.485510353031154,0.377690453926732,0.202753862439029,0.367093504323363,0.782391344348039,0.872100625521786,0.659058548203415,0.388859798148567,0.839918529752175,2.87505128729943,0.503347818173209,0.725362142011344,0.336093799142464,0.771778308107841,0.573066879877513,0,4.24864567805155,3.1739458756322,3.80298842103708,0.338844532069132,2.66788438833342,0,0,1.4209602298922,0.599200221036809,0.768436610643109,2.38486108309499,1.35005938331691,2.73422449756797,2.85650984403804,0.883474163806454,10.2892271340561,8.81778333367775,6.43453150627015,0,0.766124028511126,0.614426133024974,3.29715719325485,4.20843160571084,4.16730696445408,0.279182999001381,2.25105044012672,1.06958773443767,2.65165726926301,4.27115042397309,2.98239113320481,1.06016670666458,1.20914496170857,0,0,0.679971333707751,0.539703191637817,0,0,0.842666520790511,1.87473354835864,1.29893002301434,2.47337702157238,0.14084341977668,1.28326477414318,0,0,1.08245520505607,1.01343946190039,0.505524445014783,0.45673551887624,0.776813650941515,0.742210695324124,0.867426633830679,1.21786191324856,0.922461989024234,0.753613202763113,0.23517741427141,0.376999773989026,0,0.144599356919912,0,0.647067399789637,0.441683036920787,0.969750506270444,0,0.292780797011547,0.41889341362691,0.255457055208591,0.359445373517761,0,1.01656181658452,0.748953197024114,0.915001205637253,6.65968066198181,1.56441888173049,1.53429274398198,0.62336413367868,0.811206315338788,0.712875546952214,0.373220911830279,0.252722758433675,0.420883711772948,1.04096354370163,1.60931473103431,1.0803727788321,1.35634336052144,1.15662048557257,1.5373646434182,1.78033276663485,0.776110112217047,2.15567992932842,2.08016688184601,1.23165786914764,1.31517439456545,0.834141747676794,0.696504333044333,1.23469281844766,0.796137067273973,0.702213187313235,0.772043721344145,0.284163499395593,1.86413195281952,0.938104239924385,1.2604344302271,0.946978942340841,0.983821158737019,0.617068451549513,0,0,0.233530684734339,0.822799249567402,0.985004784474571,0.648550476366846,0.146199987425332,0.219550115291051,0,1.05144974282064,3.19004298375782,0,1.32225283331772,1.06644125267617,1.16118335930219,0.644337306610467,0.80673409849337,0,0.380451252225118,0.474529061544512,0.164698954724011,0,0.596869416123452,0.58489226135736,0.898819408654221,0.432276099749388,0,1.51734320762465,0.685491075658373,0,0.407302655690628,0,0.561086559122548,1.01178459398812,0.738050739898011,0.627994911365499,0.740382983530803,0.592905254174298,0.83422552858047,1.37591296579242,1.12431056192427,0.608580364165509,0.482354319504834,0.25462585178142,0,0.162135226775035,0.549122826376163,0,0.372140947668503,0,0.757736633841335,0.896987067609561,0.482443521363367,0.923765950833023,0.947457058852424,0.977789858652155,1.01847051465113,0.704070744865506,0.502518772325447,0.238043640886014,0.585400943573396,0.788175720530955,0.664394068946325,1.11618338060241,0.327726629431476,0.172684981865896,0.433947175744535,0,0.54390568381871,0,0.827810238914197,0.160550589987792,0.820481806145422,1.3114795630134,0,0.94652465824877,1.56175497718655,0.646270193198397,0.716906393857656,0.891194696329576,0.566153061577665,0.404810701674894,1.46127928955656,0.790575555893047,0.642642632843614,1.41940085208269,1.6025904330053,0.977321756121456,1.31976098378028,0,0.242780636154981,0.604647113929502,0.188605079755898,0.295301892880773,0.614870295887855,0.258428293168221,0.363533729477506,1.42598951353889,0,0,0,0.340439605753788,1.26042765821917,1.68166288917581,0.214337035031592,1.41872186913819,0.713475270408282,0.987294123612726,0.913394847343798,0.23467170806371,0.42366414172764,0.220528398054962,1.48397627647332,0.645857706783622,1.99032652262914,1.55184047204077,2.29797259643086,0.582961673259701,0.741701208042039,0.170870880797853,0.82554747185289,0.185194527369712,0.941842285023455,0.546776910884101,0.228778173206523,1.18984900995699,1.39951452323658,1.79659965945751,0,0.949007980743406,1.62655573701479,0.432021363287205,0.209088296014469,0.655087691238533,0.944050424693745,0.330613822901344,0,0.129614973291793,0,25.9298751794728,0.897099276263873,0.66183396182839,1.36115831840833,1.54991788173277,0.844780627453891,1.40828686374905,1.17183946359555,2.83120229949419,5.31485065817213,10.3690802252832,0.632022241256357,0.405450430580328,0.821687657318618,0.389762468933385,1.43221356533985,0.79472541912506,1.32214994471966,0.443068581523732,0.504832249740738,0.685861259894999,1.31074040677893,0.682205165178267,0.192423683280659,0.701261413089414,0.226730383615211,0.887943813496259,1.07656627931371,1.17519231454855,1.54551675225752,0.563047426353546,0.549454872801795,0.214368379079066,0,1.6942555278512,3.22227665555024,4.01026859407578,1.54667864109319,0.685082519770642,0.755393897389701,2.02506750069542,1.80128481289688,2.71885445390523,1.55328093525546,1.86817225651518,2.39414924040619,3.07320490357441,2.18796045361465,1.67690530102386,1.2869045591501,1.33348036680969,0.412070114477788,1.92551525755089,0.758091635291392,1.52087579934144,1.32038438970253,1.31098110457835,0.832326981263301,0.804096565378586,0.952587382566147,0.927074607558844,1.15745532278223,0.412085900803307,1.91358596174717,1.37147700954166,0.354951612318675,0.715308569841963,0.872078499793971,1.03520318456864,1.69229215783353,0.73171189149109,0.526139422875686,1.08643291076689,1.68342681497322,1.18635018124174,0.985044823755635,1.63692417267876,1.85924209423159,0.771626443924566,2.24829520144151,0.467863216890817,1.28922632428979,0.382576664137687,0.661774257358546,0.695603506861264 | |phase1_expression=0.480446541314382,0,0,0,0,1.17515490338323,0.700837921786577,0.774739940649458,2.39340827657833,1.63845168425395,0.34243593645101,0.797721589953364,0,0.262261207256992,0.666219523631325,0.809901069559304,0,0,0.959801035240171,0.42438965179803,3.656861476496,0.297872853602656,0.783599367416806,0.159992422793407,0.45881856213434,0,1.29228598847722,0,0.190023419456374,0.252030129759931,0.443461021310609,1.27006134691926,0.61506478758457,0,0.866554859253824,0.498703936075477,0,0.418531630736908,1.5626706890476,0,0.588231488031014,0,0.485510353031154,0.377690453926732,0.202753862439029,0.367093504323363,0.782391344348039,0.872100625521786,0.659058548203415,0.388859798148567,0.839918529752175,2.87505128729943,0.503347818173209,0.725362142011344,0.336093799142464,0.771778308107841,0.573066879877513,0,4.24864567805155,3.1739458756322,3.80298842103708,0.338844532069132,2.66788438833342,0,0,1.4209602298922,0.599200221036809,0.768436610643109,2.38486108309499,1.35005938331691,2.73422449756797,2.85650984403804,0.883474163806454,10.2892271340561,8.81778333367775,6.43453150627015,0,0.766124028511126,0.614426133024974,3.29715719325485,4.20843160571084,4.16730696445408,0.279182999001381,2.25105044012672,1.06958773443767,2.65165726926301,4.27115042397309,2.98239113320481,1.06016670666458,1.20914496170857,0,0,0.679971333707751,0.539703191637817,0,0,0.842666520790511,1.87473354835864,1.29893002301434,2.47337702157238,0.14084341977668,1.28326477414318,0,0,1.08245520505607,1.01343946190039,0.505524445014783,0.45673551887624,0.776813650941515,0.742210695324124,0.867426633830679,1.21786191324856,0.922461989024234,0.753613202763113,0.23517741427141,0.376999773989026,0,0.144599356919912,0,0.647067399789637,0.441683036920787,0.969750506270444,0,0.292780797011547,0.41889341362691,0.255457055208591,0.359445373517761,0,1.01656181658452,0.748953197024114,0.915001205637253,6.65968066198181,1.56441888173049,1.53429274398198,0.62336413367868,0.811206315338788,0.712875546952214,0.373220911830279,0.252722758433675,0.420883711772948,1.04096354370163,1.60931473103431,1.0803727788321,1.35634336052144,1.15662048557257,1.5373646434182,1.78033276663485,0.776110112217047,2.15567992932842,2.08016688184601,1.23165786914764,1.31517439456545,0.834141747676794,0.696504333044333,1.23469281844766,0.796137067273973,0.702213187313235,0.772043721344145,0.284163499395593,1.86413195281952,0.938104239924385,1.2604344302271,0.946978942340841,0.983821158737019,0.617068451549513,0,0,0.233530684734339,0.822799249567402,0.985004784474571,0.648550476366846,0.146199987425332,0.219550115291051,0,1.05144974282064,3.19004298375782,0,1.32225283331772,1.06644125267617,1.16118335930219,0.644337306610467,0.80673409849337,0,0.380451252225118,0.474529061544512,0.164698954724011,0,0.596869416123452,0.58489226135736,0.898819408654221,0.432276099749388,0,1.51734320762465,0.685491075658373,0,0.407302655690628,0,0.561086559122548,1.01178459398812,0.738050739898011,0.627994911365499,0.740382983530803,0.592905254174298,0.83422552858047,1.37591296579242,1.12431056192427,0.608580364165509,0.482354319504834,0.25462585178142,0,0.162135226775035,0.549122826376163,0,0.372140947668503,0,0.757736633841335,0.896987067609561,0.482443521363367,0.923765950833023,0.947457058852424,0.977789858652155,1.01847051465113,0.704070744865506,0.502518772325447,0.238043640886014,0.585400943573396,0.788175720530955,0.664394068946325,1.11618338060241,0.327726629431476,0.172684981865896,0.433947175744535,0,0.54390568381871,0,0.827810238914197,0.160550589987792,0.820481806145422,1.3114795630134,0,0.94652465824877,1.56175497718655,0.646270193198397,0.716906393857656,0.891194696329576,0.566153061577665,0.404810701674894,1.46127928955656,0.790575555893047,0.642642632843614,1.41940085208269,1.6025904330053,0.977321756121456,1.31976098378028,0,0.242780636154981,0.604647113929502,0.188605079755898,0.295301892880773,0.614870295887855,0.258428293168221,0.363533729477506,1.42598951353889,0,0,0,0.340439605753788,1.26042765821917,1.68166288917581,0.214337035031592,1.41872186913819,0.713475270408282,0.987294123612726,0.913394847343798,0.23467170806371,0.42366414172764,0.220528398054962,1.48397627647332,0.645857706783622,1.99032652262914,1.55184047204077,2.29797259643086,0.582961673259701,0.741701208042039,0.170870880797853,0.82554747185289,0.185194527369712,0.941842285023455,0.546776910884101,0.228778173206523,1.18984900995699,1.39951452323658,1.79659965945751,0,0.949007980743406,1.62655573701479,0.432021363287205,0.209088296014469,0.655087691238533,0.944050424693745,0.330613822901344,0,0.129614973291793,0,25.9298751794728,0.897099276263873,0.66183396182839,1.36115831840833,1.54991788173277,0.844780627453891,1.40828686374905,1.17183946359555,2.83120229949419,5.31485065817213,10.3690802252832,0.632022241256357,0.405450430580328,0.821687657318618,0.389762468933385,1.43221356533985,0.79472541912506,1.32214994471966,0.443068581523732,0.504832249740738,0.685861259894999,1.31074040677893,0.682205165178267,0.192423683280659,0.701261413089414,0.226730383615211,0.887943813496259,1.07656627931371,1.17519231454855,1.54551675225752,0.563047426353546,0.549454872801795,0.214368379079066,0,1.6942555278512,3.22227665555024,4.01026859407578,1.54667864109319,0.685082519770642,0.755393897389701,2.02506750069542,1.80128481289688,2.71885445390523,1.55328093525546,1.86817225651518,2.39414924040619,3.07320490357441,2.18796045361465,1.67690530102386,1.2869045591501,1.33348036680969,0.412070114477788,1.92551525755089,0.758091635291392,1.52087579934144,1.32038438970253,1.31098110457835,0.832326981263301,0.804096565378586,0.952587382566147,0.927074607558844,1.15745532278223,0.412085900803307,1.91358596174717,1.37147700954166,0.354951612318675,0.715308569841963,0.872078499793971,1.03520318456864,1.69229215783353,0.73171189149109,0.526139422875686,1.08643291076689,1.68342681497322,1.18635018124174,0.985044823755635,1.63692417267876,1.85924209423159,0.771626443924566,2.24829520144151,0.467863216890817,1.28922632428979,0.382576664137687,0.661774257358546,0.695603506861264 | ||
|short_description=p4@5730494M16Rik | |short_description=p4@5730494M16Rik | ||
}} | }} |
Latest revision as of 03:02, 27 September 2015
Short description: | p4@5730494M16Rik |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_5730494M16Rik_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | 0bp_to_ENSMUST00000025118, NM_001004361, NM_001142698, uc008ehf.2, uc012bal.1_5end |
EntrezGene: | 5730494M16Rik |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.34e-10 | 23 |
neuroblast (sensu Vertebrata) | 2.34e-10 | 23 |
neuron | 9.08e-07 | 33 |
neuronal stem cell | 9.08e-07 | 33 |
neuroblast | 9.08e-07 | 33 |
electrically signaling cell | 9.08e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
gray matter | 7.17e-14 | 34 |
brain grey matter | 1.56e-11 | 29 |
regional part of telencephalon | 1.56e-11 | 29 |
telencephalon | 1.56e-11 | 29 |
pre-chordal neural plate | 9.21e-10 | 49 |
ecto-epithelium | 5.28e-09 | 73 |
cerebral cortex | 5.98e-09 | 21 |
cerebral hemisphere | 5.98e-09 | 21 |
pallium | 5.98e-09 | 21 |
neurectoderm | 7.63e-09 | 64 |
neural plate | 7.63e-09 | 64 |
presumptive neural plate | 7.63e-09 | 64 |
regional part of forebrain | 8.78e-09 | 39 |
forebrain | 8.78e-09 | 39 |
future forebrain | 8.78e-09 | 39 |
anterior neural tube | 2.42e-08 | 40 |
ectoderm-derived structure | 7.74e-08 | 95 |
ectoderm | 7.74e-08 | 95 |
presumptive ectoderm | 7.74e-08 | 95 |
neural tube | 1.19e-07 | 52 |
neural rod | 1.19e-07 | 52 |
future spinal cord | 1.19e-07 | 52 |
neural keel | 1.19e-07 | 52 |
regional part of nervous system | 5.19e-07 | 54 |
regional part of cerebral cortex | 9.28e-07 | 17 |