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MacroAPE 1083:CNhs11990 bl f2: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;140.75549366105164;346.77974480708934;85.75828245025794;178.81629582191272!2;194.54023004673914;276.45440299116825;84.02445736087937;197.090...")
 
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55-123G9;0.786936!11756-123H1;0.249318!11833-124G6;0.65596!11760-123H5;0.848003!11836-124G9;0.713854!11758-123H3;0.815216!11835-124G8;0.558282!11762-123H7;0.334164!11838-124H2;0.120724!11757-123H2;0.13844!11759-123H4;0.553567!11761-123H6;0.450401!11842-124H6;0.163722!11837-124H1;0.468778!10568-108B1;0.302125!13230-141I8;0.161852!13231-141I9;0.682852!10696-109G3;0.383532!10493-107B7;0.00691659!10494-107B8;0.787671!10850-111F4;0.0743223!10851-111F5;0.798318!10852-111F6;0.448382!10853-111F7;0.806292!10854-111F8;0.573322!10855-111F9;0.740558!10856-111G1;0.00839462!10847-111F1;0.401626!10846-111E9;0.926348!10848-111F2;0.837885!10845-111E8;0.813178!10857-111G2;0.985556!10858-111G3;0.852698!10156-103A3;0.133662!11901-125F2;0.0216961!11902-125F3;0.200807!11903-125F4;0.32744!10689-109F5;0.294869!10648-109A9;0.699269!10784-110H1;0.709185!10744-110C6;0.152717!10772-110F7;0.00280747!10474-106I6;0.0163512!10600-108E6;0.00761007!10684-109E9;0.952614!12226-129F3;0.0855924!12227-129F4;0.695544!10508-107D4;0.198924!10539-107G8;0.987278!10607-108F4;0.724!10555-107I6;0.486281!10774-110F9;0.82703!10637-108I7;0.296169!10663-109C6;0.835988!10728-110A8;0.891127!10729-110A9;0.947052!10430-106D7;0.0455541!10730-110B1;0.0238013!10813-111B3;0.933449!10812-111B2;0.603728!10037-101F1;0.56748!10172-103C1;0.0116599!10163-103B1;0.0317695!10076-102A4;0.0281479!10073-102A1;0.0326917!10036-101E9;0.175215!10195-103E6;0.019097!10277-104E7;0.0176946!10434-106E2;0.0016223!10550-107I1;0.573279!10545-107H5;0.264972!10544-107H4;0.606697!10704-109H2;0.624372!10510-107D6;0.226486!10558-107I9;0.451521!10020-101D2;0.640843!10732-110B3;0.000778068!10049-101G4;0.954884!10698-109G5;0.00893807!10437-106E5;0.61471!10417-106C3;0.183775!10035-101E8;0.741577!10171-103B9;0.0245406!10157-103A4;0.0236237!10034-101E7;0.0254049!10072-101I9;0.0244999!10199-103F1;0.242611!10200-103F2;0.010604!10697-109G4;0.001755!10723-110A3;0.339585!10179-103C8;0.314225!10160-103A7;0.0117707!10180-103C9;0.0336829!10162-103A9;0.00562097!10021-101D3;0.00724266!10840-111E3;0.00603633!10706-109H4;0.00202241!10033-101E6;0.235838!10032-101E5;0.0189624!10490-107B4;0.0197827!10439-106E7;0.0829892!10022-101D4;0.230748!10176-103C5;0.000953092!10469-106I1;0.00375626!10067-101I4;0.922359!10411-106B6;0.0045253!10471-106I3;0.0226251!10030-101E3;0.854931!10475-106I7;0.00297289!10787-110H4;0.827116!10477-106I9;0.0322728!10695-109G2;0.690465!11771-123I7;0.159155!11772-123I8;0.28776!11773-123I9;0.00287015!10093-102C3;0.00179666!10442-106F1;0.00353194!10442-106F1;0.00266483!10201-103F3;0.0057694!10639-108I9;0.00199611!11843-124H7;0.267946!11841-124H5;0.96689!10693-109F9;0.179613!10436-106E4;0.693164!10483-107A6;0.459512!10282-104F3;0.844398!10023-101D5;0.0319057!10066-101I3;0.00971743!10065-101I2;0.0214267!10800-110I8;0.000886862!10610-108F7;0.640004!10841-111E4;0.734634!10541-107H1;0.161235!10842-111E5;0.754907!10562-108A4;0.702604!10024-101D6;0.549653!10064-101I1;0.00153148!10609-108F6;0.00728547!10048-101G3;0.767514!10781-110G7;0.00807642!10181-103D1;0.990298!10159-103A6;0.00263226!10056-101H2;0.00836124!10737-110B8;0.0043283!10025-101D7;0.352853!10044-101F8;0.478352!10424-106D1;0.0787629!10463-106H4;0.00301071!10616-108G4;0.643522!10486-107A9;0.0300062!10062-101H8;0.038278!10202-103F4;0.0067197!10158-103A5;0.00223805!10441-106E9;0.00372907!10031-101E4;0.653458!10063-101H9;0.0119367!10063-101H9;0.15807!11763-123H8;0.0144855!11765-123I1;0.352679!11768-123I4;0.0723328!10807-111A6;0.331744!10790-110H7;0.792038!10798-110I6;0.859067!10786-110H3;0.6921!10591-108D6;0.442483!10593-108D8;0.532155!10590-108D5;0.382287!10026-101D8;0.495878!10096-102C6;0.00712509!10168-103B6;0.770954!10154-103A1;0.00468979!10209-103G2;0.0042073!10061-101H7;0.000420732!10027-101D9;0.00636947!10043-101F7;0.119333!10783-110G9;0.619818!10028-101E1;0.323559!10060-101H6;0.000127831!10203-103F5;0.00396367!10059-101H5;0.0020705!10047-101G2;0.00360927!10029-101E2;0.0357278!10058-101H4;0.00123617!10418-106C4;0.00503542!10492-107B6;0.290954!10694-109G1;0.378503!10797-110I5;0.283962!10057-101H3;0.520563!10100-102D1;0.00550184!10055-101H1;0.000526459!10204-103F6;0.00425889!10191-103E2;0.00107488!10563-108A5;0.0251498
|name=CNhs11990_bl_f2
|name=CNhs11990_bl_f2
|tomtom_result=znf143#MA0088.1;0;4.97533e-05;0.0236826;0.0473532;10;CCCCTCCCAG;GATTTCCCATAATGCCTTGC;+!STAT1#MA0137.2;0;0.000714007;0.339867;0.339781;10;CCCCTCCCAG;CATTTCCCGGAAACC;+!EBF1#MA0154.1;-4;0.00370159;1.76195;0.821615;6;CCCCTCCCAG;TCCCTTGGGT;-!Tal1::Gata1#MA0140.1;8;0.004318;2.05537;0.821615;10;CCCCTCCCAG;CTTATCTGTCCCCACCAG;-!SP1#MA0079.2;0;0.00486732;2.31684;0.821615;10;CCCCTCCCAG;CCCCGCCCCC;+!Klf4#MA0039.2;1;0.00556552;2.64919;0.821615;9;CCCCTCCCAG;GCCCCACCCA;-!SPI1#MA0080.1;-2;0.00679144;3.23272;0.821615;6;CCCCTCCCAG;CTTCCG;-!Pax4#MA0068.1;17;0.00847296;4.03313;0.821615;10;CCCCTCCCAG;GAAAAATTTCCCATACTCCACTCCCCCCCC;+!Klf4#MA0039.2;-1;0.0105562;5.02476;0.821615;9;CCCCTCCCAG;CCTTCCTTTA;-!MZF1_1-4#MA0056.1;-4;0.0105972;5.04426;0.821615;6;CCCCTCCCAG;TCCCCA;-!Macho-1#MA0118.1;0;0.0107469;5.11554;0.821615;9;CCCCTCCCAG;GAACCCCCA;-!SP1#MA0079.2;1;0.0112224;5.34185;0.821615;9;CCCCTCCCAG;ACCCCGCCCC;-!Trl#MA0205.1;0;0.0112224;5.34185;0.821615;10;CCCCTCCCAG;TTGCTCTCTC;+!ELF5#MA0136.1;0;0.0128934;6.13725;0.876528;9;CCCCTCCCAG;TACTTCCTT;+!ZMS1#MA0441.1;-3;0.0183315;8.72578;0.999747;7;CCCCTCCCAG;TTCCCCGCA;+!ETS1#MA0098.1;-2;0.019453;9.25964;0.999747;6;CCCCTCCCAG;CTTCCG;+
}}
}}

Latest revision as of 13:11, 7 September 2012

Full Name: CNhs11990_bl_f2

Motif matrix
POACGT
1140.75549366105164346.7797448070893485.75828245025794178.81629582191272
2194.54023004673914276.4544029911682584.02445736087937197.09072634152474
3122.01190122583853334.956643161538359.66020047572539235.48107187720922
463.36058703431063416.923915258129312.383999240837635259.44131520703394
51.22909914557317411.22909914557317411.2290991455731741748.4225193035917
60.0752.10981674031110.00.0
70.0752.10981674031110.00.0
845.442983355531524572.9010864414091.465574065284069132.3001728780864
9336.41214894539735119.9405111142718610.296541164731368285.460615515911
1060.139768294617554118.0055764306204357.01315128851496216.95132072655855

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
znf143#MA0088.104.97533e-050.02368260.047353210CCCCTCCCAGGATTTCCCATAATGCCTTGC+
STAT1#MA0137.200.0007140070.3398670.33978110CCCCTCCCAGCATTTCCCGGAAACC+
EBF1#MA0154.1-40.003701591.761950.8216156CCCCTCCCAGTCCCTTGGGT-
Tal1::Gata1#MA0140.180.0043182.055370.82161510CCCCTCCCAGCTTATCTGTCCCCACCAG-
SP1#MA0079.200.004867322.316840.82161510CCCCTCCCAGCCCCGCCCCC+
Klf4#MA0039.210.005565522.649190.8216159CCCCTCCCAGGCCCCACCCA-
SPI1#MA0080.1-20.006791443.232720.8216156CCCCTCCCAGCTTCCG-
Pax4#MA0068.1170.008472964.033130.82161510CCCCTCCCAGGAAAAATTTCCCATACTCCACTCCCCCCCC+
Klf4#MA0039.2-10.01055625.024760.8216159CCCCTCCCAGCCTTCCTTTA-
MZF1_1-4#MA0056.1-40.01059725.044260.8216156CCCCTCCCAGTCCCCA-
Macho-1#MA0118.100.01074695.115540.8216159CCCCTCCCAGGAACCCCCA-
SP1#MA0079.210.01122245.341850.8216159CCCCTCCCAGACCCCGCCCC-
Trl#MA0205.100.01122245.341850.82161510CCCCTCCCAGTTGCTCTCTC+
ELF5#MA0136.100.01289346.137250.8765289CCCCTCCCAGTACTTCCTT+
ZMS1#MA0441.1-30.01833158.725780.9997477CCCCTCCCAGTTCCCCGCA+
ETS1#MA0098.1-20.0194539.259640.9997476CCCCTCCCAGCTTCCG+
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