UBERON:0003684: Difference between revisions
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|def="body cavity of the human body (and animal bodies) that holds the bulk of the viscera. It is located below (or inferior to) the thoracic cavity, and above the pelvic cavity. It is a part of the abdominopelvic cavity. Organs of the abdominal cavity include the stomach, liver, gallbladder, spleen, pancreas, small intestine, kidneys, and large intestine. The abdominal cavity is lined with a protective membrane termed the peritoneum. The kidneys are located in the abdominal cavity behind the peritoneum, in the retroperitoneum. The viscera are also covered, in the front, with a layer of peritoneum called the greater omentum (or omental apron)." [Wikipedia:Abdominal_cavity] | |def="body cavity of the human body (and animal bodies) that holds the bulk of the viscera. It is located below (or inferior to) the thoracic cavity, and above the pelvic cavity. It is a part of the abdominopelvic cavity. Organs of the abdominal cavity include the stomach, liver, gallbladder, spleen, pancreas, small intestine, kidneys, and large intestine. The abdominal cavity is lined with a protective membrane termed the peritoneum. The kidneys are located in the abdominal cavity behind the peritoneum, in the retroperitoneum. The viscera are also covered, in the front, with a layer of peritoneum called the greater omentum (or omental apron)." [Wikipedia:Abdominal_cavity] | ||
|xref=EFO:0000213;;FMA:12266;;GAID:17;;galen:AbdominalCavity;;http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Scheme_body_cavities-en.svg/200px-Scheme_body_cavities-en.svg.png;;MESH:A.01.047.025;;ncithesaurus:Abdominal_Cavity;;OpenCyc:Mx4rvZR1TJwpEbGdrcN5Y29ycA;;SCTID:361294009 | |xref=EFO:0000213;;FMA:12266;;GAID:17;;galen:AbdominalCavity;;http://upload.wikimedia.org/wikipedia/commons/e/ee/Scheme_body_cavities-en.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Scheme_body_cavities-en.svg/200px-Scheme_body_cavities-en.svg.png;;MESH:A.01.047.025;;ncithesaurus:Abdominal_Cavity;;OpenCyc:Mx4rvZR1TJwpEbGdrcN5Y29ycA;;SCTID:361294009 | ||
|is_a=UBERON:0002323 | |is_a=UBERON:0002323 | ||
|synonym="cavitas abdominis" RELATED [GAID:17];;"cavity of abdominal compartment" EXACT [FMA:12266];;"cavity of compartment of abdomen" EXACT [FMA:12266];;"space of abdominal compartment" EXACT [FMA:12266] | |synonym="cavitas abdominis" RELATED [GAID:17];;"cavitas abdominis" RELATED LATIN [Wikipedia:Abdominal_cavity];;"cavity of abdominal compartment" EXACT [FMA:12266];;"cavity of compartment of abdomen" EXACT [FMA:12266];;"space of abdominal compartment" EXACT [FMA:12266] | ||
|comment= | |comment= | ||
|alt_id= | |alt_id= | ||
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|obo_creation_date= | |obo_creation_date= | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 17:04, 26 June 2012
| Name: | abdominal cavity | ||
|---|---|---|---|
| Definition: | "body cavity of the human body (and animal bodies) that holds the bulk of the viscera. It is located below (or inferior to) the thoracic cavity, and above the pelvic cavity. It is a part of the abdominopelvic cavity. Organs of the abdominal cavity include the stomach, liver, gallbladder, spleen, pancreas, small intestine, kidneys, and large intestine. The abdominal cavity is lined with a protective membrane termed the peritoneum. The kidneys are located in the abdominal cavity behind the peritoneum, in the retroperitoneum. The viscera are also covered, in the front, with a layer of peritoneum called the greater omentum (or omental apron)." [Wikipedia:Abdominal_cavity] | ||
| Xrefs: |
| ||
| Synonyms: |
"cavitas abdominis" RELATED [GAID:17] "cavitas abdominis" RELATED LATIN [Wikipedia:Abdominal_cavity] "cavity of abdominal compartment" EXACT [FMA:12266] "cavity of compartment of abdomen" EXACT [FMA:12266] "space of abdominal compartment" EXACT [FMA:12266] |
200px-Scheme_body_cavities-en.svg.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002323(body cavity) |
|---|
Children
NA
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10276-104E6
- 10304-104H7
- 10332-105B8
- 11329-117E6 (Preadipocyte - omental, donor2)
- 11403-118D8 (Preadipocyte - omental, donor3)
- 11468-119C1 (Preadipocyte - omental, donor1)
- 11473-119C6 (Adipocyte - omental, donor1)
- 11474-119C7 (Adipocyte - omental, donor2)
- 11475-119C8 (Adipocyte - omental, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003684 (abdominal cavity), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.41e-163 | FFCP PHASE2:Hg19::chr18:20122740..20122747,+#_bca9e4b34513d2dd0cbb3d94e49c888e | p@chr18:20122740..20122747, + |
| 5.41e-163 | FFCP PHASE1:Hg19::chr18:20122740..20122747,+#_bca9e4b34513d2dd0cbb3d94e49c888e | p@chr18:20122740..20122747, + |
| 1.44e-101 | FFCP PHASE2:Hg19::chr15:39087815..39087824,-#_83bfdc5b0e3613704276f505f816fd1b | p@chr15:39087815..39087824, - |
| 1.44e-101 | FFCP PHASE1:Hg19::chr15:39087815..39087824,-#_83bfdc5b0e3613704276f505f816fd1b | p@chr15:39087815..39087824, - |
| 1.83e-98 | FFCP PHASE2:Hg19::chr7:73484112..73484119,+#_7d98052ceca91ac6b68aaa8233220ffb | p43@ELN |
| 1.83e-98 | FFCP PHASE1:Hg19::chr7:73484112..73484119,+#_7d98052ceca91ac6b68aaa8233220ffb | p43@ELN |
| 8.19e-75 | FFCP PHASE2:Hg19::chr15:81225699..81225710,+#_c93a70e8648c3c4c1c938edd400a5159 | p26@KIAA1199 |
| 8.19e-75 | FFCP PHASE1:Hg19::chr15:81225699..81225710,+#_c93a70e8648c3c4c1c938edd400a5159 | p26@KIAA1199 |
| 8.19e-75 | FFCP PHASE2:Hg19::chr4:112437251..112437278,+#_c93a70e8648c3c4c1c938edd400a5159 | p@chr4:112437251..112437278, + |
| 8.19e-75 | FFCP PHASE1:Hg19::chr4:112437251..112437278,+#_c93a70e8648c3c4c1c938edd400a5159 | p@chr4:112437251..112437278, + |
| 1.92e-69 | FFCP PHASE1:Hg19::chr10:105428550..105428555,-#_4c9e3bd51f4da65f15caf273215c4d45 | p25@SH3PXD2A |
| 1.92e-69 | FFCP PHASE2:Hg19::chr10:105428550..105428555,-#_4c9e3bd51f4da65f15caf273215c4d45 | p25@SH3PXD2A |
| 1.46e-68 | FFCP PHASE2:Hg19::chr15:81242191..81242201,+#_e16bcc54aa8bc641932c52fae597ab1c | p19@KIAA1199 |
| 1.46e-68 | FFCP PHASE1:Hg19::chr15:81242191..81242201,+#_e16bcc54aa8bc641932c52fae597ab1c | p19@KIAA1199 |
| 2.94e-68 | FFCP PHASE2:Hg19::chr15:26342114..26342124,+#_24efa67a68a21ce6098f9955bd98cf5b | p@chr15:26342114..26342124, + |
| 2.94e-68 | FFCP PHASE1:Hg19::chr15:26342114..26342124,+#_24efa67a68a21ce6098f9955bd98cf5b | p@chr15:26342114..26342124, + |
| 1.47e-66 | FFCP PHASE2:Hg19::chr7:40251315..40251325,-#_aa694fee3ec669a505ecf7c3a065d04c | p@chr7:40251315..40251325, - |
| 1.47e-66 | FFCP PHASE1:Hg19::chr7:40251315..40251325,-#_aa694fee3ec669a505ecf7c3a065d04c | p@chr7:40251315..40251325, - |
| 5.13e-66 | FFCP PHASE2:Hg19::chr6:30811934..30811939,-#_25f3907f411531d69ecd3a1cf166917f | p@chr6:30811934..30811939, - |
| 5.13e-66 | FFCP PHASE1:Hg19::chr6:30811934..30811939,-#_25f3907f411531d69ecd3a1cf166917f | p@chr6:30811934..30811939, - |
| 1.95e-63 | FFCP PHASE2:Hg19::chr19:18718144..18718158,+#_ec697672d36330de4ce239697189e5f0 | p@chr19:18718144..18718158, + |
| 1.95e-63 | FFCP PHASE1:Hg19::chr19:18718144..18718158,+#_ec697672d36330de4ce239697189e5f0 | p@chr19:18718144..18718158, + |
| 2.22e-63 | FFCP PHASE2:Hg19::chr14:23072291..23072333,+#_9476da4d10ade587d253efecc2774572 | p@chr14:23072291..23072333, + |
| 2.22e-63 | FFCP PHASE1:Hg19::chr14:23072291..23072333,+#_9476da4d10ade587d253efecc2774572 | p@chr14:23072291..23072333, + |
| 6.07e-62 | FFCP PHASE1:Hg19::chr19:18900805..18900820,-#_ab8d03c5e57a6f947fafa00da6053b97 | p@chr19:18900805..18900820, - |
| 6.07e-62 | FFCP PHASE2:Hg19::chr19:18900805..18900820,-#_ab8d03c5e57a6f947fafa00da6053b97 | p@chr19:18900805..18900820, - |
| 6.79e-60 | FFCP PHASE2:Hg19::chr12:8814772..8814786,-#_1eafe34962277289afa389bd12c2f134 | p13@MFAP5 |
| 6.79e-60 | FFCP PHASE1:Hg19::chr12:8814772..8814786,-#_1eafe34962277289afa389bd12c2f134 | p13@MFAP5 |
| 1.49e-59 | FFCP PHASE2:Hg19::chr12:15035058..15035069,+#_d2553cc69c2ab576ace47cad16173a88 | p@chr12:15035058..15035069, + |
| 1.49e-59 | FFCP PHASE1:Hg19::chr12:15035058..15035069,+#_d2553cc69c2ab576ace47cad16173a88 | p@chr12:15035058..15035069, + |
| 1.84e-59 | FFCP PHASE1:Hg19::chr9:93101022..93101028,+#_6329db7a30d714d8c1d85b6e7809f69d | p@chr9:93101022..93101028, + |
| 1.84e-59 | FFCP PHASE2:Hg19::chr9:93101022..93101028,+#_6329db7a30d714d8c1d85b6e7809f69d | p@chr9:93101022..93101028, + |
| 2.98e-59 | FFCP PHASE2:Hg19::chr2:191745264..191745275,+#_fd16acdd21960aadaf6243f10182de1c | p21@GLS |
| 2.98e-59 | FFCP PHASE1:Hg19::chr2:191745264..191745275,+#_fd16acdd21960aadaf6243f10182de1c | p21@GLS |
| 1.01e-58 | FFCP PHASE2:Hg19::chr4:112437339..112437350,+#_717478bc56054ec9aed1f9a29d8385bb | p@chr4:112437339..112437350, + |
| 1.01e-58 | FFCP PHASE1:Hg19::chr4:112437339..112437350,+#_717478bc56054ec9aed1f9a29d8385bb | p@chr4:112437339..112437350, + |
| 1.11e-58 | FFCP PHASE2:Hg19::chr9:103340443..103340454,+#_aea8b969f121dace467c19a5e295cf14 | p4@MURC |
| 1.11e-58 | FFCP PHASE1:Hg19::chr9:103340443..103340454,+#_aea8b969f121dace467c19a5e295cf14 | p4@MURC |
| 2.09e-58 | FFCP PHASE2:Hg19::chr19:18900031..18900054,+#_bf5e0e6f0764af18963136298fb71b88 | p@chr19:18900031..18900054, + |
| 2.09e-58 | FFCP PHASE1:Hg19::chr19:18900031..18900054,+#_bf5e0e6f0764af18963136298fb71b88 | p@chr19:18900031..18900054, + |
| 2.12e-58 | FFCP PHASE2:Hg19::chr8:80414650..80414654,+#_d1081e9dc375239fdf40542ecfc3fecc | p@chr8:80414650..80414654, + |
| 2.12e-58 | FFCP PHASE1:Hg19::chr8:80414650..80414654,+#_d1081e9dc375239fdf40542ecfc3fecc | p@chr8:80414650..80414654, + |
| 4.66e-58 | FFCP PHASE2:Hg19::chr19:18896512..18896527,-#_4ad937f86419595063c33e20967db7ce | p@chr19:18896512..18896527, - |
| 4.66e-58 | FFCP PHASE1:Hg19::chr19:18896512..18896527,-#_4ad937f86419595063c33e20967db7ce | p@chr19:18896512..18896527, - |
| 1.4e-55 | FFCP PHASE2:Hg19::chr19:18896642..18896656,-#_e945755f1d08208b641e50cc6a9b139a | p@chr19:18896642..18896656, - |
| 1.4e-55 | FFCP PHASE1:Hg19::chr19:18896642..18896656,-#_e945755f1d08208b641e50cc6a9b139a | p@chr19:18896642..18896656, - |
| 7.68e-54 | FFCP PHASE2:Hg19::chr19:18900836..18900848,-#_7fe204f6143ba31e1e97be0dc355b798 | p@chr19:18900836..18900848, - |
| 7.68e-54 | FFCP PHASE1:Hg19::chr19:18900836..18900848,-#_7fe204f6143ba31e1e97be0dc355b798 | p@chr19:18900836..18900848, - |
| 6.91e-53 | FFCP PHASE2:Hg19::chr11:103720186..103720199,-#_58032e06f4cceb3b8a39b48bc0bf4eed | p@chr11:103720186..103720199, - |
| 6.91e-53 | FFCP PHASE1:Hg19::chr11:103720186..103720199,-#_58032e06f4cceb3b8a39b48bc0bf4eed | p@chr11:103720186..103720199, - |
| 9.03e-53 | FFCP PHASE2:Hg19::chr6:169622388..169622400,-#_c8bf5006d183ea54bb83c9de5d2832a0 | p@chr6:169622388..169622400, - |
| 9.03e-53 | FFCP PHASE1:Hg19::chr6:169622388..169622400,-#_c8bf5006d183ea54bb83c9de5d2832a0 | p@chr6:169622388..169622400, - |
| 5.4e-52 | FFCP PHASE1:Hg19::chr10:105428632..105428639,-#_5502b58976d56abf6ae0835856bf0373 | p26@SH3PXD2A |
| 5.4e-52 | FFCP PHASE2:Hg19::chr10:105428632..105428639,-#_5502b58976d56abf6ae0835856bf0373 | p26@SH3PXD2A |
| 7.41e-52 | FFCP PHASE2:Hg19::chr15:81214436..81214445,+#_09c8a889efa683504006e38aeefc4caf | p13@KIAA1199 |
| 7.41e-52 | FFCP PHASE1:Hg19::chr15:81214436..81214445,+#_09c8a889efa683504006e38aeefc4caf | p13@KIAA1199 |
| 2.22e-51 | FFCP PHASE2:Hg19::chr6:75831042..75831053,-#_100b936814e01c624090612df41795e3 | p@chr6:75831042..75831053, - |
| 2.22e-51 | FFCP PHASE1:Hg19::chr6:75831042..75831053,-#_100b936814e01c624090612df41795e3 | p@chr6:75831042..75831053, - |
| 3.75e-51 | FFCP PHASE2:Hg19::chr19:18893717..18893745,+#_a83672f965203d9ac36216cb42aebac1 | p@chr19:18893717..18893745, + |
| 3.75e-51 | FFCP PHASE1:Hg19::chr19:18893717..18893745,+#_a83672f965203d9ac36216cb42aebac1 | p@chr19:18893717..18893745, + |
| 4.87e-51 | FFCP PHASE2:Hg19::chr19:18896862..18896874,-#_d0f3e543d07eac2ebc943485602aae78 | p@chr19:18896862..18896874, - |
| 4.87e-51 | FFCP PHASE1:Hg19::chr19:18896862..18896874,-#_d0f3e543d07eac2ebc943485602aae78 | p@chr19:18896862..18896874, - |
| 6.9e-51 | FFCP PHASE2:Hg19::chr19:18897375..18897390,-#_db7077b01569cbddfea85404f4652ea6 | p4@COMP |
| 6.9e-51 | FFCP PHASE1:Hg19::chr19:18897375..18897390,-#_db7077b01569cbddfea85404f4652ea6 | p4@COMP |
| 1.05e-49 | FFCP PHASE2:Hg19::chr5:150138790..150138796,-#_723e74a6d781f3c6d528d9530f8d0aac | p18@DCTN4 |
| 1.05e-49 | FFCP PHASE1:Hg19::chr5:150138790..150138796,-#_723e74a6d781f3c6d528d9530f8d0aac | p18@DCTN4 |
| 1.24e-49 | FFCP PHASE2:Hg19::chr15:83330983..83330997,-#_4322218d936b678ecae90338a89237b8 | p10@AP3B2 |
| 1.24e-49 | FFCP PHASE1:Hg19::chr15:83330983..83330997,-#_4322218d936b678ecae90338a89237b8 | p10@AP3B2 |
| 1.73e-49 | FFCP PHASE1:Hg19::chr11:111896671..111896691,+#_bd091bbdbbb8ea0dee3a202ff78e868e | p@chr11:111896671..111896691, + |
| 1.73e-49 | FFCP PHASE2:Hg19::chr11:111896671..111896691,+#_bd091bbdbbb8ea0dee3a202ff78e868e | p@chr11:111896671..111896691, + |
| 2.39e-49 | FFCP PHASE1:Hg19::chr12:8814756..8814767,-#_5f05a34bf586b810e09e2331c67b8d87 | p19@MFAP5 |
| 2.39e-49 | FFCP PHASE2:Hg19::chr12:8814756..8814767,-#_5f05a34bf586b810e09e2331c67b8d87 | p19@MFAP5 |
| 4.72e-49 | FFCP PHASE2:Hg19::chr19:18899276..18899289,-#_2ccf9a8bde05df8337bfa62c1e5b0b41 | p@chr19:18899276..18899289, - |
| 4.72e-49 | FFCP PHASE1:Hg19::chr19:18899276..18899289,-#_2ccf9a8bde05df8337bfa62c1e5b0b41 | p@chr19:18899276..18899289, - |
| 6.44e-49 | FFCP PHASE2:Hg19::chr13:102104738..102104747,+#_9794bb613158b6adf8d0017ce7f3da02 | p11@ITGBL1 |
| 6.44e-49 | FFCP PHASE1:Hg19::chr13:102104738..102104747,+#_9794bb613158b6adf8d0017ce7f3da02 | p11@ITGBL1 |
| 1.14e-48 | FFCP PHASE2:Hg19::chr4:88928893..88928902,+#_6e654cea6a79f81ba24b32c9f6f25b55 | p4@PKD2 |
| 1.14e-48 | FFCP PHASE1:Hg19::chr4:88928893..88928902,+#_6e654cea6a79f81ba24b32c9f6f25b55 | p4@PKD2 |
| 1.58e-48 | FFCP PHASE2:Hg19::chr6:75843119..75843139,-#_fc6656c1b440fc58124ac4cf61c17948 | p@chr6:75843119..75843139, - |
| 1.58e-48 | FFCP PHASE1:Hg19::chr6:75843119..75843139,-#_fc6656c1b440fc58124ac4cf61c17948 | p@chr6:75843119..75843139, - |
| 1.77e-48 | FFCP PHASE1:Hg19::chr8:74464406..74464424,-#_3cc536b46bb25120c3ad69b0edbbc27e | p4@STAU2 |
| 1.77e-48 | FFCP PHASE2:Hg19::chr8:74464406..74464424,-#_3cc536b46bb25120c3ad69b0edbbc27e | p4@STAU2 |
| 1.99e-48 | FFCP PHASE2:Hg19::chr19:18893611..18893635,-#_8af4ef6c2d74b273bd8d514f95cd5d35 | p1@AK094919 |
| 1.99e-48 | FFCP PHASE1:Hg19::chr19:18893611..18893635,-#_8af4ef6c2d74b273bd8d514f95cd5d35 | p1@AK094919 |
| 2.25e-48 | FFCP PHASE2:Hg19::chr7:73484184..73484197,+#_30f271f06fb5acd206d431199a38fadd | p19@ELN |
| 2.25e-48 | FFCP PHASE1:Hg19::chr7:73484184..73484197,+#_30f271f06fb5acd206d431199a38fadd | p19@ELN |
| 2.83e-48 | FFCP PHASE1:Hg19::chr3:141719209..141719215,-#_a09a97392d34c21641053d31c628a9cf | p10@TFDP2 |
| 2.83e-48 | FFCP PHASE2:Hg19::chr3:141719209..141719215,-#_a09a97392d34c21641053d31c628a9cf | p10@TFDP2 |
| 5.81e-48 | FFCP PHASE1:Hg19::chr3:112321809..112321819,-#_dfee7da6b10fba1f4db0b8fb9e42ed09 | p@chr3:112321809..112321819, - |
| 5.81e-48 | FFCP PHASE2:Hg19::chr3:112321809..112321819,-#_dfee7da6b10fba1f4db0b8fb9e42ed09 | p@chr3:112321809..112321819, - |
| 3.73e-47 | FFCP PHASE2:Hg19::chr19:18896798..18896823,-#_4140a697420943d92d3c89a89b9b75bf | p@chr19:18896798..18896823, - |
| 3.73e-47 | FFCP PHASE1:Hg19::chr19:18896798..18896823,-#_4140a697420943d92d3c89a89b9b75bf | p@chr19:18896798..18896823, - |
| 4.75e-47 | FFCP PHASE2:Hg19::chr19:18898324..18898353,+#_1ed48b101a08a66636716b188577f2c0 | p@chr19:18898324..18898353, + |
| 4.75e-47 | FFCP PHASE1:Hg19::chr19:18898324..18898353,+#_1ed48b101a08a66636716b188577f2c0 | p@chr19:18898324..18898353, + |
| 7.35e-47 | FFCP PHASE2:Hg19::chr19:38812519..38812533,-#_f5869a7aacb23a9ac43116888497595b | p@chr19:38812519..38812533, - |
| 7.35e-47 | FFCP PHASE1:Hg19::chr19:38812519..38812533,-#_f5869a7aacb23a9ac43116888497595b | p@chr19:38812519..38812533, - |
| 2.79e-46 | FFCP PHASE2:Hg19::chr7:37947092..37947121,+#_8146b045e5aebeba2cc3938fb045c31e | p2@CU691333 |
| 2.79e-46 | FFCP PHASE1:Hg19::chr7:37947092..37947121,+#_8146b045e5aebeba2cc3938fb045c31e | p2@CU691333 |
| 3.81e-46 | FFCP PHASE2:Hg19::chr19:18900850..18900868,-#_997bcde084335f0e6362ef8b85763666 | p@chr19:18900850..18900868, - |
| 3.81e-46 | FFCP PHASE1:Hg19::chr19:18900850..18900868,-#_997bcde084335f0e6362ef8b85763666 | p@chr19:18900850..18900868, - |
