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|id=CL:0000222
|id=CL:0000222
|name=mesodermal cell
|name=mesodermal cell
|namespace=efo
|namespace=cell;;efo
|def="A cell of the middle germ layer of the embryo." [MESH:A.16.254.425.660]
|def="A cell of the middle germ layer of the embryo." [MESH:A.16.254.425.660]
|xref=FMA:72554
|xref=FMA:72554
|is_a=CL:0000220;;CL:0002321
|is_a=CL:0002321
|synonym="mesoblast" EXACT [];;"mesoderm cell" EXACT []
|synonym="mesoblast" EXACT [];;"mesoderm cell" EXACT []
|comment=
|comment=
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|obo_creation_date=
|obo_creation_date=
|subset=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
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|located_in=
|located_in=
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.obo.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 17:25, 26 June 2012

Name:mesodermal cell
Namespace:cell;;efo
Definition:"A cell of the middle germ layer of the embryo." [MESH:A.16.254.425.660]
Xrefs:
links:
FMA:72554
Synonyms: "mesoblast" EXACT []
"mesoderm cell" EXACT []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0002321(embryonic cell)



Children


is a:CL:0002546 (embryonic blood vessel endothelial progenitor cell),FF:10696-109G3 (mesodermal tumor cell line:HIRS-BM)
develops from:CL:0000077 (mesothelial cell),CL:0000680 (muscle precursor cell),CL:0002078 (meso-epithelial cell),CL:0007010 (preosteoblast)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000222 (mesodermal cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.4e-74FFCP PHASE1:Mm9::chrX:160838683..160838694,+#_6b70e68c7f53c98c083b997637e0d0cep@chrX:160838683..160838694, +
2.4e-74FFCP PHASE2:Mm9::chrX:160838683..160838694,+#_6b70e68c7f53c98c083b997637e0d0cep@chrX:160838683..160838694, +
4.4e-68FFCP PHASE1:Mm9::chr1:127573795..127573810,+#_8210c5219a3ab74981e852ce6269ab9dp4@Gpr39
4.4e-68FFCP PHASE2:Mm9::chr1:127573795..127573810,+#_8210c5219a3ab74981e852ce6269ab9dp4@Gpr39
3.86e-64FFCP PHASE2:Mm9::chrX:65748600..65748616,+#_3a7b8c1335e3d4add4ac92fbdc5af87cp@chrX:65748600..65748616, +
3.86e-64FFCP PHASE2:Mm9::chr12:105433069..105433075,-#_3a7b8c1335e3d4add4ac92fbdc5af87cp@chr12:105433069..105433075, -
3.86e-64FFCP PHASE1:Mm9::chrX:65748600..65748616,+#_3a7b8c1335e3d4add4ac92fbdc5af87cp@chrX:65748600..65748616, +
3.86e-64FFCP PHASE1:Mm9::chr12:105433069..105433075,-#_3a7b8c1335e3d4add4ac92fbdc5af87cp@chr12:105433069..105433075, -
3.78e-62FFCP PHASE1:Mm9::chrX:160838787..160838800,+#_615878bcda576b3ed46480927f2fa356p@chrX:160838787..160838800, +
3.78e-62FFCP PHASE2:Mm9::chrX:160838787..160838800,+#_615878bcda576b3ed46480927f2fa356p@chrX:160838787..160838800, +
2.9e-57FFCP PHASE2:Hg19::chr8:55370720..55370733,+#_8197dc334f0ce1348e0666a8f611c2c0p2@SOX17
2.9e-57FFCP PHASE1:Hg19::chr8:55370720..55370733,+#_8197dc334f0ce1348e0666a8f611c2c0p2@SOX17
3.39e-56FFCP PHASE1:Mm9::chr11:81849982..81850000,+#_9dc2c890d2873585cf7bb3142edcee08p@chr11:81849982..81850000, +
3.39e-56FFCP PHASE2:Mm9::chr11:81849982..81850000,+#_9dc2c890d2873585cf7bb3142edcee08p@chr11:81849982..81850000, +
2.95e-54FFCP PHASE1:Hg19::chr12:96830430..96830450,+#_2da3bb185870eba26b8f8e31d6012040p@chr12:96830430..96830450, +
2.95e-54FFCP PHASE2:Hg19::chr12:96830430..96830450,+#_2da3bb185870eba26b8f8e31d6012040p@chr12:96830430..96830450, +
4.62e-52FFCP PHASE2:Mm9::chr17:14813242..14813246,-#_8d92a14aa1f86cf0ec89a016a088faebp@chr17:14813242..14813246, -
4.62e-52FFCP PHASE1:Mm9::chr17:14813242..14813246,-#_8d92a14aa1f86cf0ec89a016a088faebp@chr17:14813242..14813246, -
5.28e-50FFCP PHASE2:Mm9::chrX:160840048..160840057,+#_bb5b5fc242076358f7b6f5dc6266df86p@chrX:160840048..160840057, +
5.28e-50FFCP PHASE1:Mm9::chrX:160823859..160823870,+#_bb5b5fc242076358f7b6f5dc6266df86p@chrX:160823859..160823870, +
5.28e-50FFCP PHASE1:Mm9::chrX:160840025..160840037,+#_bb5b5fc242076358f7b6f5dc6266df86p@chrX:160840025..160840037, +
5.28e-50FFCP PHASE2:Mm9::chrX:160823859..160823870,+#_bb5b5fc242076358f7b6f5dc6266df86p@chrX:160823859..160823870, +
5.28e-50FFCP PHASE1:Mm9::chrX:160840048..160840057,+#_bb5b5fc242076358f7b6f5dc6266df86p@chrX:160840048..160840057, +
5.28e-50FFCP PHASE2:Mm9::chrX:160840025..160840037,+#_bb5b5fc242076358f7b6f5dc6266df86p@chrX:160840025..160840037, +
2.18e-47FFCP PHASE2:Hg19::chr1:21606171..21606188,-#_1d958ff00dd227690f8c76dec4afa88dp10@ECE1
2.18e-47FFCP PHASE1:Hg19::chr1:21606171..21606188,-#_1d958ff00dd227690f8c76dec4afa88dp10@ECE1
8.93e-47FFCP PHASE2:Hg19::chr5:54281512..54281517,-#_8258e48c9680e6598c21b46c75e2bb02p4@ESM1
8.93e-47FFCP PHASE1:Hg19::chr5:54281512..54281517,-#_8258e48c9680e6598c21b46c75e2bb02p4@ESM1
1.81e-45FFCP PHASE2:Hg19::chr5:54281535..54281547,-#_d7911c7579fe93655fc1e128fe88ac5bp2@ESM1
1.81e-45FFCP PHASE1:Hg19::chr5:54281535..54281547,-#_d7911c7579fe93655fc1e128fe88ac5bp2@ESM1
3.22e-45FFCP PHASE1:Mm9::chr3:79689074..79689090,+#_0ac3ae82a0a1b09ad9bd06f22219f33bp11@Fam198b
3.22e-45FFCP PHASE2:Mm9::chr3:79689074..79689090,+#_0ac3ae82a0a1b09ad9bd06f22219f33bp11@Fam198b
4.95e-45FFCP PHASE1:Mm9::chr1:127574253..127574264,+#_329f7ed949643505b8bbabfa885f5834p@chr1:127574253..127574264, +
4.95e-45FFCP PHASE2:Mm9::chr1:127574253..127574264,+#_329f7ed949643505b8bbabfa885f5834p@chr1:127574253..127574264, +
7.5e-45FFCP PHASE1:Mm9::chr1:127573733..127573745,+#_e82d4f82a36a09a3f7a9201e007c32c1p7@Gpr39
7.5e-45FFCP PHASE2:Mm9::chr1:127573733..127573745,+#_e82d4f82a36a09a3f7a9201e007c32c1p7@Gpr39
9.22e-45FFCP PHASE1:Mm9::chr1:127573690..127573699,+#_8ed286593bcead8510ac331486fc916ap11@Gpr39
9.22e-45FFCP PHASE2:Mm9::chr1:127573690..127573699,+#_8ed286593bcead8510ac331486fc916ap11@Gpr39
1.13e-44FFCP PHASE2:Mm9::chr17:78775126..78775139,+#_c3c450f114c829bf93b021ed92ea3625p@chr17:78775126..78775139, +
1.13e-44FFCP PHASE1:Mm9::chrX:160839768..160839780,+#_c3c450f114c829bf93b021ed92ea3625p@chrX:160839768..160839780, +
1.13e-44FFCP PHASE1:Mm9::chr17:78775126..78775139,+#_c3c450f114c829bf93b021ed92ea3625p@chr17:78775126..78775139, +
1.13e-44FFCP PHASE2:Mm9::chrX:160839768..160839780,+#_c3c450f114c829bf93b021ed92ea3625p@chrX:160839768..160839780, +
2.59e-44FFCP PHASE1:Mm9::chr1:127573462..127573472,+#_0cf2b2bb4fd48ff1db5e04ddeb138bf4p8@Gpr39
2.59e-44FFCP PHASE2:Mm9::chr1:127573462..127573472,+#_0cf2b2bb4fd48ff1db5e04ddeb138bf4p8@Gpr39
2.04e-43FFCP PHASE2:Hg19::chr11:128563283..128563297,-#_6c47c0ca7a946bb02ff2e6f3d4d0c77ep@chr11:128563283..128563297, -
2.04e-43FFCP PHASE1:Hg19::chr11:128563283..128563297,-#_6c47c0ca7a946bb02ff2e6f3d4d0c77ep@chr11:128563283..128563297, -
7.92e-43FFCP PHASE1:Hg19::chr7:100773764..100773799,-#_49eead8e0d2f6bb0c502dd7a4d994069p@chr7:100773764..100773799, -
7.92e-43FFCP PHASE2:Hg19::chr7:100773764..100773799,-#_49eead8e0d2f6bb0c502dd7a4d994069p@chr7:100773764..100773799, -
1.11e-42FFCP PHASE2:Hg19::chr1:186946626..186946652,+#_dd13dd1947ea9f23dd112dae5e949cc1p@chr1:186946626..186946652, +
1.11e-42FFCP PHASE1:Hg19::chr1:186946626..186946652,+#_dd13dd1947ea9f23dd112dae5e949cc1p@chr1:186946626..186946652, +
9.39e-42FFCP PHASE1:Hg19::chr16:86964992..86965035,-#_6f4624d56e97661d553a2eed6016063fp@chr16:86964992..86965035, -
9.39e-42FFCP PHASE2:Hg19::chr16:86964992..86965035,-#_6f4624d56e97661d553a2eed6016063fp@chr16:86964992..86965035, -
2.02e-41FFCP PHASE1:Hg19::chr11:128562673..128562716,-#_465004f67cde9651607aebb114b49ea1p@chr11:128562673..128562716, -
2.02e-41FFCP PHASE2:Hg19::chr11:128562673..128562716,-#_465004f67cde9651607aebb114b49ea1p@chr11:128562673..128562716, -
2.72e-41FFCP PHASE2:Mm9::chr7:96658543..96658553,-#_aee8d44ea5b076212862fae1df2a556ap@chr7:96658543..96658553, -
2.72e-41FFCP PHASE1:Mm9::chr7:96658543..96658553,-#_aee8d44ea5b076212862fae1df2a556ap@chr7:96658543..96658553, -
6.57e-41FFCP PHASE2:Hg19::chr4:10118075..10118107,-#_5ce5f2792b49035d8e3a397baf7517c7p5@WDR1
6.57e-41FFCP PHASE1:Hg19::chr4:10118075..10118107,-#_5ce5f2792b49035d8e3a397baf7517c7p5@WDR1
7.74e-41FFCP PHASE1:Hg19::chr12:105863654..105863682,+#_6c1bb820c688c19c1902e14b928cfa74p@chr12:105863654..105863682, +
7.74e-41FFCP PHASE2:Hg19::chr12:105863654..105863682,+#_6c1bb820c688c19c1902e14b928cfa74p@chr12:105863654..105863682, +
1.39e-40FFCP PHASE2:Hg19::chr4:10118034..10118074,-#_39a7e63161b40fc60610345f8e01f433p6@WDR1
1.39e-40FFCP PHASE1:Hg19::chr4:10118034..10118074,-#_39a7e63161b40fc60610345f8e01f433p6@WDR1
1.9e-40FFCP PHASE1:Hg19::chr7:100770466..100770499,+#_1501181ec66c5c929157487e96617588p2@SERPINE1
1.9e-40FFCP PHASE2:Hg19::chr7:100770466..100770499,+#_1501181ec66c5c929157487e96617588p2@SERPINE1
1.96e-40FFCP PHASE1:Hg19::chr7:100775170..100775232,+#_34d2b206a34afa4a6292f6fa83fef6a6p2@BX649164
1.96e-40FFCP PHASE2:Hg19::chr7:100775170..100775232,+#_34d2b206a34afa4a6292f6fa83fef6a6p2@BX649164
2.31e-40FFCP PHASE2:Mm9::chr7:91081998..91082010,-#_ce5728614acc07870d8df26ec7293c13p@chr7:91081998..91082010, -
2.31e-40FFCP PHASE1:Mm9::chr5:30339923..30339935,+#_ce5728614acc07870d8df26ec7293c13p2@Il6
2.31e-40FFCP PHASE2:Mm9::chr5:30339923..30339935,+#_ce5728614acc07870d8df26ec7293c13p2@Il6
2.31e-40FFCP PHASE2:Mm9::chr13:113253807..113253846,+#_ce5728614acc07870d8df26ec7293c13p4@Il6st
2.31e-40FFCP PHASE1:Mm9::chr7:91081998..91082010,-#_ce5728614acc07870d8df26ec7293c13p@chr7:91081998..91082010, -
2.31e-40FFCP PHASE1:Mm9::chr13:113253807..113253846,+#_ce5728614acc07870d8df26ec7293c13p4@Il6st
2.82e-40FFCP PHASE2:Hg19::chr6:3753188..3753192,-#_1d4f5d416d376d8874a349037b271c3cp@chr6:3753188..3753192, -
2.82e-40FFCP PHASE1:Hg19::chr6:3753188..3753192,-#_1d4f5d416d376d8874a349037b271c3cp@chr6:3753188..3753192, -
2.91e-40FFCP PHASE1:Mm9::chr10:67598037..67598049,-#_5a6384637082e6273aa43d21c10a0bcbp@chr10:67598037..67598049, -
2.91e-40FFCP PHASE2:Mm9::chr10:67598037..67598049,-#_5a6384637082e6273aa43d21c10a0bcbp@chr10:67598037..67598049, -
3.14e-40FFCP PHASE2:Hg19::chr12:105863636..105863650,+#_911028847c6f530d0495c942042d6a9cp@chr12:105863636..105863650, +
3.14e-40FFCP PHASE1:Hg19::chr12:105863636..105863650,+#_911028847c6f530d0495c942042d6a9cp@chr12:105863636..105863650, +
3.31e-40FFCP PHASE1:Hg19::chr16:128274..128286,+#_09858eb543323379947edbf75c55957dp2@MPG
3.31e-40FFCP PHASE2:Hg19::chr16:128274..128286,+#_09858eb543323379947edbf75c55957dp2@MPG
3.41e-40FFCP PHASE2:Mm9::chr18:52678391..52678395,-#_1594f3cee123ba60655cbee2ce441e5ap@chr18:52678391..52678395, -
3.41e-40FFCP PHASE1:Mm9::chr18:52678391..52678395,-#_1594f3cee123ba60655cbee2ce441e5ap@chr18:52678391..52678395, -
5.82e-40FFCP PHASE1:Mm9::chr2:65009852..65009866,-#_ab65ba67fcca45bb285cfc09935b1619p@chr2:65009852..65009866, -
5.82e-40FFCP PHASE2:Mm9::chr2:65009852..65009866,-#_ab65ba67fcca45bb285cfc09935b1619p@chr2:65009852..65009866, -
6.01e-40FFCP PHASE1:Mm9::chr15:6824301..6824306,-#_719889ee111a9c8206189462d7f52f35p5@Osmr
6.01e-40FFCP PHASE2:Mm9::chr15:6824301..6824306,-#_719889ee111a9c8206189462d7f52f35p5@Osmr
9.26e-40FFCP PHASE1:Hg19::chr7:100781252..100781342,+#_cbcdee23ff21410058742f108721edecp@chr7:100781252..100781342, +
9.26e-40FFCP PHASE2:Hg19::chr7:100781252..100781342,+#_cbcdee23ff21410058742f108721edecp@chr7:100781252..100781342, +
9.58e-40FFCP PHASE1:Hg19::chr7:100770437..100770464,+#_e4d7873c2a9e86e3fd4ba633138dbc65p3@SERPINE1
9.58e-40FFCP PHASE2:Hg19::chr7:100770437..100770464,+#_e4d7873c2a9e86e3fd4ba633138dbc65p3@SERPINE1
1.01e-39FFCP PHASE2:Hg19::chr7:100773698..100773743,+#_0f4dbfc4bf021fafc33a67592702ba6bp@chr7:100773698..100773743, +
1.01e-39FFCP PHASE1:Hg19::chr7:100773698..100773743,+#_0f4dbfc4bf021fafc33a67592702ba6bp@chr7:100773698..100773743, +
1.38e-39FFCP PHASE2:Hg19::chr5:150019857..150019868,+#_872328b560b2cc63ba89df380ad48037p18@SYNPO
1.38e-39FFCP PHASE1:Hg19::chr5:150019857..150019868,+#_872328b560b2cc63ba89df380ad48037p18@SYNPO
1.61e-39FFCP PHASE2:Mm9::chr6:91222095..91222107,+#_e313023d1abbfdcf3f6e6b1473afbf85p@chr6:91222095..91222107, +
1.61e-39FFCP PHASE1:Mm9::chr6:91222095..91222107,+#_e313023d1abbfdcf3f6e6b1473afbf85p@chr6:91222095..91222107, +
2.32e-39FFCP PHASE2:Mm9::chr5:114822634..114822665,-#_fb940b6a968e8a986970ff7e50f2baf6p9@Kctd10
2.32e-39FFCP PHASE1:Mm9::chr5:114822634..114822665,-#_fb940b6a968e8a986970ff7e50f2baf6p9@Kctd10
2.78e-39FFCP PHASE1:Mm9::chr1:127573773..127573786,+#_0a81bbb24097df97838cc1e3e0a015ccp6@Gpr39
2.78e-39FFCP PHASE2:Mm9::chr1:127573773..127573786,+#_0a81bbb24097df97838cc1e3e0a015ccp6@Gpr39

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