FF:1390-42D2: Difference between revisions

Revision as of 00:07, 10 July 2012

Name:	heart, neonate N30
Species:	Mouse (Mus musculus)
Library ID:	{{{library_id}}}
Sample type:	{{{sample_category}}}
Genomic View:	UCSC
CAGEd-oPOSSUM:	link

Additional information

Sample information

strain	C57BL/6J
tissue	heart
dev stage	30 days neonate
sex	mixture
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

Download raw sequence, BAM & CTSS

Mm9

BAM	CTSS
[{{{mm9bam}}} download]	[{{{mm9ctss}}} donwload]

Mm10

BAM	CTSS
[{{{mm10bam}}} download]	[{{{mm10ctss}}} donwload]

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs11202

0	0
1	0
10	0.848
100	0
1000	0.733
1001	0.667
1002	-0.039
1003	0.0655
1004	0
1005	0
1006	0.656
1007	-0.0785
1008	0
1009	0.287
101	-0.126
1010	0
1011	-0.0604
1012	0.0547
1013	-0.112
1014	-0.0383
1015	-0.164
1016	-0.0438
1017	0
1018	0
1019	0
102	0
1020	0
1021	0
1022	0.916
1023	0
1024	0.633
1025	0
1026	0.147
1027	0
1028	0
1029	-0.029
103	0
1030	0.0547
1031	0.0537
1032	0.145
1033	-0.0118
1034	0
1035	0.317
1036	-0.401
1037	0
1038	0.202
1039	0.791
104	0
1040	0.21
1041	0.187

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data no result for this sample

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11202

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.327
MA0003.1	MA0003.1	0.278
MA0004.1	MA0004.1	0.0711
MA0006.1	MA0006.1	0.121
MA0007.1	MA0007.1	0.465
MA0009.1	MA0009.1	0.786
MA0014.1	MA0014.1	0.55
MA0017.1	MA0017.1	0.907
MA0018.2	MA0018.2	0.254
MA0019.1	MA0019.1	0.206
MA0024.1	MA0024.1	1.68837e-5
MA0025.1	MA0025.1	0.0251
MA0027.1	MA0027.1	0.952
MA0028.1	MA0028.1	0.00944
MA0029.1	MA0029.1	0.815
MA0030.1	MA0030.1	0.571
MA0031.1	MA0031.1	0.141
MA0035.2	MA0035.2	9.76753e-8
MA0038.1	MA0038.1	0.742
MA0039.2	MA0039.2	0.172
MA0040.1	MA0040.1	0.811
MA0041.1	MA0041.1	0.96
MA0042.1	MA0042.1	0.753
MA0043.1	MA0043.1	0.571
MA0046.1	MA0046.1	2.83545e-15
MA0047.2	MA0047.2	0.26
MA0048.1	MA0048.1	0.49
MA0050.1	MA0050.1	0.169
MA0051.1	MA0051.1	0.0257
MA0052.1	MA0052.1	2.41372e-62
MA0055.1	MA0055.1	0.469
MA0057.1	MA0057.1	0.642
MA0058.1	MA0058.1	0.0396
MA0059.1	MA0059.1	0.0189
MA0060.1	MA0060.1	1.95587e-7
MA0061.1	MA0061.1	0.76
MA0062.2	MA0062.2	2.40375e-6
MA0065.2	MA0065.2	0.00686
MA0066.1	MA0066.1	0.998
MA0067.1	MA0067.1	0.75
MA0068.1	MA0068.1	0.562
MA0069.1	MA0069.1	0.295
MA0070.1	MA0070.1	0.449
MA0071.1	MA0071.1	3.15288e-4
MA0072.1	MA0072.1	0.209
MA0073.1	MA0073.1	0.563
MA0074.1	MA0074.1	0.138
MA0076.1	MA0076.1	8.11758e-4
MA0077.1	MA0077.1	0.983
MA0078.1	MA0078.1	0.284
MA0079.2	MA0079.2	0.0471
MA0080.2	MA0080.2	0.0427
MA0081.1	MA0081.1	0.903
MA0083.1	MA0083.1	6.5391e-10
MA0084.1	MA0084.1	0.982
MA0087.1	MA0087.1	0.281
MA0088.1	MA0088.1	0.946
MA0090.1	MA0090.1	1.30313e-5
MA0091.1	MA0091.1	0.757
MA0092.1	MA0092.1	0.255
MA0093.1	MA0093.1	0.0504
MA0099.2	MA0099.2	0.327
MA0100.1	MA0100.1	0.0375
MA0101.1	MA0101.1	0.677
MA0102.2	MA0102.2	0.256
MA0103.1	MA0103.1	0.00198
MA0104.2	MA0104.2	0.00613
MA0105.1	MA0105.1	0.597
MA0106.1	MA0106.1	0.518
MA0107.1	MA0107.1	0.869
MA0108.2	MA0108.2	0.158
MA0111.1	MA0111.1	0.928
MA0112.2	MA0112.2	2.05695e-5
MA0113.1	MA0113.1	0.0547
MA0114.1	MA0114.1	0.733
MA0115.1	MA0115.1	0.201
MA0116.1	MA0116.1	0.243
MA0117.1	MA0117.1	0.51
MA0119.1	MA0119.1	0.0818
MA0122.1	MA0122.1	0.0259
MA0124.1	MA0124.1	0.398
MA0125.1	MA0125.1	0.643
MA0131.1	MA0131.1	0.24
MA0135.1	MA0135.1	0.752
MA0136.1	MA0136.1	0.00123
MA0137.2	MA0137.2	0.373
MA0138.2	MA0138.2	0.00613
MA0139.1	MA0139.1	0.76
MA0140.1	MA0140.1	5.0249e-4
MA0141.1	MA0141.1	4.34077e-9
MA0142.1	MA0142.1	0.0509
MA0143.1	MA0143.1	0.163
MA0144.1	MA0144.1	0.377
MA0145.1	MA0145.1	0.0337
MA0146.1	MA0146.1	0.0135
MA0147.1	MA0147.1	0.00794
MA0148.1	MA0148.1	0.395
MA0149.1	MA0149.1	0.607
MA0150.1	MA0150.1	0.00838
MA0152.1	MA0152.1	0.333
MA0153.1	MA0153.1	1.05449e-9
MA0154.1	MA0154.1	0.0259
MA0155.1	MA0155.1	0.368
MA0156.1	MA0156.1	0.0226
MA0157.1	MA0157.1	0.0338
MA0159.1	MA0159.1	1.28034e-6
MA0160.1	MA0160.1	3.38247e-6
MA0162.1	MA0162.1	0.147
MA0163.1	MA0163.1	0.842
MA0164.1	MA0164.1	0.161
MA0258.1	MA0258.1	0.0038
MA0259.1	MA0259.1	0.099

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11202

Novel motif	Logo	P-value
1	1	0.213
10	10	0.626
100	100	0.698
101	101	0.571
102	102	0.958
103	103	0.661
104	104	0.508
105	105	0.098
106	106	0.161
107	107	0.173
108	108	0.9
109	109	0.23
11	11	0.432
110	110	0.249
111	111	0.258
112	112	0.867
113	113	0.853
114	114	0.127
115	115	0.933
116	116	0.811
117	117	0.778
118	118	0.758
119	119	0.122
12	12	0.769
120	120	0.07
121	121	0.0333
122	122	0.972
123	123	0.446
124	124	0.484
125	125	0.743
126	126	0.679
127	127	0.322
128	128	0.608
129	129	0.148
13	13	6.17536e-4
130	130	0.77
131	131	0.433
132	132	0.702
133	133	0.792
134	134	0.617
135	135	0.93
136	136	0.888
137	137	0.315
138	138	0.249
139	139	0.245
14	14	0.102
140	140	0.742
141	141	0.504
142	142	0.852
143	143	0.147
144	144	0.42
145	145	0.468
146	146	0.443
147	147	0.82
148	148	0.313
149	149	8.49759e-4
15	15	0.245
150	150	0.604
151	151	0.293
152	152	0.03
153	153	0.76
154	154	0.95
155	155	0.0386
156	156	0.0451
157	157	0.842
158	158	0.0894
159	159	0.328
160	160	0.248
161	161	0.762
162	162	0.827
163	163	0.123
164	164	0.401
165	165	0.00137
166	166	0.219
167	167	0.446
168	168	0.294
169	169	2.90633e-4
17	17	0.132
18	18	0.103
19	19	0.0317
2	2	0.339
20	20	0.766
21	21	0.262
22	22	0.023
23	23	0.429
24	24	0.752
25	25	0.789
26	26	0.192
27	27	0.922
28	28	0.827
29	29	0.514
3	3	0.427
30	30	0.7
31	31	0.496
32	32	0.634
33	33	0.454
34	34	0.155
35	35	0.73
36	36	0.463
37	37	0.00794
38	38	0.625
39	39	0.357
4	4	0.562
40	40	0.754
41	41	0.806
42	42	0.857
43	43	0.181
44	44	0.653
45	45	0.345
46	46	0.789
47	47	0.966
48	48	0.603
49	49	0.239
5	5	0.237
50	50	0.927
51	51	0.599
52	52	0.228
53	53	0.701
54	54	0.375
55	55	0.832
56	56	0.525
57	57	0.644
58	58	0.576
59	59	0.0482
6	6	0.087
60	60	0.127
61	61	0.93
62	62	0.609
63	63	0.104
64	64	0.822
65	65	0.427
66	66	0.216
67	67	0.487
68	68	0.802
69	69	0.0594
7	7	0.129
70	70	0.638
71	71	0.173
72	72	0.754
73	73	0.0239
74	74	0.273
75	75	0.968
76	76	0.653
77	77	0.272
78	78	0.026
79	79	0.762
8	8	0.929
80	80	0.859
81	81	0.623
82	82	0.167
83	83	0.272
84	84	0.0493
85	85	0.00281
86	86	0.617
87	87	0.459
88	88	0.891
89	89	0.0843
9	9	0.12
90	90	0.63
91	91	0.489
92	92	0.348
93	93	0.548
94	94	0.83
95	95	0.13
96	96	0.937
97	97	0.293
98	98	0.24
99	99	0.936

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11202

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011476 mouse heart- neonate N30 sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007100 (primary circulatory organ)
0000948 (heart)
0000479 (tissue)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000004 (tissue sample)
0000303 (neonate sample - mouse)
0000310 (mouse neonate N30 sample)
0011476 (mouse heart- neonate N30 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0004872 (splanchnic layer of lateral plate mesoderm)
UBERON:0004140 (primary heart field)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)

@@ Line 10: / Line 10: @@
 |def=
 |expression_enrichment_score=chr2:120365588..120365602,-!p2@Zfp106!2.11!206.95!Zfp106;;chr9:24578720..24578735,-!p1@Tbx20!2.06!114.08!Tbx20;;chr17:26978409..26978442,-!p1@Nkx2-5!1.91!79.58!Nkx2-5;;chr14:63864056..63864102,-!p1@Gata4!1.72!86.43!Gata4;;chr17:14011485..14011507,+!p2@Mllt4!1.66!44.29!Mllt4;;chr5:77543897..77543911,-!p2@Hopx!1.65!81.87!Hopx;;chr1:169548377..169548430,+!p1@Rxrg!1.64!42.68!Rxrg;;chr8:59799772..59799789,+!p1@Hand2!1.59!106.02!Hand2;;chr6:97879817..97879857,+!p2@Mitf!1.58!37.18!Mitf;;chr16:43363190..43363242,+!p2@Zbtb20!1.47!85.49!Zbtb20;;chr5:138187775..138187845,+!p7@Tsc22d4!1.37!30.46!Tsc22d4;;chr5:120285144..120285160,+!p1@Tbx5!1.36!22.01!Tbx5;;chr7:119885539..119885574,+!p3@Tead1!1.30!18.92!Tead1;;chr16:43363152..43363186,+!p3@Zbtb20!1.26!38.65!Zbtb20;;chr2:151969288..151969294,+!p1@Tcf15!1.25!25.63!Tcf15;;chr17:14011529..14011544,+!p7@Mllt4!1.14!12.88!Mllt4;;chr12:37835141..37835194,+!p1@Meox2!1.11!36.64!Meox2;;chr9:48644306..48644364,-!p1@Zbtb16!1.10!46.84!Zbtb16;;chr5:135582751..135582788,+!p1@Mlxipl!1.09!45.90!Mlxipl;;chr15:85566184..85566238,+!p1@Ppara!1.09!16.91!Ppara;;chr17:14011545..14011564,+!p6@Mllt4!1.09!11.27!Mllt4;;chr5:138199361..138199441,+!p2@Tsc22d4!1.08!21.07!Tsc22d4;;chr11:96690797..96690813,-!p1@Nfe2l1!1.05!195.14!Nfe2l1;;chr11:101755669..101755686,-!p1@Meox1!1.05!18.65!Meox1;;chr18:11052642..11052659,+!p1@Gata6!1.04!51.00!Gata6;;chr9:96159147..96159204,+!p2@Tfdp2!1.03!18.52!Tfdp2;;chr5:120285161..120285176,+!p2@Tbx5!1.03!9.80!Tbx5;;chr14:64562503..64562524,+!p1@Sox7!1.02!56.90!Sox7;;chr11:96690779..96690790,-!p3@Nfe2l1!1.00!22.14!Nfe2l1;;chr10:22539932..22539956,-!p1@Tcf21!0.98!23.49!Tcf21;;chr9:48644037..48644067,-!p2@Zbtb16!0.98!22.01!Zbtb16;;chr7:19946556..19946611,+!p1@Ppp1r13l!0.97!33.69!Ppp1r13l;;chr13:73397958..73397994,+!p1@Irx4!0.97!8.32!Irx4;;chr6:90412582..90412601,+!p1@Klf15!0.95!38.52!Klf15;;chr8:94325321..94325366,-!p1@Irx3!0.91!17.98!Irx3;;chr1:191994550..191994623,-!p1@Prox1!0.90!49.66!Prox1;;chr3:94176733..94176794,+!p1@Rorc!0.89!54.49!Rorc;;chr17:87153462..87153473,+!p3@Epas1!0.89!26.84!Epas1;;chr18:11052485..11052508,+!p2@Gata6!0.89!19.59!Gata6;;chr4:133109285..133109308,+!p1@Nr0b2!0.89!6.84!Nr0b2;;chr14:63864337..63864381,-!p6@Gata4!0.89!6.84!Gata4;;chr17:87153440..87153451,+!p4@Epas1!0.88!13.96!Epas1;;chr16:43363968..43364001,+!p7@Zbtb20!0.86!11.94!Zbtb20;;chr8:94325273..94325288,-!p5@Irx3!0.86!7.78!Irx3;;chr12:87702062..87702081,+!p4@Esrrb!0.86!6.17!Esrrb;;chr5:77524250..77524300,-!p1@Hopx!0.85!131.79!Hopx;;chr9:48644284..48644305,-!p4@Zbtb16!0.85!8.05!Zbtb16;;chr5:20387850..20387869,-!p1@Phtf2!0.84!64.28!Phtf2;;chr9:96096707..96096772,+!p1@Tfdp2!0.83!92.87!Tfdp2;;chr11:70043257..70043263,-!p1@Bcl6b!0.83!10.47!Bcl6b;;chr16:43364215..43364252,+!p14@Zbtb20!0.83!7.38!Zbtb20;;chr8:94325814..94325839,-!p2@Irx3!0.81!11.94!Irx3;;chr5:24107779..24107825,-!p1@Smarcd3!0.80!38.11!Smarcd3;;chr7:119822957..119822980,+!p2@Tead1!0.80!27.65!Tead1;;chr17:26978521..26978536,-!p2@Nkx2-5!0.80!5.37!Nkx2-5;;chr2:181406327..181406350,-!p1@Sox18!0.79!175.81!Sox18;;chr4:150482563..150482655,-!p2@Camta1!0.79!19.73!Camta1;;chr5:120285130..120285141,+!p3@Tbx5!0.79!5.23!Tbx5;;chr17:14011569..14011589,+!p8@Mllt4!0.79!5.10!Mllt4;;chr17:26978449..26978458,-!p3@Nkx2-5!0.79!5.10!Nkx2-5;;chr1:189432907..189432926,+!p3@Esrrg!0.79!5.10!Esrrg;;chr12:37835203..37835218,+!p3@Meox2!0.78!6.17!Meox2;;chr12:87702380..87702394,+!p6@Esrrb!0.78!4.97!Esrrb;;chr5:77544108..77544119,-!p7@Hopx!0.78!4.97!Hopx;;chr17:87153240..87153254,+!p1@Epas1!0.77!104.14!Epas1;;chr9:121669118..121669179,+!p1@Zfp651!0.77!57.84!Zfp651;;chr4:135840573..135840601,+!p1@Zfp46!0.77!42.68!Zfp46;;chr13:99954640..99954681,+!p1@Zfp366!0.77!19.19!Zfp366;;chr9:87626083..87626108,-!p1@Tbx18!0.77!11.41!Tbx18;;chr6:90412608..90412630,+!p2@Klf15!0.76!10.47!Klf15;;chr1:172797892..172797915,-!p1@Atf6!0.75!142.12!Atf6;;chr4:148178559..148178603,+!p1@Casz1!0.75!14.49!Casz1;;chr2:35960919..35960954,-!p1@Lhx6!0.75!9.26!Lhx6;;chr19:23215509..23215523,+!p4@Klf9!0.75!6.04!Klf9;;chr17:87153028..87153049,+!p2@Epas1!0.74!104.01!Epas1;;chr19:23215673..23215753,+!p1@Klf9!0.74!72.87!Klf9;;chr16:95680889..95680991,-!p1@Erg!0.74!40.80!Erg;;chr9:96653072..96653154,-!p1@Zbtb38!0.74!12.88!Zbtb38;;chr5:77544170..77544181,-!p6@Hopx!0.73!4.43!Hopx;;chr11:44431687..44431706,+!p2@Ebf1!0.72!22.14!Ebf1;;chr13:64253718..64253763,-!p2@Zfp367!0.72!11.94!Zfp367;;chr13:99954688..99954710,+!p2@Zfp366!0.72!8.72!Zfp366;;chr15:81633203..81633215,+!p3@Tef!0.72!6.98!Tef;;chr15:85566241..85566253,+!p6@Ppara!0.72!4.29!Ppara;;chr1:189432881..189432903,+!p2@Esrrg!0.72!4.29!Esrrg;;chr1:92895299..92895373,+!p2@Lrrfip1!0.71!97.03!Lrrfip1;;chr16:43364103..43364130,+!p30@Zbtb20!0.71!4.16!Zbtb20;;chr14:63890459..63890484,-!p4@Gata4!0.71!4.16!Gata4;;chr12:87762578..87762612,+!p1@Esrrb!0.71!4.16!Esrrb;;chr6:83299445..83299490,+!p1@Bola3!0.70!191.78!Bola3;;chr4:122911086..122911112,+!p1@Heyl!0.70!53.55!Heyl;;chr3:30408603..30408668,-!p1@Mecom!0.70!10.07!Mecom;;chr5:77543935..77543947,-!p4@Hopx!0.70!4.03!Hopx;;chr16:43364258..43364270,+!p27@Zbtb20!0.70!4.03!Zbtb20;;chr16:42907676..42907797,+!p1@Zbtb20!0.69!57.71!Zbtb20;;chr13:83712735..83712761,+!p9@Mef2c!0.69!3.89!Mef2c;;chr12:37835248..37835260,+!p4@Meox2!0.69!3.89!Meox2;;chrX:98449492..98449510,+!p1@Foxo4!0.68!45.36!Foxo4;;chr11:23670750..23670789,-!p2@Rel!0.68!7.78!Rel;;chr4:135840623..135840632,+!p5@Zfp46!0.68!5.23!Zfp46;;chr18:11052606..11052633,+!p4@Gata6!0.67!10.20!Gata6;;chr8:79426176..79426275,+!p1@Nr3c2!0.66!20.40!Nr3c2;;chr12:37835120..37835133,+!p2@Meox2!0.66!5.37!Meox2;;chr14:67853425..67853454,+!p1@Ebf2!0.66!5.37!Ebf2;;chr2:152758901..152758925,-!p1@Foxs1!0.65!17.85!Foxs1;;chr11:100683839..100683890,-!p2@Stat5b!0.65!8.99!Stat5b;;chr19:6996243..6996293,-!p1@Esrra!0.64!43.62!Esrra;;chr16:43619101..43619151,+!p6@Zbtb20!0.64!8.99!Zbtb20;;chr7:74517982..74518012,-!p2@Mef2a!0.64!6.84!Mef2a;;chr7:119822915..119822936,+!p5@Tead1!0.64!5.91!Tead1;;chr8:94325847..94325869,-!p3@Irx3!0.64!5.77!Irx3;;chr15:81633165..81633188,+!p2@Tef!0.63!31.40!Tef;;chr16:43619057..43619078,+!p8@Zbtb20!0.63!7.52!Zbtb20;;chr19:23215469..23215494,+!p2@Klf9!0.63!5.50!Klf9;;chr17:46692970..46692977,-!p5@Srf!0.63!4.70!Srf;;chr14:63890491..63890516,-!p2@Gata4!0.63!3.22!Gata4;;chr4:151235807..151235870,-!p1@Camta1!0.62!61.20!Camta1;;chr4:120488308..120488366,-!p1@Nfyc!0.62!21.61!Nfyc;;chr9:32443818..32443854,+!p2@Ets1!0.62!16.51!Ets1;;chr16:43363837..43363842,+!p11@Zbtb20!0.62!6.44!Zbtb20;;chr18:3281034..3281104,-!p1@Crem!0.61!25.90!Crem;;chr11:98636531..98636559,-!p1@Nr1d1!0.61!20.80!Nr1d1;;chr6:97757008..97757061,+!p1@Mitf!0.61!15.43!Mitf;;chr18:11052456..11052477,+!p3@Gata6!0.61!11.00!Gata6;;chr1:52176406..52176433,+!p2@Stat1!0.61!8.59!Stat1;;chr4:148178529..148178548,+!p3@Casz1!0.61!8.32!Casz1;;chr7:52963269..52963305,+!p4@Dbp!0.61!4.56!Dbp;;chr1:87546583..87546595,+!p1@Sp100!0.60!4.56!Sp100;;chr9:48644013..48644027,-!p5@Zbtb16!0.60!3.76!Zbtb16;;chr9:63514630..63514652,-!p8@Smad3!0.60!2.95!Smad3;;chr7:120351014..120351109,+!p1@Arntl!0.59!48.31!Arntl;;chr14:19071466..19071550,-!p1@Nr1d2!0.59!24.02!Nr1d2;;chr2:168415815..168415872,-!p1@Nfatc2!0.59!19.06!Nfatc2;;chr6:72849808..72849837,-!p4@Kcmf1!0.59!9.93!Kcmf1;;chr11:90252223..90252240,-!p1@Hlf!0.58!28.72!Hlf;;chr15:40486566..40486600,+!p1@Zfpm2!0.58!20.13!Zfpm2;;chr1:189821714..189821761,+!p1@Esrrg!0.58!5.77!Esrrg;;chr12:87702439..87702449,+!p14@Esrrb!0.58!2.82!Esrrb;;chr10:92773591..92773623,-!p1@Elk3!0.57!76.23!Elk3;;chr14:18493386..18493464,+!p1@Thrb!0.57!12.21!Thrb;;chr5:77524231..77524245,-!p3@Hopx!0.57!7.78!Hopx;;chr2:104966766..104966786,+!p1@Wt1!0.57!4.70!Wt1;;chr5:24107903..24107917,-!p6@Smarcd3!0.57!3.62!Smarcd3;;chr7:148452314..148452329,-!p1@Irf7!0.56!22.82!Irf7;;chr14:67853457..67853482,+!p2@Ebf2!0.56!4.03!Ebf2;;chr4:97444471..97444514,+!p1@Nfia!0.55!85.76!Nfia;;chr6:88148650..88148669,+!p1@Gata2!0.55!26.71!Gata2;;chr17:47873985..47874056,+!p1@Tfeb!0.55!25.90!Tfeb;;chr18:69753108..69753139,+!p8@Tcf4!0.55!5.77!Tcf4;;chr7:123174485..123174514,-!p6@Sox6!0.55!3.36!Sox6;;chr15:85566537..85566552,+!p2@Ppara!0.55!2.55!Ppara;;chr1:4483679..4483695,-!p1@Sox17!0.54!14.23!Sox17;;chr11:74981654..74981658,-!p1@Hic1!0.54!12.08!Hic1;;chr6:145814003..145814056,-!p1@Bhlhe41!0.54!8.59!Bhlhe41;;chr4:154010918..154010931,-!p1@Prdm16!0.54!8.59!Prdm16;;chr3:30408674..30408716,-!p2@Mecom!0.54!4.56!Mecom;;chr7:119822892..119822901,+!p7@Tead1!0.54!3.49!Tead1;;chr7:123174606..123174636,-!p5@Sox6!0.54!3.36!Sox6;;chr4:55545337..55545357,-!p1@Klf4!0.53!45.36!Klf4;;chr5:77524304..77524315,-!p5@Hopx!0.53!5.91!Hopx;;chr14:67853632..67853674,+!p3@Ebf2!0.53!3.09!Ebf2;;chr8:94325779..94325791,-!p7@Irx3!0.53!2.42!Irx3;;chr16:42907554..42907591,+!p5@Zbtb20!0.52!6.98!Zbtb20;;chr6:115310872..115310899,+!p2@Pparg!0.52!4.56!Pparg;;chr1:14746065..14746079,-!p1@Msc!0.52!2.95!Msc;;chr8:94881872..94881887,+!p2@Irx5!0.52!2.55!Irx5;;chr16:43364036..43364047,+!p28@Zbtb20!0.52!2.28!Zbtb20;;chr16:43364012..43364030,+!p22@Zbtb20!0.52!2.28!Zbtb20;;chr3:98186461..98186476,+!p2@Zfp697!0.52!2.28!Zfp697;;chr7:74517658..74517731,-!p1@Mef2a!0.51!133.54!Mef2a;;chr12:84828663..84828679,-!p1@Dpf3!0.51!22.14!Dpf3;;chr1:193961776..193961815,-!p2@Rcor3!0.51!15.03!Rcor3;;chr1:39250584..39250643,+!p1@Npas2!0.51!14.49!Npas2;;chr8:94881733..94881790,+!p1@Irx5!0.51!5.10!Irx5;;chr9:48644429..48644462,-!p3@Zbtb16!0.51!5.10!Zbtb16;;chr2:120389531..120389614,-!p1@Zfp106!0.50!214.06!Zfp106;;chr2:91035197..91035237,-!p1@Nr1h3!0.50!5.37!Nr1h3;;chr9:96619968..96619983,-!p6@Zbtb38!0.50!4.16!Zbtb38;;chr14:17408022..17408043,-!p6@Rarb!0.50!2.15!Rarb;;chr13:73397921..73397935,+!p3@Irx4!0.50!2.15!Irx4;;chr12:16817746..16817784,+!p1@E2f6!0.49!48.18!E2f6;;chr10:67599319..67599360,-!p2@Arid5b!0.49!30.87!Arid5b;;chr17:46693078..46693097,-!p3@Srf!0.49!10.87!Srf;;chr15:57526206..57526241,+!p2@Zhx2!0.49!8.72!Zhx2;;chr5:20387832..20387841,-!p2@Phtf2!0.49!4.16!Phtf2;;chr13:83663902..83663927,+!p1@Mef2c!0.48!65.49!Mef2c;;chr13:83663868..83663894,+!p2@Mef2c!0.48!39.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0!0.15!0.40!Sp100;;chr1:169528433..169528456,+!p10@Rxrg!0.15!0.40!Rxrg;;chr2:163028876..163028885,+!p7@Tox2!0.15!0.40!Tox2;;chr6:88143570..88143590,+!p4@Gata2!0.15!0.40!Gata2;;chr6:16848443..16848459,-!p3@Tfec!0.15!0.40!Tfec;;chr5:77524175..77524186,-!p8@Hopx!0.15!0.40!Hopx;;chr5:20361092..20361119,-!p4@Phtf2!0.15!0.40!Phtf2;;chr6:52133827..52133854,-!p2@Hoxa3!0.15!0.40!Hoxa3;;chr6:88148324..88148328,+!p3@Gata2!0.15!0.40!Gata2;;chr9:63869918..63869936,-!p9@Smad6!0.15!0.40!Smad6;;chr7:89137554..89137565,-!p2@Bnc1!0.15!0.40!Bnc1;;chr11:69749367..69749385,+!p4@Ybx2!0.15!0.40!Ybx2;;chr11:69749491..69749502,+!p6@Ybx2!0.15!0.40!Ybx2;;chr11:100721492..100721499,+!p5@Stat5a!0.15!0.40!Stat5a;;chr15:40486805..40486812,+!p13@Zfpm2!0.15!0.40!Zfpm2;;chr17:14011923..14011933,+!p14@Mllt4!0.15!0.40!Mllt4;;chr18:3281015..3281028,-!p18@Crem!0.15!0.40!Crem;;chr4:119486980..119486993,+!p6@Hivep3!0.15!0.40!Hivep3;;chr4:119487109..119487131,+!p4@Hivep3!0.15!0.40!Hivep3;;chr4:44723633..44723646,-!p3@Pax5!0.15!0.40!Pax5;;chr4:82145196..82145229,-!p7@Nfib!0.15!0.40!Nfib;;chr2:74543397..74543435,+!p2@Hoxd8!0.15!0.40!Hoxd8;;chr4:97444557..97444558,+!p23@Nfia!0.15!0.40!Nfia;;chr3:95238308..95238343,+!p1@Arnt!0.14!52.34!Arnt;;chr10:127080031..127080090,+!p1@Stat6!0.14!26.84!Stat6;;chr2:73730645..73730673,-!p2@Atf2,p2@LOC100047997!0.14!25.37!Atf2;;chr11:82577834..82577875,+!p1@Zfp830!0.14!24.16!Zfp830;;chr7:117205217..117205246,+!p1@Zfp143!0.14!23.62!Zfp143;;chr4:141000572..141000629,+!p1@Zbtb17!0.14!22.82!Zbtb17;;chr6:117791192..117791269,+!p1@Zfp637!0.14!19.59!Zfp637;;chr13:44826937..44826952,+!p2@Jarid2!0.14!17.04!Jarid2;;chr13:21545583..21545630,-!p1@Zfp187!0.14!15.70!Zfp187;;chr14:79880971..79880992,+!p2@Elf1!0.14!15.30!Elf1;;chr1:179372411..179372509,+!p1@Zfp238!0.14!15.03!Zfp238;;chr17:34053127..34053141,+!p1@Zbtb22!0.14!12.75!Zbtb22;;chr5:32438831..32438878,+!p1@Fosl2!0.14!12.21!Fosl2;;chr5:36826883..36826951,-!p1@Tada2b!0.14!8.72!Tada2b;;chr14:76904356..76904367,+!p3@Tsc22d1!0.14!8.32!Tsc22d1;;chr13:37917887..37917913,+!p1@Rreb1!0.14!7.52!Rreb1;;chr11:85646303..85646329,+!p1@Tbx2!0.14!7.52!Tbx2;;chr7:138554009..138554034,-!p1@Ikzf5!0.14!7.11!Ikzf5;;chr3:135354384..135354443,-!p1@Nfkb1!0.14!6.84!Nfkb1;;chr19:46379199..46379301,+!p1@Nfkb2!0.14!6.31!Nfkb2;;chr3:135354289..135354334,-!p3@Nfkb1!0.14!5.64!Nfkb1;;chr3:52072296..52072310,+!p3@Foxo1!0.14!5.50!Foxo1;;chr9:65675351..65675383,-!p1@Zfp609!0.14!5.50!Zfp609;;chr9:96620228..96620308,-!p3@Zbtb38!0.14!5.10!Zbtb38;;chr13:21545538..21545569,-!p2@Zfp187!0.14!4.97!Zfp187;;chr2:72817659..72817725,-!p5@Sp3!0.14!4.43!Sp3;;chrX:91368698..91368751,-!p2@Zfx!0.14!2.95!Zfx;;chr7:13063643..13063662,+!p2@Zfp606!0.14!2.42!Zfp606;;chr13:67229155..67229187,+!p1@Zfp759!0.14!2.28!Zfp759;;chr11:44430788..44430804,+!p3@Ebf1!0.14!2.28!Ebf1;;chr1:172797876..172797887,-!p5@Atf6!0.14!2.01!Atf6;;chr2:31428187..31428198,+!p3@Fubp3!0.14!1.74!Fubp3;;chr1:193961837..193961849,-!p3@Rcor3!0.14!1.61!Rcor3;;chr9:121668850..121668885,+!p2@Zfp651!0.14!1.48!Zfp651;;chr7:148513637..148513648,-!p6@Deaf1!0.14!1.34!Deaf1;;chr12:113917014..113917034,+!p1@Zbtb42!0.14!1.34!Zbtb42;;chr4:135700687..135700719,+!p2@Id3!0.14!1.07!Id3;;chr17:51971960..51971979,-!p1@Satb1!0.14!0.81!Satb1;;chr15:57526415..57526425,+!p7@Zhx2!0.14!0.67!Zhx2;;chr3:130815703..130815721,+!p2@Lef1!0.14!0.67!Lef1;;chr7:144505957..144505972,-!p2@Ebf3!0.14!0.67!Ebf3;;chr9:96620459..96620478,-!p9@Zbtb38!0.14!0.54!Zbtb38;;chr9:71743910..71743915,-!p7@Tcf12!0.14!0.54!Tcf12;;chr3:29912154..29912168,-!p11@Mecom!0.14!0.54!Mecom;;chr6:52663725..52663794,+!p1@Tax1bp1!0.13!183.73!Tax1bp1;;chr11:98603185..98603208,+!p1@Thra!0.13!74.08!Thra;;chr8:109817363..109817383,+!p2@Nfat5!0.13!24.83!Nfat5;;chr4:149943647..149943707,+!p2@Rere!0.13!21.20!Rere;;chr3:87329494..87329565,+!p1@Etv3!0.13!17.98!Etv3;;chr7:134758740..134758783,-!p1@Zfp629!0.13!16.91!Zfp629;;chr1:52176315..52176343,+!p1@Stat1!0.13!16.78!Stat1;;chr11:100721761..100721851,+!p1@Stat5a!0.13!8.32!Stat5a;;chr3:54611674..54611690,-!p2@Rfxap!0.13!8.19!Rfxap;;chr18:84255841..84255883,-!p1@Tshz1!0.13!7.92!Tshz1;;chr5:145992626..145992652,+!p2@Zfp655!0.13!7.78!Zfp655;;chr19:26679615..26679646,+!p3@Smarca2!0.13!7.65!Smarca2;;chr19:5637528..5637548,+!p2@Rela!0.13!6.44!Rela;;chr13:21622953..21622972,-!p2@Zfp192!0.13!6.44!Zfp192;;chrX:7339938..7339963,+!p1@Tfe3!0.13!5.37!Tfe3;;chr16:3847206..3847307,+!p1@Zfp174!0.13!5.10!Zfp174;;chr7:148513599..148513636,-!p3@Deaf1!0.13!4.03!Deaf1;;chr7:30836380..30836430,-!p1@Zfp14!0.13!3.89!Zfp14;;chr13:67274092..67274140,+!p1@Rsl1!0.13!3.62!Rsl1;;chr3:135354452..135354475,-!p5@Nfkb1!0.13!2.28!Nfkb1;;chr5:134790276..134790294,-!p7@Gtf2i!0.13!1.88!Gtf2i;;chr15:96118197..96118200,+!p3@Arid2!0.13!1.21!Arid2;;chr11:90250944..90250982,-!p2@Hlf!0.13!1.21!Hlf;;chr7:25917492..25917512,-!p1@Pou2f2!0.13!1.21!Pou2f2;;chr11:98602203..98602266,+!p4@Thra!0.13!1.07!Thra;;chr2:115890469..115890485,-!p7@Meis2!0.13!1.07!Meis2;;chr5:130175978..130175990,-!p2@Zfp11!0.13!0.94!Zfp11;;chr12:32635051..32635062,-!p2@Hbp1!0.13!0.94!Hbp1;;chr11:16952347..16952366,-!p2@Plek!0.13!0.94!Plek;;chr8:111228161..111228183,+!p@chr8:111228161..111228183,+!0.13!0.94!Zfhx3;;chr18:80904923..80904933,-!p3@Nfatc1!0.13!0.81!Nfatc1;;chr17:51971932..51971958,-!p2@Satb1!0.13!0.81!Satb1;;chr10:44178375..44178390,-!p2@Prdm1!0.13!0.81!Prdm1;;chr10:41996451..41996462,-!p5@Foxo3!0.13!0.81!Foxo3;;chr4:99322820..99322845,+!p1@Foxd3!0.13!0.67!Foxd3;;chr1:133903955..133903969,+!p10@Elk4!0.13!0.67!Elk4;;chr14:32973087..32973175,+!p1@Gm6768,p1@Ncoa4!0.12!80.93!Ncoa4;;chr10:70700783..70700832,-!p1@Tfam!0.12!44.56!Tfam;;chr15:102301149..102301221,+!p2@Pcbp2!0.12!43.89!Pcbp2;;chr12:99985145..99985256,+!p1@Zc3h14!0.12!39.46!Zc3h14;;chr2:27532754..27532815,+!p1@Rxra!0.12!33.95!Rxra;;chr2:18314363..18314465,-!p1@Dnajc1!0.12!28.59!Dnajc1;;chrX:71330925..71330991,-!p1@Mecp2!0.12!26.98!Mecp2;;chr15:81575487..81575561,+!p1@Zc3h7b!0.12!25.10!Zc3h7b;;chr7:134388025..134388092,+!p1@Zfp771!0.12!24.29!Zfp771;;chr2:17986191..17986271,+!p1@Mllt10!0.12!20.40!Mllt10;;chr15:102034070..102034124,+!p1@Zfp740!0.12!19.59!Zfp740;;chr11:18918959..18918976,-!p2@Meis1!0.12!15.57!Meis1;;chr9:55785900..55785950,-!p1@Scaper!0.12!11.41!Scaper;;chr6:140572167..140572236,+!p2@Aebp2!0.12!11.41!Aebp2;;chr10:127707602..127707633,+!p1@Stat2!0.12!9.80!Stat2;;chr7:31741761..31741800,-!p2@LOC100504922,p2@Usf2!0.12!6.71!Usf2;;chr12:100631123..100631206,-!p3@Foxn3!0.12!6.04!Foxn3;;chr19:26681929..26681987,+!p4@Smarca2!0.12!5.91!Smarca2;;chr7:25039763..25039831,+!p1@Zfp108!0.12!4.97!Zfp108;;chr2:37278526..37278575,-!p2@Rc3h2!0.12!4.16!Rc3h2;;chr18:79306158..79306249,-!p1@Setbp1!0.12!3.22!Setbp1;;chr13:42147211..42147244,+!p2@Hivep1!0.12!3.09!Hivep1;;chr9:21420610..21420621,+!p5@Smarca4!0.12!2.95!Smarca4;;chr4:45025159..45025197,-!p1@Zbtb5!0.12!2.82!Zbtb5;;chr8:108160826..108160879,+!p3@Ctcf!0.12!2.68!Ctcf;;chr8:81552216..81552249,+!p3@Zfp827!0.12!2.55!Zfp827;;chr5:139060915..139060929,-!p3@Zfp68!0.12!2.15!Zfp68;;chr1:138521574..138521597,+!p3@Zfp281!0.12!2.01!Zfp281;;chr7:4947724..4947743,-!p3@Zfp579!0.12!1.88!Zfp579;;chr1:64167811..64167826,-!p5@Klf7!0.12!1.74!Klf7;;chr6:15135456..15135520,+!p3@Foxp2!0.12!1.74!Foxp2;;chr5:145962744..145962760,-!p2@Zkscan14!0.12!1.61!Zkscan14;;chr4:87452180..87452196,-!p3@Mllt3!0.12!1.48!Mllt3;;chr18:3337465..3337498,-!p6@Crem!0.12!1.48!Crem;;chr17:3557785..3557797,-!p3@Tfb1m!0.12!1.48!Tfb1m;;chr3:54559463..54559493,+!p3@Smad9!0.12!1.34!Smad9;;chr12:113916993..113917009,+!p2@Zbtb42!0.12!1.21!Zbtb42;;chr14:100684036..100684068,-!p5@Klf12!0.12!1.21!Klf12;;chr18:14131045..14131062,-!p3@Zfp521!0.12!1.07!Zfp521;;chr5:32438395..32438406,+!p3@Fosl2!0.12!0.94!Fosl2;;chr1:165243379..165243402,-!p3@Prrx1!0.12!0.94!Prrx1;;chr2:115890953..115890974,-!p6@Meis2!0.12!0.94!Meis2;;chr8:79423144..79423178,+!p3@Nr3c2!0.12!0.81!Nr3c2;;chr2:115891680..115891701,-!p12@Meis2!0.12!0.67!Meis2;;chr16:95923586..95923598,+!p5@Ets2!0.12!0.67!Ets2;;chr3:19957878..19957885,+!p2@Hltf!0.12!0.67!Hltf;;chr13:67433434..67433446,-!p3@Zfp595!0.12!0.67!Zfp595;;chr2:90936886..90936898,+!p5@Sfpi1!0.12!0.54!Sfpi1;;chr3:128917187..128917223,+!p2@Pitx2!0.12!0.54!Pitx2;;chr1:93698068..93698085,+!p2@Twist2!0.12!0.54!Twist2;;chr5:137042233..137042245,-!p4@Cux1!0.12!0.54!Cux1;;chr11:100800621..100800633,-!p5@Stat3!0.12!0.54!Stat3;;chr8:94325446..94325459,-!p8@Irx3!0.12!0.40!Irx3;;chr1:138846047..138846074,-!p5@Nr5a2!0.12!0.40!Nr5a2;;chr6:124662297..124662371,+!p1@Phb2!0.11!229.63!Phb2;;chr7:29551488..29551529,-!p1@Nfkbib!0.11!37.31!Nfkbib;;chr5:134790507..134790546,-!p1@Gtf2i!0.11!28.05!Gtf2i;;chr6:120314112..120314181,+!p1@Kdm5a!0.11!22.01!Kdm5a;;chr8:81923316..81923334,-!p1@Smad1!0.11!17.58!Smad1;;chr8:72498160..72498214,-!p1@Gatad2a!0.11!14.49!Gatad2a;;
+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0004872,UBERON:0004140,UBERON:0010316,FF:0000294
 |fonse_cell_line=
 |fonse_cell_line_closure=

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FF:1390-42D2: Difference between revisions

From FANTOM5_SSTAR

Revision as of 00:07, 10 July 2012

CNhs11202

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0