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{{UBERON
{{UBERON
|id=UBERON:0010363
|alt_id=
|name=endochondral element
|namespace=
|def="A skeletal element that has the potential to participate in endochondral ossification, and may participate in intramembranous ossification." [VSAO:0000139]
|xref=VSAO:0000139;;XAO:0004017;;ZFA:0005620
|is_a=UBERON:0004765
|synonym="endochondral replacement element" EXACT [VSAO:0000139]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A skeletal element that has the potential to participate in endochondral ossification, and may participate in intramembranous ossification." [VSAO:0000139]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0010363
|is_a=UBERON:0004765
|is_obsolete=
|located_in=
|located_in=
|name=endochondral element
|namespace=
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="endochondral replacement element" EXACT [VSAO:0000139]
|union_of=
|xref=VSAO:0000139;;XAO:0004017;;ZFA:0005620
}}
}}

Revision as of 11:50, 12 September 2014

Name:endochondral element
Definition:"A skeletal element that has the potential to participate in endochondral ossification, and may participate in intramembranous ossification." [VSAO:0000139]
Xrefs:
links:

VSAO:0000139
XAO:0004017

ZFA:0005620
Synonyms: "endochondral replacement element" EXACT [VSAO:0000139]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004765(skeletal element)



Children

is a:UBERON:0002513 (endochondral bone),UBERON:0015005 (vertebra endochondral element),UBERON:0015061 (limb endochondral element)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010363 (endochondral element), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.4e-49FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_cc1835f878c7a62de801caaddcdd3e52p26@Myo18a
3.4e-49FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_cc1835f878c7a62de801caaddcdd3e52p26@Myo18a
4.96e-49FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_1c4674be02d6160a113f72bdfa1033c6p@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_1c4674be02d6160a113f72bdfa1033c6p@chr9:21934585..21934591, -
4.96e-49FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_1c4674be02d6160a113f72bdfa1033c6p@chr8:75097542..75097549, +
4.96e-49FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_1c4674be02d6160a113f72bdfa1033c6p@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_1c4674be02d6160a113f72bdfa1033c6p@chr8:75097542..75097549, +
4.96e-49FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_1c4674be02d6160a113f72bdfa1033c6p@chr9:21934585..21934591, -
3.15e-44FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_1c24903dd1cdd6ca6e7486fc980abcafp@chr6:51525810..51525817, +
3.15e-44FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_1c24903dd1cdd6ca6e7486fc980abcafp@chr6:51525810..51525817, +
9.78e-40FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_5037825cdd3e3a9faa2782fa03be0c74p@chr19:4876870..4876880, -
9.78e-40FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_5037825cdd3e3a9faa2782fa03be0c74p@chr19:4876870..4876880, -
1.15e-39FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_6a3a08bbcf5c1e06e48c4af03654f839p@chr6:4490674..4490679, +
1.15e-39FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_6a3a08bbcf5c1e06e48c4af03654f839p@chr11:67063327..67063335, +
1.15e-39FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_6a3a08bbcf5c1e06e48c4af03654f839p@chr16:24096441..24096449, +
1.15e-39FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_6a3a08bbcf5c1e06e48c4af03654f839p@chr1:174140324..174140335, -
1.15e-39FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_6a3a08bbcf5c1e06e48c4af03654f839p@chr1:174140324..174140335, -
1.15e-39FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_6a3a08bbcf5c1e06e48c4af03654f839p@chr11:67063327..67063335, +
1.15e-39FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_6a3a08bbcf5c1e06e48c4af03654f839p@chr16:24096441..24096449, +
1.15e-39FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_6a3a08bbcf5c1e06e48c4af03654f839p@chr6:4490674..4490679, +
1.55e-39FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_b8a4a87b614efff82dcbbd1d8069466bp@chr1:174143249..174143260, -
1.55e-39FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_b8a4a87b614efff82dcbbd1d8069466bp@chr1:174143249..174143260, -
3.03e-39FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_1ae926c3e647f528e92d9ebf3e553d3ep@chr6:51525869..51525891, +
3.03e-39FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_1ae926c3e647f528e92d9ebf3e553d3ep@chr6:51525869..51525891, +
9.31e-39FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_27f4211e31b4084a9afd70c10975e5eap3@Asb16
9.31e-39FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_27f4211e31b4084a9afd70c10975e5eap3@Asb16
2.41e-35FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_36f3e923d6f4665cbd299bd56e3d1a1dp@chr7:133604286..133604297, -
2.41e-35FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_36f3e923d6f4665cbd299bd56e3d1a1dp@chr7:133604286..133604297, -
2.95e-35FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_f0db411f69762ed63f30f7904cf5d97ap5@Pla2g5
2.95e-35FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_f0db411f69762ed63f30f7904cf5d97ap5@Pla2g5
9.53e-34FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_e79333a7baca3374960b1429a1aa0332p2@uc009mdq.1
9.53e-34FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_e79333a7baca3374960b1429a1aa0332p2@uc009mdq.1
1.23e-33FFCP PHASE2:Mm9::chr2:164773241..164773248,+#_edb5fde7bb4794d5538c85fdb6d800afp3@Mmp9
1.23e-33FFCP PHASE1:Mm9::chr2:164773241..164773248,+#_edb5fde7bb4794d5538c85fdb6d800afp3@Mmp9
1.58e-33FFCP PHASE1:Mm9::chr7:3567707..3567718,-#_8bb3b6aebbafd232dddf4f1d03bddc70p2@Oscar
1.58e-33FFCP PHASE2:Mm9::chr7:3567707..3567718,-#_8bb3b6aebbafd232dddf4f1d03bddc70p2@Oscar
1.58e-33FFCP PHASE1:Mm9::chr1:166815111..166815121,-#_8bb3b6aebbafd232dddf4f1d03bddc70p@chr1:166815111..166815121, -
1.58e-33FFCP PHASE2:Mm9::chr1:166815111..166815121,-#_8bb3b6aebbafd232dddf4f1d03bddc70p@chr1:166815111..166815121, -
2.04e-33FFCP PHASE2:Mm9::chr9:70799951..70799962,-#_f17e371edae8588868eadd8df06ffdd8p4@Lipc
2.04e-33FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_f17e371edae8588868eadd8df06ffdd8p@chr11:75409652..75409664, +
2.04e-33FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_f17e371edae8588868eadd8df06ffdd8p@chr11:75409652..75409664, +
2.04e-33FFCP PHASE1:Mm9::chr9:70799951..70799962,-#_f17e371edae8588868eadd8df06ffdd8p4@Lipc
3.38e-33FFCP PHASE2:Mm9::chr15:102196702..102196713,-#_4a4b4a2e6a678747002d7eda6dca48d8p6@Sp7
3.38e-33FFCP PHASE1:Mm9::chr15:102196702..102196713,-#_4a4b4a2e6a678747002d7eda6dca48d8p6@Sp7
7.17e-33FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_496fb7dfcfbc267273080e5897b664a5p@chr8:126415826..126415839, +
7.17e-33FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_496fb7dfcfbc267273080e5897b664a5p@chr8:126415826..126415839, +
7.17e-33FFCP PHASE1:Mm9::chr18:76271498..76271508,+#_496fb7dfcfbc267273080e5897b664a5p@chr18:76271498..76271508, +
7.17e-33FFCP PHASE2:Mm9::chr18:76271498..76271508,+#_496fb7dfcfbc267273080e5897b664a5p@chr18:76271498..76271508, +
2.67e-30FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_cb7bf9138ff75b8a0a27f4f0cefdef4dp@chr2:32482387..32482399, +
2.67e-30FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_cb7bf9138ff75b8a0a27f4f0cefdef4dp@chr2:32482387..32482399, +
1.1e-29FFCP PHASE2:Mm9::chr15:58649683..58649688,-#_cbe72835984f3fe9fa15152133617bb9p@chr15:58649683..58649688, -
1.1e-29FFCP PHASE1:Mm9::chr15:58649683..58649688,-#_cbe72835984f3fe9fa15152133617bb9p@chr15:58649683..58649688, -
1.1e-29FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_cbe72835984f3fe9fa15152133617bb9p@chr12:70396969..70396979, +
1.1e-29FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_cbe72835984f3fe9fa15152133617bb9p@chr12:70396969..70396979, +
1.46e-29FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_a9fa07c9ae999abe64b6247ee235235ep@chr7:133590998..133591009, -
1.46e-29FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_a9fa07c9ae999abe64b6247ee235235ep@chr7:133590998..133591009, -
1.73e-29FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_db684f9f56b7c4fbbf0d63bc0ed78f63p2@Myoz3
1.73e-29FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_db684f9f56b7c4fbbf0d63bc0ed78f63p2@Myoz3
2.42e-29FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_9a907da47ea01e685790b59a57028b40p2@Myh4
2.42e-29FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_9a907da47ea01e685790b59a57028b40p2@Myh4
7.46e-29FFCP PHASE1:Mm9::chr1:57155729..57155740,-#_dc8467da4e48af155c6ee3e8f3e14ad2p@chr1:57155729..57155740, -
7.46e-29FFCP PHASE2:Mm9::chr1:57155729..57155740,-#_dc8467da4e48af155c6ee3e8f3e14ad2p@chr1:57155729..57155740, -
9.26e-29FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_48983476fc11836a3101fd13a01cc559p@chr11:67056544..67056589, -
9.26e-29FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_48983476fc11836a3101fd13a01cc559p@chr11:67056544..67056589, -
9.26e-29FFCP PHASE2:Mm9::chr4:43597258..43597265,-#_48983476fc11836a3101fd13a01cc559p1@Msmp
9.26e-29FFCP PHASE1:Mm9::chr4:43597258..43597265,-#_48983476fc11836a3101fd13a01cc559p1@Msmp
1.15e-28FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_f01f6571304350b36602c5d2c3b45d53p@chr6:90552017..90552024, +
1.15e-28FFCP PHASE1:Mm9::chrY:2858251..2858257,+#_f01f6571304350b36602c5d2c3b45d53p@chrY:2858251..2858257, +
1.15e-28FFCP PHASE2:Mm9::chrY:2858251..2858257,+#_f01f6571304350b36602c5d2c3b45d53p@chrY:2858251..2858257, +
1.15e-28FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_f01f6571304350b36602c5d2c3b45d53p@chr6:90552017..90552024, +
1.43e-28FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_fe3256af1a21860c78701a2595623031p@chr6:34436258..34436292, +
1.43e-28FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_fe3256af1a21860c78701a2595623031p@chr6:34436258..34436292, +
2.2e-28FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_6a67b3499dfa52832f27400cc8d39882p@chr11:67069796..67069817, -
2.2e-28FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_6a67b3499dfa52832f27400cc8d39882p@chr11:67069796..67069817, -
2.72e-28FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_0f4dcd73485a236ad5f7b900a74fdda9p@chr8:107702369..107702386, +
2.72e-28FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_0f4dcd73485a236ad5f7b900a74fdda9p@chr8:107702369..107702386, +
3.45e-28FFCP PHASE1:Mm9::chr18:78254135..78254146,-#_80627cd4df62c22747caa9baef17cad0p1@Siglec15
3.45e-28FFCP PHASE2:Mm9::chr18:78254135..78254146,-#_80627cd4df62c22747caa9baef17cad0p1@Siglec15
6.5e-28FFCP PHASE2:Mm9::chr7:133591490..133591500,-#_27adba2abcb0a05067e0b2abaf85189dp6@Atp2a1
6.5e-28FFCP PHASE1:Mm9::chr7:133591490..133591500,-#_27adba2abcb0a05067e0b2abaf85189dp6@Atp2a1
8.9e-28FFCP PHASE2:Mm9::chr7:133591156..133591165,-#_7084e312df39daa5778076bb75c67636p7@Atp2a1
8.9e-28FFCP PHASE1:Mm9::chr7:133591156..133591165,-#_7084e312df39daa5778076bb75c67636p7@Atp2a1
1.42e-27FFCP PHASE2:Mm9::chr7:133592162..133592188,-#_1e53e63ba92d6b80bcce1769747db36ap@chr7:133592162..133592188, -
1.42e-27FFCP PHASE1:Mm9::chr7:133592162..133592188,-#_1e53e63ba92d6b80bcce1769747db36ap@chr7:133592162..133592188, -
1.42e-27FFCP PHASE2:Mm9::chr7:133600635..133600663,+#_1e53e63ba92d6b80bcce1769747db36ap@chr7:133600635..133600663, +
1.42e-27FFCP PHASE1:Mm9::chr7:133600635..133600663,+#_1e53e63ba92d6b80bcce1769747db36ap@chr7:133600635..133600663, +
6.75e-27FFCP PHASE2:Mm9::chr11:94837662..94837673,-#_076a8ad57c852194fef5c8505be9c9d7p4@Sgca
6.75e-27FFCP PHASE1:Mm9::chr11:94837662..94837673,-#_076a8ad57c852194fef5c8505be9c9d7p4@Sgca
1.66e-26FFCP PHASE1:Mm9::chr5:104754379..104754387,+#_8d1ccd1034198e7fe38482ba8d121eadp1@Mepe
1.66e-26FFCP PHASE2:Mm9::chr5:104754379..104754387,+#_8d1ccd1034198e7fe38482ba8d121eadp1@Mepe
3.47e-26FFCP PHASE2:Mm9::chr12:81581216..81581231,+#_e12b50c5f66b443f4dc69834e7d0ac71p@chr12:81581216..81581231, +
3.47e-26FFCP PHASE2:Mm9::chr16:32400888..32400899,+#_e12b50c5f66b443f4dc69834e7d0ac71p2@Tm4sf19
3.47e-26FFCP PHASE1:Mm9::chr12:81581216..81581231,+#_e12b50c5f66b443f4dc69834e7d0ac71p@chr12:81581216..81581231, +
3.47e-26FFCP PHASE1:Mm9::chr16:32400888..32400899,+#_e12b50c5f66b443f4dc69834e7d0ac71p2@Tm4sf19
1.12e-25FFCP PHASE1:Mm9::chr17:34176173..34176200,+#_e10f5851b6c8bff83fb9c787f0f02fcdp5@Col11a2
1.12e-25FFCP PHASE2:Mm9::chr17:34176173..34176200,+#_e10f5851b6c8bff83fb9c787f0f02fcdp5@Col11a2
1.12e-25FFCP PHASE1:Mm9::chr15:97806574..97806585,-#_e10f5851b6c8bff83fb9c787f0f02fcdp@chr15:97806574..97806585, -
1.12e-25FFCP PHASE2:Mm9::chr15:97806574..97806585,-#_e10f5851b6c8bff83fb9c787f0f02fcdp@chr15:97806574..97806585, -
1.36e-25FFCP PHASE1:Mm9::chr2:180890942..180890956,-#_14f1a5274b0d6a7c740e644bba2e22dap@chr2:180890942..180890956, -
1.36e-25FFCP PHASE1:Mm9::chr18:78254174..78254185,-#_14f1a5274b0d6a7c740e644bba2e22dap2@Siglec15

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