FFCP PHASE1:Hg19::chr1:183213404..183213419,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 9: | Line 9: | ||
|ontology_enrichment_celltype=CL:0000066!9.30e-30!254;CL:0002076!2.75e-23!43;CL:0000223!1.36e-16!59;CL:0002368!3.69e-11!13;CL:0002251!4.67e-11!21;CL:0000244!1.47e-10!4;CL:0000731!1.47e-10!4;CL:0002077!1.07e-08!33;CL:0002621!3.04e-08!3;CL:0002159!3.38e-08!13;CL:0000220!2.73e-07!246;CL:0002321!3.79e-07!248 | |ontology_enrichment_celltype=CL:0000066!9.30e-30!254;CL:0002076!2.75e-23!43;CL:0000223!1.36e-16!59;CL:0002368!3.69e-11!13;CL:0002251!4.67e-11!21;CL:0000244!1.47e-10!4;CL:0000731!1.47e-10!4;CL:0002077!1.07e-08!33;CL:0002621!3.04e-08!3;CL:0002159!3.38e-08!13;CL:0000220!2.73e-07!246;CL:0002321!3.79e-07!248 | ||
|ontology_enrichment_celltype_v019=CL:0000244;6.18e-29;4!CL:0000731;6.18e-29;4!CL:0002368;1.37e-26;13!CL:0002076;5.72e-21;42!CL:0002327;1.51e-16;4!CL:0002231;5.31e-11;3!CL:0002621;1.00e-10;3!CL:0002328;2.87e-10;3!CL:0002166;2.87e-10;3!CL:0002159;2.43e-08;14!CL:0002202;1.22e-07;9!CL:0002632;1.22e-07;9!CL:0000312;9.70e-07;5 | |ontology_enrichment_celltype_v019=CL:0000244;6.18e-29;4!CL:0000731;6.18e-29;4!CL:0002368;1.37e-26;13!CL:0002076;5.72e-21;42!CL:0002327;1.51e-16;4!CL:0002231;5.31e-11;3!CL:0002621;1.00e-10;3!CL:0002328;2.87e-10;3!CL:0002166;2.87e-10;3!CL:0002159;2.43e-08;14!CL:0002202;1.22e-07;9!CL:0002632;1.22e-07;9!CL:0000312;9.70e-07;5 | ||
|ontology_enrichment_celltype_v019_2=CL:0000244,5.18e-29,4;CL:0000731,5.18e-29,4;CL:0002368,2.02e-26,13;CL:0002076,1.15e-22,42;CL:0002327,1.92e-16,4;CL:0000066,2.66e-16,253;CL:0000223,8.25e-16,58;CL:0002231,5.59e-11,3;CL:0002621,1.05e-10,3;CL:0002166,2.49e-10,3;CL:0002328,3.47e-10,3;CL:0002159,2.04e-08,14;CL:0002202,1.42e-07,9;CL:0002632,1.42e-07,9;CL:0000312,8.17e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000223;2.05e-09;58 | |ontology_enrichment_development_v019=CL:0000223;2.05e-09;58 | ||
|ontology_enrichment_disease=DOID:1749!2.13e-08!14;DOID:305!4.72e-08!106 | |ontology_enrichment_disease=DOID:1749!2.13e-08!14;DOID:305!4.72e-08!106 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!1.25e-13!169;UBERON:0000925!1.25e-13!169;UBERON:0006595!1.25e-13!169;UBERON:0005910!1.71e-13!6;UBERON:0005911!2.81e-12!82;UBERON:0000365!5.53e-12!5;UBERON:0005153!3.60e-10!37;UBERON:0001004!1.28e-09!72;UBERON:0005157!1.54e-08!51;UBERON:0001949!3.04e-08!3;UBERON:0001007!7.49e-08!155;UBERON:0001555!7.49e-08!155;UBERON:0007026!7.49e-08!155;UBERON:0000161!7.58e-07!35 | |ontology_enrichment_uberon=UBERON:0004119!1.25e-13!169;UBERON:0000925!1.25e-13!169;UBERON:0006595!1.25e-13!169;UBERON:0005910!1.71e-13!6;UBERON:0005911!2.81e-12!82;UBERON:0000365!5.53e-12!5;UBERON:0005153!3.60e-10!37;UBERON:0001004!1.28e-09!72;UBERON:0005157!1.54e-08!51;UBERON:0001949!3.04e-08!3;UBERON:0001007!7.49e-08!155;UBERON:0001555!7.49e-08!155;UBERON:0007026!7.49e-08!155;UBERON:0000161!7.58e-07!35 | ||
|ontology_enrichment_uberon_v019=UBERON:0000365;3.29e-23;5!UBERON:0000486;3.45e-21;12!UBERON:0005910;2.19e-19;6!UBERON:0001911;1.51e-16;4!UBERON:0001949;1.00e-10;3!UBERON:0004815;2.87e-10;3!UBERON:0002031;2.87e-10;3!UBERON:0005911;6.17e-09;36!UBERON:0001708;6.47e-08;4!UBERON:0008895;6.47e-08;4 | |ontology_enrichment_uberon_v019=UBERON:0000365;3.29e-23;5!UBERON:0000486;3.45e-21;12!UBERON:0005910;2.19e-19;6!UBERON:0001911;1.51e-16;4!UBERON:0001949;1.00e-10;3!UBERON:0004815;2.87e-10;3!UBERON:0002031;2.87e-10;3!UBERON:0005911;6.17e-09;36!UBERON:0001708;6.47e-08;4!UBERON:0008895;6.47e-08;4 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000365,2.86e-23,5;UBERON:0005910,1.95e-19,6;UBERON:0001911,1.92e-16,4;UBERON:0005333,1.92e-16,4;UBERON:0008425,1.92e-16,4;UBERON:0005311,1.92e-16,4;UBERON:0001949,1.05e-10,3;UBERON:0004815,3.47e-10,3;UBERON:0002031,3.47e-10,3;UBERON:0005153,1.22e-08,37;UBERON:0000076,1.74e-08,8;UBERON:0004119,2.05e-08,160;UBERON:0000925,2.05e-08,160;UBERON:0006595,2.05e-08,160;UBERON:0001004,4.40e-08,74;UBERON:0001708,5.82e-08,4;UBERON:0008895,5.82e-08,4;UBERON:0005911,4.02e-07,82 | |||
|phase1_expression=0,0,0,0,0,0,0,0.631719873426831,0,0,0,1.31064823278103,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.8072355126695,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0,0.364295288292542,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.966304265816484,2.45471508531751,2.29443676311203,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.97550513735526,0,6.23279628952111,0.462942225792648,0,0,0,0,0,0.144366447761074,0,0,0,0,0,0,0,0,1.6798212819886,1.84307626415102,1.43293636324557,2.61570544662566,1.15014803749563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.299918973546171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.713715955188647,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.41367469818869,3.03867263488458,0,0,0,0,0.15403067420883,0,0,0.422206515571503,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,2.31398881505369,3.2672311452068,6.38063562472921,2.023155617111,0,0.31481234683064,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,2.21310859268678,0,0,0.0941438007767792,1.29151611801369,3.36942951335251,1.7737206141467,2.75668080248351,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22864280839693,0,0,0,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0.568967241427498,0.508507300585533,0.236387681767936,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0.23056390438806,0.0897576444097721,0,0,0,0,0,0,0,0,0,0,0,0,1.89898258075224,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0.284609546029793,0,0,0.293977192243133,0.0870592065804026,0,0,0,0,0,0,0,0,0.137041924646751,0,0,0.195551382734803,0.160317640503067,0,0,0.288180834308212,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211200673038813,0,0.191915197319445,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0.828478110694391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.249960815924213,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219284049578707,0.176689145945881,0,0,0,0,0,0,0,0,0,0,0,0.422624246717254,0,0,0,0,0,0.139879507719444,2.48830904013189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11796972334774,0.550285795565037,0,0,0,0,0,0,0,0,0.163771917510097,0.295712172434091,0,0,0,0,0,0,0,0,0.383287282918786,0,0,0,0,0,0,0,0,0,0,0.222462803784138,0,0,0,0,0,0,0,0,0,0,0,1.86494547746733,0.6828739083758,0,0,0,0,0,0.4582137370881,0,0,0,0,0,0,0,0,0,0.233939463462106,0,0,0,0,0,0,0.218559560503957,0,0,0,0,0,0,0,0,0,0,0,1.76447435857846,0.0802413666891683,0.730336388246517,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0.342233301085281,0,0,0,0.0814032686109745,0.106727345877715,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0.631719873426831,0,0,0,1.31064823278103,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.8072355126695,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0,0.364295288292542,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.966304265816484,2.45471508531751,2.29443676311203,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.97550513735526,0,6.23279628952111,0.462942225792648,0,0,0,0,0,0.144366447761074,0,0,0,0,0,0,0,0,1.6798212819886,1.84307626415102,1.43293636324557,2.61570544662566,1.15014803749563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.299918973546171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.713715955188647,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.41367469818869,3.03867263488458,0,0,0,0,0.15403067420883,0,0,0.422206515571503,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,2.31398881505369,3.2672311452068,6.38063562472921,2.023155617111,0,0.31481234683064,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,2.21310859268678,0,0,0.0941438007767792,1.29151611801369,3.36942951335251,1.7737206141467,2.75668080248351,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22864280839693,0,0,0,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0.568967241427498,0.508507300585533,0.236387681767936,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0.23056390438806,0.0897576444097721,0,0,0,0,0,0,0,0,0,0,0,0,1.89898258075224,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0.284609546029793,0,0,0.293977192243133,0.0870592065804026,0,0,0,0,0,0,0,0,0.137041924646751,0,0,0.195551382734803,0.160317640503067,0,0,0.288180834308212,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211200673038813,0,0.191915197319445,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0.828478110694391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.249960815924213,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219284049578707,0.176689145945881,0,0,0,0,0,0,0,0,0,0,0,0.422624246717254,0,0,0,0,0,0.139879507719444,2.48830904013189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11796972334774,0.550285795565037,0,0,0,0,0,0,0,0,0.163771917510097,0.295712172434091,0,0,0,0,0,0,0,0,0.383287282918786,0,0,0,0,0,0,0,0,0,0,0.222462803784138,0,0,0,0,0,0,0,0,0,0,0,1.86494547746733,0.6828739083758,0,0,0,0,0,0.4582137370881,0,0,0,0,0,0,0,0,0,0.233939463462106,0,0,0,0,0,0,0.218559560503957,0,0,0,0,0,0,0,0,0,0,0,1.76447435857846,0.0802413666891683,0.730336388246517,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0.342233301085281,0,0,0,0.0814032686109745,0.106727345877715,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr1:183213404..183213419,+ | |short_description=p@chr1:183213404..183213419,+ | ||
}} | }} |
Revision as of 23:49, 16 November 2012
Short description: | p@chr1:183213404..183213419, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:183213404..183213419, + |
Coexpression cluster: | C362_Small_Mallassezderived_Urothelial_Gingival_Prostate_Keratinocyte_Tracheal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
transitional epithelial cell | 5.18e-29 | 4 |
urothelial cell | 5.18e-29 | 4 |
respiratory epithelial cell | 2.02e-26 | 13 |
endo-epithelial cell | 1.15e-22 | 42 |
mammary gland epithelial cell | 1.92e-16 | 4 |
epithelial cell | 2.66e-16 | 253 |
endodermal cell | 8.25e-16 | 58 |
epithelial cell of prostate | 5.59e-11 | 3 |
gingival epithelial cell | 1.05e-10 | 3 |
epithelial cell of Malassez | 2.49e-10 | 3 |
bronchial epithelial cell | 3.47e-10 | 3 |
general ecto-epithelial cell | 2.04e-08 | 14 |
epithelial cell of tracheobronchial tree | 1.42e-07 | 9 |
epithelial cell of lower respiratory tract | 1.42e-07 | 9 |
keratinocyte | 8.17e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
urothelium | 2.86e-23 | 5 |
transitional epithelium | 1.95e-19 | 6 |
mammary gland | 1.92e-16 | 4 |
mammary bud | 1.92e-16 | 4 |
mammary ridge | 1.92e-16 | 4 |
mammary placode | 1.92e-16 | 4 |
gingival epithelium | 1.05e-10 | 3 |
lower respiratory tract epithelium | 3.47e-10 | 3 |
epithelium of bronchus | 3.47e-10 | 3 |
epithelial bud | 1.22e-08 | 37 |
external ectoderm | 1.74e-08 | 8 |
endoderm-derived structure | 2.05e-08 | 160 |
endoderm | 2.05e-08 | 160 |
presumptive endoderm | 2.05e-08 | 160 |
respiratory system | 4.40e-08 | 74 |
jaw skeleton | 5.82e-08 | 4 |
splanchnocranium | 5.82e-08 | 4 |
endo-epithelium | 4.02e-07 | 82 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.