FFCP PHASE1:Hg19::chr12:53535758..53535789,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=22804 | |HGNC=22804 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-47bp_to_ENST00000550979_5end | |association_with_transcript=-47bp_to_ENST00000550979_5end | ||
|cluster_id=chr12:53535758..53535789,+ | |||
|coexpression_cluster_id=C1019 | |||
|description=CAGE_peak_1_at_HIGD1AP1_5end | |description=CAGE_peak_1_at_HIGD1AP1_5end | ||
|id=chr12:53535758..53535789,+ | |id=chr12:53535758..53535789,+ | ||
|ontology_enrichment_celltype=CL:0000860!5.32e-13!45;CL:0002057!1.64e-12!42;CL:0000839!2.26e-10!70;CL:0000557!8.68e-10!71;CL:0002009!2.34e-09!65;CL:0002194!1.51e-08!63;CL:0000576!1.51e-08!63;CL:0000040!1.51e-08!63;CL:0000559!1.51e-08!63;CL:0000766!1.78e-07!76 | |ontology_enrichment_celltype=CL:0000860!5.32e-13!45;CL:0002057!1.64e-12!42;CL:0000839!2.26e-10!70;CL:0000557!8.68e-10!71;CL:0002009!2.34e-09!65;CL:0002194!1.51e-08!63;CL:0000576!1.51e-08!63;CL:0000040!1.51e-08!63;CL:0000559!1.51e-08!63;CL:0000766!1.78e-07!76 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.04e-11;33!CL:0002057;1.04e-11;33!CL:0000473;5.81e-10;39!CL:0000234;5.81e-10;39!CL:0000197;2.71e-08;6!CL:0000098;2.71e-08;6!CL:0002167;2.71e-08;6!CL:0000576;6.94e-08;48!CL:0000453;7.36e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,6.00e-15,48;CL:0000234,6.00e-15,48;CL:0000860,6.97e-14,42;CL:0002057,6.97e-14,42;CL:0000839,1.65e-12,66;CL:0000557,6.22e-12,67;CL:0002009,8.35e-12,61;CL:0002194,2.25e-10,59;CL:0000576,2.25e-10,59;CL:0000040,2.25e-10,59;CL:0000559,2.25e-10,59;CL:0000763,1.40e-09,108;CL:0000049,1.40e-09,108;CL:0000766,9.02e-09,72;CL:0000197,2.81e-08,6;CL:0000098,2.81e-08,6;CL:0002167,2.81e-08,6;CL:0000453,7.72e-08,5 | |||
|ontology_enrichment_development_v019=CL:0002057;5.64e-10;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.14e-07!80;UBERON:0001737!4.78e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.06e-12;9!UBERON:0001557;1.06e-12;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,6.67e-13,9;UBERON:0002371,2.11e-10,76;UBERON:0004765,3.62e-09,90;UBERON:0001474,5.03e-09,82;UBERON:0002405,2.49e-08,93;UBERON:0001434,2.15e-07,100 | |||
|phase1_expression=0.54503513781167,0,0.422863212287913,1.0007329835313,0,0,0,0,0.261185628199839,0.245733936501509,0,0,0,0.37129905888014,0,8.74022690387308,3.61616716814386,2.92124036154949,4.87932798790507,0,0,0,0,0.136874425072884,0.125542639594803,0.458480434487708,0.0821005894499457,0.393553906568396,0,0,0.309632246632152,0,0,0,0,0.284338464974843,0,0,0,0,0,0,0,2.18097358169347,1.51150377475524,1.21292030593908,0.929716147622738,1.23350366406548,2.16794459626573,1.1507695692886,1.7931249457037,2.12834006899727,0,2.5819387343353,2.70852973188684,0.752969358170419,1.36453075028923,2.9214052977861,1.22433556948361,0.962787081228281,2.55734850319616,0,0.598390972864896,0.852449501065388,0.290209238628584,1.13477044938228,2.4912889959823,1.7587406567972,0.521482918420201,2.82345498116652,1.81619850790011,0.368277635987565,2.84816148696796,1.69004229049553,2.12604299965044,2.30624510059213,1.01095768031846,0.600707571366025,0.803627933485401,0.570025487482497,1.19350006319454,3.10529061399878,0,1.09227722252426,1.77901850772711,0.853460445133014,0,0.574752439954483,0,0,0,0,0,0,0,1.31692042387539,0,0,0,1.83905144929746,0.32592226663359,0,1.94826728407911,2.22820913770347,1.47302953737419,1.99380505125259,1.62482318259009,1.28091319725675,1.30059347559878,1.47994114143309,0,0.869409257205157,0.444859689486181,0.267540828089713,2.09071047609954,1.92625882585863,0.383220493601921,0,1.01207876807801,0,0.651083453856419,0.950452044448374,1.05402583354441,0.639933055772092,1.24930726552346,0.236777252044017,0,0,0,0,0,0,4.34732710268003,0,0.50133791063589,0.144846518960824,0,0,0,0.221729397462564,0.087834785693126,0.196468613246569,0,0,0,0.348259474598534,0,0.476981248610684,2.28797964312051,1.48583000531826,0.198762407366705,0,0.347140501607594,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0.0892997282840798,0,0.112611480483322,0,0,0.183201743930407,0,0,0,0.496971951695318,0.25326102332916,2.1185468930115,0.286836620748814,0,0.560677600142307,0,0,0.311211035399766,0.134710672069688,0.163461903113459,0,0,0,0,0,0.298897361103602,0.23486899728753,0,0.140450806702248,0,0.245668634623536,0.309977343527296,0,0,0,0,0,0.125118519871964,0.277064115484183,0,0.30648779579902,0,0.340296549480063,0,0.213557388818567,0,0,0.103052529238439,0,0,1.35021065793013,0,0,0.0920498986422993,3.55621325001386,0,0.302256294682921,0,0,0,0,0.243947412259191,0,0,0,1.26160425437814,2.18986415445498,0,0,0,0.464367928031979,0,3.66751080123516,2.86593973132773,3.13314338848527,2.97793726377464,2.17879444092406,3.08451804844426,2.83145747136345,3.92442930250692,5.38646019724947,0,0,0,0,0,0,0.590789906681404,0,0.368965315629341,3.60292401626904,0.109750285408626,0,0.100528972411631,0,0,0,0,3.36198174427723,3.40485213283883,0.144366447761074,2.31492756288305,2.09279567458058,0,0,0,0.234004265139238,0,0,10.9188383329259,11.3420077793909,0.358234090811393,0.290633938513962,0.383382679165211,0,3.52193736052904,0.414656231081544,1.44119953416961,0.88369703398466,3.93686944611448,0,0,0,0.308482478109971,2.70308752059526,5.14487578735041,0,0,0.07333828582095,0.129271715757778,0,2.535908257668,0,0,0,0,0,0.142977993658148,0.542621605391443,0,0,1.06617584622764,0,0.602878754119172,0.871533458600294,0,1.2162378064119,2.51128545716063,4.21667878966063,0.239624855491583,0,1.42636905040718,0.144781306667579,0.205476322550383,0.179060963239896,0,0,0,0,0,0,0,0,4.46557126157214,0,0,0.414415513436035,0.12269149171914,0,0,2.70362119990049,2.67643483195743,2.05013139544115,1.28855556491985,0,0,0,0,0,0.260650843404249,0,0,0,0,0.106727557803444,0.303127571446259,0,0,0.248107807818777,2.60885354589706,0,0.128139149255701,0,0.160853921143607,1.48418066444991,0,0.355123450626254,0.328508624055237,0,0,0.241718899183244,0.601519410909855,0.460404944679482,0.114814448164607,0.182091168006717,0.262248829918848,0,0.231046011313244,0,0,0.527758144464379,0,0,0,0,0.270946437543853,0,0,0,0.447749509444357,6.57779629937804,8.10449898177192,0,0,0.325378394664303,0.412164046590889,0,0.082509499920588,0.574265537996172,0,0,0.096670718292122,0.308097234229289,0.15350367472613,0,0.107420244868274,0,0,0.0890320356467374,0.495854746082934,0.192190067365106,0.893288987462089,0.10115778085555,0,0.31481234683064,0,0,0,0,0,0,0,0,0.190630193923825,0,0.42793898803392,0,0,0.179872457583315,0.274537029736055,0.235624804691373,0.202182481573316,0,0,0,0,0,0.272999822815972,0.282810863907425,0,0,0.66343897524122,0,0,1.31178950409327,0.202910376962704,0,0,4.58916327052965,3.7334635584986,0,0.354761064070598,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0.459446800413919,0,0,0,0.238231775457789,0,0,0.540031437238115,0,0,0,0,0.185803175125719,0.28853842595289,0,0.159426272728822,0.199579371432817,0.383010740264733,0,2.59697552219644,0,0,0,0,1.86220955581764,0,0,0,0,0,0,0,0.19538809540204,0,0,3.78637949866376,0,0,0,0.146508179271894,0.121360521749513,0.891547074219827,0,3.10367830158997,2.37571744666111,0.307160702099232,5.96488588659779,0.140669416410513,0.111308705022906,0,0,0,0,1.51159648712566,0,0,0,0.17973670229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| ||
|short_description=p1@HIGD1AP1 | |short_description=p1@HIGD1AP1 | ||
}} | }} |
Latest revision as of 01:48, 19 September 2015
Short description: | p1@HIGD1AP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HIGD1AP1_5end |
Coexpression cluster: | C1019_occipital_medial_amygdala_caudate_hippocampus_cerebellum_parietal |
Association with transcript: | -47bp_to_ENST00000550979_5end |
EntrezGene: | NA |
HGNC: | 22804 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 6.00e-15 | 48 |
phagocyte | 6.00e-15 | 48 |
classical monocyte | 6.97e-14 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.97e-14 | 42 |
myeloid lineage restricted progenitor cell | 1.65e-12 | 66 |
granulocyte monocyte progenitor cell | 6.22e-12 | 67 |
macrophage dendritic cell progenitor | 8.35e-12 | 61 |
monopoietic cell | 2.25e-10 | 59 |
monocyte | 2.25e-10 | 59 |
monoblast | 2.25e-10 | 59 |
promonocyte | 2.25e-10 | 59 |
myeloid cell | 1.40e-09 | 108 |
common myeloid progenitor | 1.40e-09 | 108 |
myeloid leukocyte | 9.02e-09 | 72 |
receptor cell | 2.81e-08 | 6 |
sensory epithelial cell | 2.81e-08 | 6 |
olfactory epithelial cell | 2.81e-08 | 6 |
Langerhans cell | 7.72e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
larynx | 6.67e-13 | 9 |
bone marrow | 2.11e-10 | 76 |
skeletal element | 3.62e-09 | 90 |
bone element | 5.03e-09 | 82 |
immune system | 2.49e-08 | 93 |
skeletal system | 2.15e-07 | 100 |