CL:0000057: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 15: | Line 15: | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from=CL:0000134 | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
Revision as of 12:59, 27 June 2012
| Name: | fibroblast | ||
|---|---|---|---|
| Namespace: | cell;;efo | ||
| Definition: | "A connective tissue cell which secretes an extracellular matrix rich in collagen and other macromolecules. Flattened and irregular in outline with branching processes; appear fusiform or spindle-shaped." ISBN:0517223651, MESH:A.11.329.228 | ||
| Xrefs: |
| ||
| Comments: | These cells may be vimentin-positive, fibronectin-positive, fsp1-positive, MMP-1-positive, collagen I-positive, collagen III-positive, and alpha-SMA-negative. |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0002320(connective tissue cell) |
|---|---|
| develops_from: | CL:0000134(mesenchymal cell) |
Children
| is a: | CL:0000005 (fibroblast neural crest derived),CL:0000632 (hepatic stellate cell),CL:0002334 (preadipocyte),CL:0002548 (cardiac fibroblast),CL:0002549 (fibroblast of choroid plexus),CL:0002550 (fibroblast of the conjuctiva),CL:0002552 (fibroblast of gingiva),CL:0002553 (lung fibroblast),CL:0002554 (fibroblast of lymphatic vessel),CL:0002555 (fibroblast of mammary gland),CL:0002556 (fibroblast of periodontium),CL:0002557 (fibroblast of pulmonary artery),CL:0002558 (fibroblast of villous mesenchyme),CL:0002620 (skin fibroblast),CL:1000306 (fibroblast of tunica adventitia of artery) |
|---|---|
| derives from: | FF:0000057 (fibroblast sample),FF:0000107 (mouse embryonic fibroblast sample),FF:0100453 (fibroblast cell line sample) |
| develops from: | CL:0000135 (fibrocyte) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10446-106F5
- 10521-107E8
- 10522-107E9
- 10575-108B8
- 10576-108B9
- 10577-108C1
- 10578-108C2
- 10579-108C3
- 10580-108C4
- 10581-108C5
... further results Mouse (Mus musculus)
- 10446-106F5
- 10521-107E8
- 10522-107E9
- 10575-108B8
- 10576-108B9
- 10577-108C1
- 10578-108C2
- 10579-108C3
- 10580-108C4
- 10581-108C5
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000057 (fibroblast), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:15914532..15914535,+#_b3a45416708d7941f5fd9feda8878cf3 | p@chr17:15914532..15914535, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr4:50498164..50498166,+#_b3a45416708d7941f5fd9feda8878cf3 | p@chr4:50498164..50498166, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chrX:45409736..45409738,+#_b3a45416708d7941f5fd9feda8878cf3 | p@chrX:45409736..45409738, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr4:61715146..61715151,-#_b3a45416708d7941f5fd9feda8878cf3 | p1@Mup20 |
| 3.07e-86 | FFCP PHASE2:Mm9::chr2:156282978..156282979,+#_b3a45416708d7941f5fd9feda8878cf3 | p@chr2:156282978..156282979, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:15914532..15914535,+#_b3a45416708d7941f5fd9feda8878cf3 | p@chr17:15914532..15914535, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr2:156282978..156282979,+#_b3a45416708d7941f5fd9feda8878cf3 | p@chr2:156282978..156282979, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chrX:45409736..45409738,+#_b3a45416708d7941f5fd9feda8878cf3 | p@chrX:45409736..45409738, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr10:94173889..94173890,-#_b3a45416708d7941f5fd9feda8878cf3 | p@chr10:94173889..94173890, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr4:50498164..50498166,+#_b3a45416708d7941f5fd9feda8878cf3 | p@chr4:50498164..50498166, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr10:94173889..94173890,-#_b3a45416708d7941f5fd9feda8878cf3 | p@chr10:94173889..94173890, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr4:61715146..61715151,-#_b3a45416708d7941f5fd9feda8878cf3 | p1@Mup20 |
| 8.69e-51 | FFCP PHASE2:Hg19::chr14:92413727..92413738,-#_652b2b5d8eeceb5aa07b63a8f14b7540 | p7@FBLN5 |
| 8.69e-51 | FFCP PHASE1:Hg19::chr14:92413727..92413738,-#_652b2b5d8eeceb5aa07b63a8f14b7540 | p7@FBLN5 |
| 4.89e-45 | FFCP PHASE1:Hg19::chr1:161167199..161167216,+#_2f5eb83338e022f6601eab4dc43b5c2b | p2@NDUFS2 |
| 4.89e-45 | FFCP PHASE2:Hg19::chr1:161167199..161167216,+#_2f5eb83338e022f6601eab4dc43b5c2b | p2@NDUFS2 |
| 8.65e-45 | FFCP PHASE2:Hg19::chr15:80842610..80842647,-#_6316da597d2c1f5fb15d60f3b7f2a43a | p@chr15:80842610..80842647, - |
| 8.65e-45 | FFCP PHASE1:Hg19::chr15:80842610..80842647,-#_6316da597d2c1f5fb15d60f3b7f2a43a | p@chr15:80842610..80842647, - |
| 8.96e-45 | FFCP PHASE2:Hg19::chr1:240408577..240408596,+#_6f500911c77d07461f3034c8ac5aafc3 | p4@FMN2 |
| 8.96e-45 | FFCP PHASE1:Hg19::chr1:240408577..240408596,+#_6f500911c77d07461f3034c8ac5aafc3 | p4@FMN2 |
| 4.22e-44 | FFCP PHASE1:Hg19::chr6:148593425..148593498,+#_9d2ffcdd1a3e9ec1ad43bfc0ff70c447 | p2@SASH1 |
| 4.22e-44 | FFCP PHASE2:Hg19::chr6:148593425..148593498,+#_9d2ffcdd1a3e9ec1ad43bfc0ff70c447 | p2@SASH1 |
| 7.47e-44 | FFCP PHASE2:Mm9::chr5:114824802..114824807,+#_4b9eb53154bfec94f8733d365a8d12a9 | p@chr5:114824802..114824807, + |
| 7.47e-44 | FFCP PHASE2:Mm9::chr19:39390004..39390011,+#_4b9eb53154bfec94f8733d365a8d12a9 | p@chr19:39390004..39390011, + |
| 7.47e-44 | FFCP PHASE2:Mm9::chr7:129965112..129965151,+#_4b9eb53154bfec94f8733d365a8d12a9 | p@chr7:129965112..129965151, + |
| 7.47e-44 | FFCP PHASE1:Mm9::chr7:111614187..111614200,+#_4b9eb53154bfec94f8733d365a8d12a9 | p@chr7:111614187..111614200, + |
| 7.47e-44 | FFCP PHASE1:Mm9::chr6:31268117..31268151,-#_4b9eb53154bfec94f8733d365a8d12a9 | p@chr6:31268117..31268151, - |
| 7.47e-44 | FFCP PHASE1:Mm9::chrX:166354085..166354088,+#_4b9eb53154bfec94f8733d365a8d12a9 | p@chrX:166354085..166354088, + |
| 7.47e-44 | FFCP PHASE2:Mm9::chr7:111614187..111614200,+#_4b9eb53154bfec94f8733d365a8d12a9 | p@chr7:111614187..111614200, + |
| 7.47e-44 | FFCP PHASE2:Mm9::chr3:127483562..127483571,+#_4b9eb53154bfec94f8733d365a8d12a9 | p@chr3:127483562..127483571, + |
| 7.47e-44 | FFCP PHASE2:Mm9::chr18:38702532..38702560,+#_4b9eb53154bfec94f8733d365a8d12a9 | p@chr18:38702532..38702560, + |
| 7.47e-44 | FFCP PHASE1:Mm9::chr3:127483562..127483571,+#_4b9eb53154bfec94f8733d365a8d12a9 | p@chr3:127483562..127483571, + |
| 7.47e-44 | FFCP PHASE2:Mm9::chr11:48686060..48686062,+#_4b9eb53154bfec94f8733d365a8d12a9 | p@chr11:48686060..48686062, + |
| 7.47e-44 | FFCP PHASE1:Mm9::chr7:129965112..129965151,+#_4b9eb53154bfec94f8733d365a8d12a9 | p@chr7:129965112..129965151, + |
| 7.47e-44 | FFCP PHASE1:Mm9::chr2:35991779..35991800,-#_4b9eb53154bfec94f8733d365a8d12a9 | p7@Rbm18 |
| 7.47e-44 | FFCP PHASE1:Mm9::chr8:42092122..42092137,-#_4b9eb53154bfec94f8733d365a8d12a9 | p@chr8:42092122..42092137, - |
| 7.47e-44 | FFCP PHASE1:Mm9::chr19:39390004..39390011,+#_4b9eb53154bfec94f8733d365a8d12a9 | p@chr19:39390004..39390011, + |
| 7.47e-44 | FFCP PHASE2:Mm9::chrX:166354085..166354088,+#_4b9eb53154bfec94f8733d365a8d12a9 | p@chrX:166354085..166354088, + |
| 7.47e-44 | FFCP PHASE2:Mm9::chr2:35991779..35991800,-#_4b9eb53154bfec94f8733d365a8d12a9 | p7@Rbm18 |
| 7.47e-44 | FFCP PHASE2:Mm9::chr6:31268117..31268151,-#_4b9eb53154bfec94f8733d365a8d12a9 | p@chr6:31268117..31268151, - |
| 7.47e-44 | FFCP PHASE1:Mm9::chr5:114824802..114824807,+#_4b9eb53154bfec94f8733d365a8d12a9 | p@chr5:114824802..114824807, + |
| 7.47e-44 | FFCP PHASE2:Mm9::chr8:42092122..42092137,-#_4b9eb53154bfec94f8733d365a8d12a9 | p@chr8:42092122..42092137, - |
| 7.47e-44 | FFCP PHASE1:Mm9::chr18:38702532..38702560,+#_4b9eb53154bfec94f8733d365a8d12a9 | p@chr18:38702532..38702560, + |
| 7.47e-44 | FFCP PHASE1:Mm9::chr11:48686060..48686062,+#_4b9eb53154bfec94f8733d365a8d12a9 | p@chr11:48686060..48686062, + |
| 2.51e-41 | FFCP PHASE2:Hg19::chr15:33180498..33180522,-#_223331b813e745267822e9a9d8348dc0 | p4@FMN1 |
| 2.51e-41 | FFCP PHASE1:Hg19::chr15:33180498..33180522,-#_223331b813e745267822e9a9d8348dc0 | p4@FMN1 |
| 7.15e-41 | FFCP PHASE2:Hg19::chr14:92413677..92413688,-#_bfa6fb5186e986a4156db62616986005 | p12@FBLN5 |
| 7.15e-41 | FFCP PHASE1:Hg19::chr14:92413677..92413688,-#_bfa6fb5186e986a4156db62616986005 | p12@FBLN5 |
| 8.81e-41 | FFCP PHASE2:Hg19::chr1:215179028..215179060,+#_31f0fa2f6fe51571be4070c31c781a7d | p9@KCNK2 |
| 8.81e-41 | FFCP PHASE1:Hg19::chr1:215179028..215179060,+#_31f0fa2f6fe51571be4070c31c781a7d | p9@KCNK2 |
| 3.67e-40 | FFCP PHASE1:Hg19::chr1:215178636..215178662,+#_9283ec5782d941e7579bf126f7d62d3e | p5@KCNK2 |
| 3.67e-40 | FFCP PHASE2:Hg19::chr1:215178636..215178662,+#_9283ec5782d941e7579bf126f7d62d3e | p5@KCNK2 |
| 4.28e-38 | FFCP PHASE1:Hg19::chr19:10928326..10928342,-#_f6e700b9aee4b1563bdd0fe0360c6ac8 | p1@MIR199A1 |
| 4.28e-38 | FFCP PHASE2:Hg19::chr19:10928326..10928342,-#_f6e700b9aee4b1563bdd0fe0360c6ac8 | p1@MIR199A1 |
| 6.13e-38 | FFCP PHASE2:Hg19::chr18:52969844..52969895,-#_5ce9506676de1d63c543c4032228d6d6 | p27@TCF4 |
| 6.13e-38 | FFCP PHASE1:Hg19::chr18:52969844..52969895,-#_5ce9506676de1d63c543c4032228d6d6 | p27@TCF4 |
| 1.61e-37 | FFCP PHASE2:Hg19::chr15:81201549..81201567,+#_50583cd4c438ca9abe78181fe26a438f | p2@KIAA1199 |
| 1.61e-37 | FFCP PHASE1:Hg19::chr15:81201549..81201567,+#_50583cd4c438ca9abe78181fe26a438f | p2@KIAA1199 |
| 2.86e-37 | FFCP PHASE2:Hg19::chr12:78334695..78334719,+#_c4e272da707ff320324de8bf7bb90388 | p@chr12:78334695..78334719, + |
| 2.86e-37 | FFCP PHASE1:Hg19::chr12:78334695..78334719,+#_c4e272da707ff320324de8bf7bb90388 | p@chr12:78334695..78334719, + |
| 4.22e-37 | FFCP PHASE2:Hg19::chr13:45289884..45289918,-#_6d5f155b5b500bb3b2168c4a42520658 | p@chr13:45289884..45289918, - |
| 4.22e-37 | FFCP PHASE1:Hg19::chr13:45289884..45289918,-#_6d5f155b5b500bb3b2168c4a42520658 | p@chr13:45289884..45289918, - |
| 6.18e-37 | FFCP PHASE1:Hg19::chr2:239756536..239756564,-#_45acdc479bc4426efea8a871454678ef | p1@BC143627 |
| 6.18e-37 | FFCP PHASE2:Hg19::chr2:239756536..239756564,-#_45acdc479bc4426efea8a871454678ef | p1@BC143627 |
| 6.63e-37 | FFCP PHASE1:Hg19::chr1:215178944..215178967,+#_674e775e220d0a8c4de58f42516654d7 | p11@KCNK2 |
| 6.63e-37 | FFCP PHASE2:Hg19::chr1:215178944..215178967,+#_674e775e220d0a8c4de58f42516654d7 | p11@KCNK2 |
| 6.76e-37 | FFCP PHASE2:Hg19::chr14:92413764..92413794,-#_76a3e271fc520aa8c9a22ea0cb99c519 | p2@FBLN5 |
| 6.76e-37 | FFCP PHASE1:Hg19::chr14:92413764..92413794,-#_76a3e271fc520aa8c9a22ea0cb99c519 | p2@FBLN5 |
| 1.13e-36 | FFCP PHASE1:Hg19::chr12:108991778..108991800,-#_31f1533ce9eaeed933486287845d2b19 | p2@TMEM119 |
| 1.13e-36 | FFCP PHASE2:Hg19::chr12:108991778..108991800,-#_31f1533ce9eaeed933486287845d2b19 | p2@TMEM119 |
| 1.92e-36 | FFCP PHASE1:Hg19::chr6:52441791..52441804,-#_514bb67a6e856f84efa086406221fc02 | p3@TRAM2 |
| 1.92e-36 | FFCP PHASE2:Hg19::chr6:52441791..52441804,-#_514bb67a6e856f84efa086406221fc02 | p3@TRAM2 |
| 3.45e-36 | FFCP PHASE2:Hg19::chr6:52441770..52441784,-#_1b8a4a599ed128c36fe0d6cae49ef512 | p2@TRAM2 |
| 3.45e-36 | FFCP PHASE1:Hg19::chr6:52441770..52441784,-#_1b8a4a599ed128c36fe0d6cae49ef512 | p2@TRAM2 |
| 4.74e-36 | FFCP PHASE2:Hg19::chr2:238322983..238323006,-#_3a32d70f20211eb08b0a7d38d336fc29 | p4@COL6A3 |
| 4.74e-36 | FFCP PHASE1:Hg19::chr2:238322983..238323006,-#_3a32d70f20211eb08b0a7d38d336fc29 | p4@COL6A3 |
| 5.54e-36 | FFCP PHASE2:Hg19::chr21:47518695..47518709,+#_d530f61b9a748918517003c9480626ba | p6@COL6A2 |
| 5.54e-36 | FFCP PHASE1:Hg19::chr21:47518695..47518709,+#_d530f61b9a748918517003c9480626ba | p6@COL6A2 |
| 1.05e-35 | FFCP PHASE1:Hg19::chr19:50031567..50031632,+#_125dc473df089cf4efe37ca0de76efa8 | p2@RCN3 |
| 1.05e-35 | FFCP PHASE2:Hg19::chr19:50031567..50031632,+#_125dc473df089cf4efe37ca0de76efa8 | p2@RCN3 |
| 2.16e-35 | FFCP PHASE1:Hg19::chr15:39410918..39410942,-#_b7861d091c45516728a2d7ae943b212a | p1@ENST00000560197 |
| 2.16e-35 | FFCP PHASE2:Hg19::chr15:39410918..39410942,-#_b7861d091c45516728a2d7ae943b212a | p1@ENST00000560197 |
| 2.63e-35 | FFCP PHASE1:Hg19::chr1:198636258..198636278,-#_914826195842a37f1825d32f0cc6639d | p1@ENST00000413577 |
| 2.63e-35 | FFCP PHASE2:Hg19::chr1:198636258..198636278,-#_914826195842a37f1825d32f0cc6639d | p1@ENST00000413577 |
| 3.83e-35 | FFCP PHASE2:Hg19::chr2:239756739..239756755,+#_de1acb1908db33af4757fb4c84aee10c | p2@TWIST2 |
| 3.83e-35 | FFCP PHASE1:Hg19::chr2:239756739..239756755,+#_de1acb1908db33af4757fb4c84aee10c | p2@TWIST2 |
| 6.05e-35 | FFCP PHASE2:Hg19::chr14:92413748..92413762,-#_3cf355da3268a924da3f621073a47d6a | p1@FBLN5 |
| 6.05e-35 | FFCP PHASE1:Hg19::chr14:92413748..92413762,-#_3cf355da3268a924da3f621073a47d6a | p1@FBLN5 |
| 7.69e-35 | FFCP PHASE1:Hg19::chr7:135433488..135433499,-#_26f051acefa60761b55e866e39ab9808 | p2@FAM180A |
| 7.69e-35 | FFCP PHASE2:Hg19::chr7:135433488..135433499,-#_26f051acefa60761b55e866e39ab9808 | p2@FAM180A |
| 8.37e-35 | FFCP PHASE2:Hg19::chr2:238289803..238289845,-#_23a23247f02f5503ea6c21917ed87422 | p@chr2:238289803..238289845, - |
| 8.37e-35 | FFCP PHASE1:Hg19::chr2:238289803..238289845,-#_23a23247f02f5503ea6c21917ed87422 | p@chr2:238289803..238289845, - |
| 1.04e-34 | FFCP PHASE2:Hg19::chr9:132461010..132461045,+#_2e24cf9d35dfe8c7fcab876885a1abe1 | p@chr9:132461010..132461045, + |
| 1.04e-34 | FFCP PHASE1:Hg19::chr9:132461010..132461045,+#_2e24cf9d35dfe8c7fcab876885a1abe1 | p@chr9:132461010..132461045, + |
| 1.22e-34 | FFCP PHASE2:Hg19::chr11:35547572..35547588,-#_456bb89cc8a0ecb1813d433e6a85f10e | p3@PAMR1 |
| 1.22e-34 | FFCP PHASE1:Hg19::chr11:35547572..35547588,-#_456bb89cc8a0ecb1813d433e6a85f10e | p3@PAMR1 |
| 1.75e-34 | FFCP PHASE2:Hg19::chr17:78808278..78808309,-#_8983870ba71748727843959ecc883884 | p@chr17:78808278..78808309, - |
| 1.75e-34 | FFCP PHASE1:Hg19::chr17:78808278..78808309,-#_8983870ba71748727843959ecc883884 | p@chr17:78808278..78808309, - |
| 1.82e-34 | FFCP PHASE2:Hg19::chr11:66082890..66082979,+#_61a74ab8cb62cb6c2739c8fd01724bba | p@chr11:66082890..66082979, + |
| 1.82e-34 | FFCP PHASE1:Hg19::chr11:66082890..66082979,+#_61a74ab8cb62cb6c2739c8fd01724bba | p@chr11:66082890..66082979, + |
