Personal tools

DOID:3904: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{DOID
{{DOID
|id=DOID:3904
|alt_id=
|name=bronchogenic carcinoma
|namespace=disease_ontology
|def=
|xref=MSH:D002283;;NCI:C35875;;SNOMEDCT_2010_1_31:154485001;;SNOMEDCT_2010_1_31:254622008;;SNOMEDCT_2010_1_31:269561006;;SNOMEDCT_2010_1_31:363493006;;UMLS_CUI:C0007121
|is_a=DOID:1325
|synonym="BC - Bronchogenic carcinoma" EXACT [SNOMEDCT_2005_07_31:254622008];;"bronchial cancer" EXACT [CSP2005:2017-5516];;"Bronchiogenic carcinoma" EXACT [NCI2004_11_17:C35875];;"bronchogenic carcinoma" EXACT [CSP2005:2017-6052];;"Bronchus carcinoma" EXACT [SNOMEDCT_2005_07_31:154485001];;"Bronchus carcinoma" EXACT [SNOMEDCT_2005_07_31:269561006];;"cancer of bronchus" EXACT [SNOMEDCT_2005_07_31:363493006]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:3904
|is_a=DOID:1325
|is_obsolete=
|located_in=
|located_in=
|name=bronchogenic carcinoma
|namespace=disease_ontology
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|subset=
|preceded_by=
|synonym="BC - Bronchogenic carcinoma" EXACT [SNOMEDCT_2005_07_31:254622008];;"bronchial cancer" EXACT [CSP2005:2017-5516];;"Bronchiogenic carcinoma" EXACT [NCI2004_11_17:C35875];;"bronchogenic carcinoma" EXACT [CSP2005:2017-6052];;"Bronchus carcinoma" EXACT [SNOMEDCT_2005_07_31:154485001];;"Bronchus carcinoma" EXACT [SNOMEDCT_2005_07_31:269561006];;"cancer of bronchus" EXACT [SNOMEDCT_2005_07_31:363493006]
|union_of=
|xref=MSH:D002283;;NCI:C35875;;SNOMEDCT_2010_1_31:154485001;;SNOMEDCT_2010_1_31:254622008;;SNOMEDCT_2010_1_31:269561006;;SNOMEDCT_2010_1_31:363493006;;UMLS_CUI:C0007121
}}
}}

Revision as of 10:35, 12 September 2014

Name:bronchogenic carcinoma
Namespace:disease_ontology
Xrefs:
links:

MSH:D002283
NCI:C35875
SNOMEDCT_2010_1_31:154485001
SNOMEDCT_2010_1_31:254622008
SNOMEDCT_2010_1_31:269561006
SNOMEDCT_2010_1_31:363493006

UMLS_CUI:C0007121
Synonyms: "BC - Bronchogenic carcinoma" EXACT [SNOMEDCT_2005_07_31:254622008]
"bronchial cancer" EXACT [CSP2005:2017-5516]
"Bronchiogenic carcinoma" EXACT [NCI2004_11_17:C35875]
"bronchogenic carcinoma" EXACT [CSP2005:2017-6052]
"Bronchus carcinoma" EXACT [SNOMEDCT_2005_07_31:154485001]
"Bronchus carcinoma" EXACT [SNOMEDCT_2005_07_31:269561006]
"cancer of bronchus" EXACT [SNOMEDCT_2005_07_31:363493006]

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:1325(bronchus cancer)



Children
NA

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3904 (bronchogenic carcinoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.76e-57FFCP PHASE2:Hg19::chr6:45399263..45399274,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399263..45399274, +
4.76e-57FFCP PHASE2:Hg19::chr6:125378873..125378876,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:125378873..125378876, +
4.76e-57FFCP PHASE1:Hg19::chr6:45405332..45405343,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45405332..45405343, +
4.76e-57FFCP PHASE1:Hg19::chr6:45399245..45399258,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399245..45399258, +
4.76e-57FFCP PHASE1:Hg19::chr6:45399533..45399540,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399533..45399540, +
4.76e-57FFCP PHASE2:Hg19::chr6:45399294..45399301,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399294..45399301, +
4.76e-57FFCP PHASE1:Hg19::chr6:45405393..45405412,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45405393..45405412, +
4.76e-57FFCP PHASE1:Hg19::chr6:45399263..45399274,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399263..45399274, +
4.76e-57FFCP PHASE1:Hg19::chr6:125378873..125378876,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:125378873..125378876, +
4.76e-57FFCP PHASE2:Hg19::chr6:45405332..45405343,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45405332..45405343, +
4.76e-57FFCP PHASE2:Hg19::chr6:45399245..45399258,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399245..45399258, +
4.76e-57FFCP PHASE2:Hg19::chr6:45399533..45399540,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399533..45399540, +
4.76e-57FFCP PHASE1:Hg19::chr6:45399294..45399301,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399294..45399301, +
4.76e-57FFCP PHASE2:Hg19::chr6:45405393..45405412,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45405393..45405412, +
1.49e-38FFCP PHASE1:Hg19::chr6:45399724..45399733,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:45399724..45399733, +
1.49e-38FFCP PHASE1:Hg19::chr6:73786593..73786601,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:73786593..73786601, +
1.49e-38FFCP PHASE1:Hg19::chr6:45399422..45399430,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:45399422..45399430, +
1.49e-38FFCP PHASE1:Hg19::chr6:73786620..73786627,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:73786620..73786627, +
1.49e-38FFCP PHASE2:Hg19::chr8:40525350..40525354,-#_3efaffa271a7215afa8f9beebeea155ap@chr8:40525350..40525354, -
1.49e-38FFCP PHASE2:Hg19::chr6:45399724..45399733,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:45399724..45399733, +
1.49e-38FFCP PHASE2:Hg19::chr6:73786593..73786601,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:73786593..73786601, +
1.49e-38FFCP PHASE2:Hg19::chr6:45399422..45399430,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:45399422..45399430, +
1.49e-38FFCP PHASE1:Hg19::chr8:40525350..40525354,-#_3efaffa271a7215afa8f9beebeea155ap@chr8:40525350..40525354, -
1.49e-38FFCP PHASE2:Hg19::chr6:73786620..73786627,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:73786620..73786627, +
1.8e-38FFCP PHASE2:Hg19::chr18:10085554..10085562,+#_a89e065dbffaa49eaeb69500b6779beep@chr18:10085554..10085562, +
1.8e-38FFCP PHASE1:Hg19::chr18:10085554..10085562,+#_a89e065dbffaa49eaeb69500b6779beep@chr18:10085554..10085562, +
2.18e-38FFCP PHASE2:Hg19::chr2:233352641..233352675,+#_2f810072074677b83937c1f2a5e1735bp@chr2:233352641..233352675, +
2.18e-38FFCP PHASE1:Hg19::chr2:233352641..233352675,+#_2f810072074677b83937c1f2a5e1735bp@chr2:233352641..233352675, +
1.14e-32FFCP PHASE2:Hg19::chr14:106916169..106916203,+#_0f3f47edfc78ae20205a26a9a4185251p@chr14:106916169..106916203, +
1.14e-32FFCP PHASE1:Hg19::chr14:106916169..106916203,+#_0f3f47edfc78ae20205a26a9a4185251p@chr14:106916169..106916203, +
1.78e-29FFCP PHASE2:Hg19::chr2:103235132..103235142,+#_39df5efeecaef77fad20cc2f4b578036p@chr2:103235132..103235142, +
1.78e-29FFCP PHASE2:Hg19::chr17:79974020..79974025,+#_39df5efeecaef77fad20cc2f4b578036p@chr17:79974020..79974025, +
1.78e-29FFCP PHASE2:Hg19::chr13:25269076..25269105,-#_39df5efeecaef77fad20cc2f4b578036p@chr13:25269076..25269105, -
1.78e-29FFCP PHASE2:Hg19::chr10:29213612..29213644,+#_39df5efeecaef77fad20cc2f4b578036p@chr10:29213612..29213644, +
1.78e-29FFCP PHASE1:Hg19::chrX:135761931..135761934,-#_39df5efeecaef77fad20cc2f4b578036p@chrX:135761931..135761934, -
1.78e-29FFCP PHASE1:Hg19::chr7:84390545..84390550,+#_39df5efeecaef77fad20cc2f4b578036p@chr7:84390545..84390550, +
1.78e-29FFCP PHASE1:Hg19::chr7:120379758..120379765,+#_39df5efeecaef77fad20cc2f4b578036p@chr7:120379758..120379765, +
1.78e-29FFCP PHASE2:Hg19::chr7:26482694..26482710,-#_39df5efeecaef77fad20cc2f4b578036p@chr7:26482694..26482710, -
1.78e-29FFCP PHASE2:Hg19::chr20:54101133..54101144,+#_39df5efeecaef77fad20cc2f4b578036p@chr20:54101133..54101144, +
1.78e-29FFCP PHASE2:Hg19::chr16:13010455..13010466,+#_39df5efeecaef77fad20cc2f4b578036p@chr16:13010455..13010466, +
1.78e-29FFCP PHASE1:Hg19::chr20:2779140..2779150,-#_39df5efeecaef77fad20cc2f4b578036p9@CPXM1
1.78e-29FFCP PHASE2:Hg19::chr8:97961686..97961696,-#_39df5efeecaef77fad20cc2f4b578036p@chr8:97961686..97961696, -
1.78e-29FFCP PHASE2:Hg19::chr3:102635374..102635381,-#_39df5efeecaef77fad20cc2f4b578036p@chr3:102635374..102635381, -
1.78e-29FFCP PHASE2:Hg19::chr2:23850222..23850227,+#_39df5efeecaef77fad20cc2f4b578036p@chr2:23850222..23850227, +
1.78e-29FFCP PHASE2:Hg19::chr1:33705218..33705225,-#_39df5efeecaef77fad20cc2f4b578036p@chr1:33705218..33705225, -
1.78e-29FFCP PHASE2:Hg19::chr11:98528704..98528712,+#_39df5efeecaef77fad20cc2f4b578036p@chr11:98528704..98528712, +
1.78e-29FFCP PHASE1:Hg19::chr8:100549773..100549807,-#_39df5efeecaef77fad20cc2f4b578036p@chr8:100549773..100549807, -
1.78e-29FFCP PHASE1:Hg19::chr10:129703392..129703416,+#_39df5efeecaef77fad20cc2f4b578036p@chr10:129703392..129703416, +
1.78e-29FFCP PHASE2:Hg19::chr7:79840117..79840122,+#_39df5efeecaef77fad20cc2f4b578036p@chr7:79840117..79840122, +
1.78e-29FFCP PHASE1:Hg19::chr7:26657673..26657685,-#_39df5efeecaef77fad20cc2f4b578036p@chr7:26657673..26657685, -
1.78e-29FFCP PHASE1:Hg19::chr2:135120480..135120481,+#_39df5efeecaef77fad20cc2f4b578036p@chr2:135120480..135120481, +
1.78e-29FFCP PHASE2:Hg19::chr8:38441630..38441635,+#_39df5efeecaef77fad20cc2f4b578036p@chr8:38441630..38441635, +
1.78e-29FFCP PHASE2:Hg19::chr1:168756303..168756308,+#_39df5efeecaef77fad20cc2f4b578036p1@MGC4473
1.78e-29FFCP PHASE2:Hg19::chr12:15722105..15722121,+#_39df5efeecaef77fad20cc2f4b578036p@chr12:15722105..15722121, +
1.78e-29FFCP PHASE1:Hg19::chr8:98015616..98015617,-#_39df5efeecaef77fad20cc2f4b578036p@chr8:98015616..98015617, -
1.78e-29FFCP PHASE1:Hg19::chr6:154710410..154710428,-#_39df5efeecaef77fad20cc2f4b578036p@chr6:154710410..154710428, -
1.78e-29FFCP PHASE2:Hg19::chr2:220594691..220594695,+#_39df5efeecaef77fad20cc2f4b578036p4@ENST00000442416
1.78e-29FFCP PHASE2:Hg19::chrX:97443927..97443947,+#_39df5efeecaef77fad20cc2f4b578036p@chrX:97443927..97443947, +
1.78e-29FFCP PHASE2:Hg19::chr2:91776712..91776739,+#_39df5efeecaef77fad20cc2f4b578036p@chr2:91776712..91776739, +
1.78e-29FFCP PHASE2:Hg19::chr15:97503439..97503472,+#_39df5efeecaef77fad20cc2f4b578036p@chr15:97503439..97503472, +
1.78e-29FFCP PHASE2:Hg19::chr11:69640133..69640140,+#_39df5efeecaef77fad20cc2f4b578036p@chr11:69640133..69640140, +
1.78e-29FFCP PHASE1:Hg19::chr1:168756079..168756087,+#_39df5efeecaef77fad20cc2f4b578036p3@ENST00000420691
1.78e-29FFCP PHASE1:Hg19::chr15:71685918..71685922,-#_39df5efeecaef77fad20cc2f4b578036p@chr15:71685918..71685922, -
1.78e-29FFCP PHASE2:Hg19::chr2:97626580..97626585,-#_39df5efeecaef77fad20cc2f4b578036p@chr2:97626580..97626585, -
1.78e-29FFCP PHASE2:Hg19::chr19:7834829..7834834,+#_39df5efeecaef77fad20cc2f4b578036p@chr19:7834829..7834834, +
1.78e-29FFCP PHASE2:Hg19::chr16:13010590..13010593,+#_39df5efeecaef77fad20cc2f4b578036p@chr16:13010590..13010593, +
1.78e-29FFCP PHASE2:Hg19::chr14:60194446..60194457,-#_39df5efeecaef77fad20cc2f4b578036p16@RTN1
1.78e-29FFCP PHASE1:Hg19::chr10:115999570..115999575,+#_39df5efeecaef77fad20cc2f4b578036p9@VWA2
1.78e-29FFCP PHASE1:Hg19::chr2:103235035..103235044,+#_39df5efeecaef77fad20cc2f4b578036p@chr2:103235035..103235044, +
1.78e-29FFCP PHASE2:Hg19::chr7:63539651..63539654,+#_39df5efeecaef77fad20cc2f4b578036p1@ENST00000430271
1.78e-29FFCP PHASE2:Hg19::chr3:86929211..86929219,+#_39df5efeecaef77fad20cc2f4b578036p@chr3:86929211..86929219, +
1.78e-29FFCP PHASE2:Hg19::chr2:175412075..175412078,+#_39df5efeecaef77fad20cc2f4b578036p3@uc002uix.1
1.78e-29FFCP PHASE1:Hg19::chr9:17454062..17454088,+#_39df5efeecaef77fad20cc2f4b578036p@chr9:17454062..17454088, +
1.78e-29FFCP PHASE1:Hg19::chr6:45398505..45398508,+#_39df5efeecaef77fad20cc2f4b578036p@chr6:45398505..45398508, +
1.78e-29FFCP PHASE1:Hg19::chr4:160189282..160189289,+#_39df5efeecaef77fad20cc2f4b578036p38@RAPGEF2
1.78e-29FFCP PHASE1:Hg19::chr16:13010590..13010593,+#_39df5efeecaef77fad20cc2f4b578036p@chr16:13010590..13010593, +
1.78e-29FFCP PHASE1:Hg19::chr8:97961177..97961185,-#_39df5efeecaef77fad20cc2f4b578036p@chr8:97961177..97961185, -
1.78e-29FFCP PHASE1:Hg19::chr6:141715304..141715307,+#_39df5efeecaef77fad20cc2f4b578036p@chr6:141715304..141715307, +
1.78e-29FFCP PHASE1:Hg19::chr10:36850273..36850276,-#_39df5efeecaef77fad20cc2f4b578036p@chr10:36850273..36850276, -
1.78e-29FFCP PHASE1:Hg19::chr6:17845348..17845358,-#_39df5efeecaef77fad20cc2f4b578036p@chr6:17845348..17845358, -
1.78e-29FFCP PHASE2:Hg19::chr2:97626013..97626024,+#_39df5efeecaef77fad20cc2f4b578036p@chr2:97626013..97626024, +
1.78e-29FFCP PHASE2:Hg19::chr14:59132994..59133018,+#_39df5efeecaef77fad20cc2f4b578036p@chr14:59132994..59133018, +
1.78e-29FFCP PHASE2:Hg19::chr10:65730100..65730104,-#_39df5efeecaef77fad20cc2f4b578036p@chr10:65730100..65730104, -
1.78e-29FFCP PHASE2:Hg19::chr21:16662950..16662957,-#_39df5efeecaef77fad20cc2f4b578036p@chr21:16662950..16662957, -
1.78e-29FFCP PHASE2:Hg19::chr18:37331745..37331763,-#_39df5efeecaef77fad20cc2f4b578036p@chr18:37331745..37331763, -
1.78e-29FFCP PHASE2:Hg19::chr12:65516484..65516493,-#_39df5efeecaef77fad20cc2f4b578036p@chr12:65516484..65516493, -
1.78e-29FFCP PHASE1:Hg19::chr6:39526005..39526014,-#_39df5efeecaef77fad20cc2f4b578036p@chr6:39526005..39526014, -
1.78e-29FFCP PHASE1:Hg19::chr11:42142040..42142055,+#_39df5efeecaef77fad20cc2f4b578036p@chr11:42142040..42142055, +
1.78e-29FFCP PHASE2:Hg19::chr8:98073725..98073731,-#_39df5efeecaef77fad20cc2f4b578036p@chr8:98073725..98073731, -
1.78e-29FFCP PHASE2:Hg19::chr5:28571974..28571978,-#_39df5efeecaef77fad20cc2f4b578036p@chr5:28571974..28571978, -
1.78e-29FFCP PHASE2:Hg19::chr2:241625475..241625482,+#_39df5efeecaef77fad20cc2f4b578036p8@ENST00000407635
1.78e-29FFCP PHASE2:Hg19::chr15:36739964..36739979,-#_39df5efeecaef77fad20cc2f4b578036p@chr15:36739964..36739979, -
1.78e-29FFCP PHASE1:Hg19::chr2:97626499..97626505,-#_39df5efeecaef77fad20cc2f4b578036p@chr2:97626499..97626505, -
1.78e-29FFCP PHASE1:Hg19::chr1:225650299..225650317,-#_39df5efeecaef77fad20cc2f4b578036p@chr1:225650299..225650317, -
1.78e-29FFCP PHASE2:Hg19::chr2:192805413..192805418,+#_39df5efeecaef77fad20cc2f4b578036p@chr2:192805413..192805418, +
1.78e-29FFCP PHASE2:Hg19::chr10:129704201..129704232,-#_39df5efeecaef77fad20cc2f4b578036p@chr10:129704201..129704232, -
1.78e-29FFCP PHASE1:Hg19::chr3:86703174..86703181,-#_39df5efeecaef77fad20cc2f4b578036p@chr3:86703174..86703181, -
1.78e-29FFCP PHASE1:Hg19::chr17:63528638..63528642,+#_39df5efeecaef77fad20cc2f4b578036p@chr17:63528638..63528642, +
1.78e-29FFCP PHASE2:Hg19::chr8:57526601..57526612,+#_39df5efeecaef77fad20cc2f4b578036p@chr8:57526601..57526612, +
1.78e-29FFCP PHASE2:Hg19::chr2:220607845..220607848,+#_39df5efeecaef77fad20cc2f4b578036p@chr2:220607845..220607848, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=DOID:3904&oldid=3272354"