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MacroAPE 1083:7-CGTCTGA: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;1.802;1237.974;1.802;560.422!2;1.802;1.802;1796.594;1.802!3;118.932;1.802;1.802;1679.464!4;5.406;989.298;266.696;540.6!5;549.61;117.13;16.21...")
 
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H6;0.249578!10828-111C9;0.642289!10788-110H5;0.570029!10792-110H9;0.479943!10765-110E9;0.599708!10829-111D1;0.741749!10830-111D2;0.314265!10831-111D3;0.750763!10832-111D4;0.924756!10833-111D5;0.35021!10764-110E8;0.365049!10770-110F5;0.348443!10399-106A3;0.576902!10400-106A4;0.165482!10405-106A9;0.194585!10834-111D6;0.146903!10835-111D7;0.356516!10836-111D8;0.805668!10837-111D9;0.379356!10699-109G6;0.801014!10802-111A1;0.873251!10796-110I4;0.948645!10010-101C1;0.626946!10810-111A9;0.624303!10421-106C7;0.479611!10708-109H6;0.895538!12235-129G3;0.381051!12236-129G4;0.682324!12237-129G5;0.70999!10167-103B5;0.49748!10151-102I7;0.252827!10428-106D5;0.361471!10795-110I3;0.320493!10805-111A4;0.184793!10052-101G7;0.878825!10189-103D9;0.213978!10589-108D4;0.010066!10425-106D2;0.669555!10427-106D4;0.356724!10702-109G9;0.134952!10432-106D9;0.354578!10496-107C1;0.86844!10718-109I7;0.534349!10011-101C2;0.604529!10053-101G8;0.32193!10686-109F2;0.789338!10084-102B3;0.937097!10012-101C3;0.433181!10085-102B4;0.377001!10482-107A5;0.204548!10419-106C5;0.312647!10080-102A8;0.947611!10760-110E4;0.707497!10709-109H7;0.242543!10710-109H8;0.64627!10703-109H1;0.351968!10719-109I8;0.815504!10642-109A3;0.658519!10177-103C6;0.801148!10164-103B2;0.309039!10173-103C2;0.507494!10166-103B4;0.237177!10083-102B2;0.308793!10188-103D8;0.262809!10552-107I3;0.190919!10553-107I4;0.330906!10013-101C4;0.775317!10536-107G5;0.107365!10618-108G6;0.451074!10423-106C9;0.174819!10785-110H2;0.0680419!12238-129G6;0.119293!12239-129G7;0.490179!12240-129G8;0.81298!10416-106C2;0.806156!10801-110I9;0.465356!10766-110F1;0.769757!10824-111C5;0.606302!10825-111C6;0.99357!10826-111C7;0.928393!10454-106G4;0.904485!10409-106B4;0.63726!10638-108I8;0.801594!10636-108I6;0.0297459!10513-107D9;0.195046!10420-106C6;0.266832!10082-102B1;0.584043!10014-101C5;0.00257127!10070-101I7;0.0250469!10452-106G2;0.0183113!10453-106G3;0.113707!10449-106F8;0.649949!10042-101F6;0.707365!10069-101I6;0.297858!10193-103E4;0.148952!10631-108I1;0.395987!10438-106E6;0.983178!10488-107B2;0.853525!10196-103E7;0.0810859!10071-101I8;0.441247!10071-101I8;0.0153356!10041-101F5;0.160182!10451-106G1;0.643478!10450-106F9;0.689761!10604-108F1;0.408541!10605-108F2;0.388194!10606-108F3;0.175745!10603-108E9;0.270978!10497-107C2;0.179859!10448-106F7;0.62278!10643-109A4;0.764041!10426-106D3;0.448718!10431-106D8;0.839567!10197-103E8;0.456725!10443-106F2;0.645935!10815-111B5;0.65924!10816-111B6;0.153232!10817-111B7;0.18457!10015-101C6;0.130396!10410-106B5;0.330704!10054-101G9;0.638311!10758-110E2;0.26007!10711-109H9;0.606661!10040-101F4;0.458658!10470-106I2;0.305478!10415-106C1;0.484583!10198-103E9;0.860454!10614-108G2;0.0415995!10612-108F9;0.498474!10549-107H9;0.485922!10615-108G3;0.444449!10487-107B1;0.211558!10433-106E1;0.0826194!10688-109F4;0.325404!10444-106F3;0.847623!10444-106F3;0.981497!10485-107A8;0.871365!10413-106B8;0.66712!10175-103C4;0.384532!10161-103A8;0.386013!12131-128D7;0.530419!10624-108H3;0.407339!10712-109I1;0.595682!10205-103F7;0.587659!10206-103F8;0.407615!10207-103F9;0.487515!10050-101G5;0.260098!10051-101G6;0.602465!10016-101C7;0.60776!10046-101G1;0.348956!10778-110G4;0.171015!10633-108I3;0.259996!10818-111B8;0.365854!10819-111B9;0.117168!10820-111C1;0.12492!10484-107A7;0.140632!10808-111A7;0.382561!10169-103B7;0.545205!10153-102I9;0.290302!13425-144D5;0.327435!13433-144E4;0.562561!13437-144E8;0.587948!11904-125F5;0.616633!11905-125F6;0.191765!10039-101F3;0.361424!10791-110H8;0.28076!10017-101C8;0.165735!10045-101F9;0.536534!10509-107D5;0.0685519!10839-111E2;0.886196!10692-109F8;0.0506416!10079-102A7;0.566565!10078-102A6;0.58698!10721-110A1;0.839296!10569-108B2;0.270825!10570-108B3;0.0691327!10571-108B4;0.148605!10647-109A8;0.12025!10752-110D5;0.772703!10782-110G8;0.275107!10726-110A6;0.274499!10018-101C9;0.845896!10086-102B5;0.311069!10182-103D2;0.724829!10165-103B3;0.271392!10499-107C4;0.243649!10408-106B3;0.318368!10019-101D1;0.283755!10068-101I5;0.10292!10075-102A3;0.031946!10077-102A5;0.184164!10727-110A7;0.89616!10775-110G1;0.957387!10412-106B7;0.456828!12231-129F8;0.894184!12232-129F9;0.215591!12233-129G1;0.314969!12234-129G2;0.767725!10414-106B9;0.887914!10170-103B8;0.906087!10183-103D3;0.383948!10150-102I6;0.397883!10174-103C3;0.433149!10155-103A2;0.257105!10038-101F2;0.351797!10838-111E1;0.265322!10759-110E3;0.146499!10514-107E1;0.626093!10465-106H6;0.255992!10691-109F7;0.3124!10843-111E6;0.547156!10844-111E7;0.655709!11747-123G1;0.0207277!11748-123G2;0.522007!11749-123G3;0.693981!11750-123G4;0.297502!11751-123G5;0.992752!11840-124H4;0.573525!11752-123G6;0.299483!11753-123G7;0.0346113!11754-123G8;0.510724!11755-123G9;0.625518!11756-123H1;0.166323!11833-124G6;0.94933!11760-123H5;0.98029!11836-124G9;0.868144!11758-123H3;0.550823!11835-124G8;0.491228!11762-123H7;0.710735!11838-124H2;0.464202!11757-123H2;0.124034!11759-123H4;0.77424!11761-123H6;0.56065!11842-124H6;0.584568!11837-124H1;0.823895!10568-108B1;0.942324!13230-141I8;0.550026!13231-141I9;0.882249!10696-109G3;0.819977!10493-107B7;0.288437!10494-107B8;0.54655!10850-111F4;0.756409!10851-111F5;0.0358471!10852-111F6;0.0729835!10853-111F7;0.0222797!10854-111F8;0.0903699!10855-111F9;0.125664!10856-111G1;0.490344!10847-111F1;0.0604334!10846-111E9;0.15045!10848-111F2;0.142166!10845-111E8;0.187539!10857-111G2;0.0178553!10858-111G3;0.0796793!10156-103A3;0.0521429!11901-125F2;0.400138!11902-125F3;0.84422!11903-125F4;0.608194!10689-109F5;0.616965!10648-109A9;0.146986!10784-110H1;0.0664676!10744-110C6;0.662658!10772-110F7;0.385495!10474-106I6;0.478298!10600-108E6;0.217343!10684-109E9;0.261411!12226-129F3;0.216105!12227-129F4;0.281607!10508-107D4;0.0575871!10539-107G8;0.0502556!10607-108F4;0.22355!10555-107I6;0.743598!10774-110F9;0.0589561!10637-108I7;0.984606!10663-109C6;0.166809!10728-110A8;0.478741!10729-110A9;0.317075!10430-106D7;0.840161!10730-110B1;0.774392!10813-111B3;0.0936044!10812-111B2;0.579657!10037-101F1;0.0340875!10172-103C1;0.310488!10163-103B1;0.3048!10076-102A4;0.329098!10073-102A1;0.297737!10036-101E9;0.182055!10195-103E6;0.267048!10277-104E7;0.319528!10434-106E2;0.108189!10550-107I1;0.682046!10545-107H5;0.565395!10544-107H4;0.579818!10704-109H2;0.823333!10510-107D6;0.443736!10558-107I9;0.60938!10020-101D2;0.338902!10732-110B3;0.0349847!10049-101G4;0.727085!10698-109G5;0.291332!10437-106E5;0.112847!10417-106C3;0.234281!10035-101E8;0.705701!10171-103B9;0.29808!10157-103A4;0.377116!10034-101E7;0.340477!10072-101I9;0.279428!10199-103F1;0.13261!10200-103F2;0.093343!10697-109G4;0.64855!10723-110A3;0.152632!10179-103C8;0.297895!10160-103A7;0.169472!10180-103C9;0.175226!10162-103A9;0.376842!10021-101D3;0.303405!10840-111E3;0.429351!10706-109H4;0.722198!10033-101E6;0.857493!10032-101E5;0.35711!10490-107B4;0.282844!10439-106E7;0.704992!10022-101D4;0.231328!10176-103C5;0.249434!10469-106I1;0.452902!10067-101I4;0.711255!10411-106B6;0.0405305!10471-106I3;0.219989!10030-101E3;0.305363!10475-106I7;0.252058!10787-110H4;0.335671!10477-106I9;0.415293!10695-109G2;0.27511!11771-123I7;0.897635!11772-123I8;0.0930994!11773-123I9;0.403672!10093-102C3;0.731693!10442-106F1;0.141843!10442-106F1;0.0145154!10201-103F3;0.0233541!10639-108I9;0.270711!11843-124H7;0.756156!11841-124H5;0.218018!10693-109F9;0.184443!10436-106E4;0.255848!10483-107A6;0.460202!10282-104F3;0.534156!10023-101D5;0.867154!10066-101I3;0.874292!10065-101I2;0.682612!10800-110I8;0.288136!10610-108F7;0.332288!10841-111E4;0.105749!10541-107H1;0.822601!10842-111E5;0.239997!10562-108A4;0.149633!10024-101D6;0.136444!10064-101I1;0.0201238!10609-108F6;0.0276829!10048-101G3;0.948463!10781-110G7;0.331241!10181-103D1;0.288577!10159-103A6;0.323367!10056-101H2;0.471026!10737-110B8;0.167015!10025-101D7;0.837814!10044-101F8;0.0941912!10424-106D1;0.0277598!10463-106H4;0.64565!10616-108G4;0.488775!10486-107A9;0.553984!10062-101H8;0.132618!10202-103F4;0.0556894!10158-103A5;0.274688!10441-106E9;0.570727!10031-101E4;0.113104!10063-101H9;0.264962!10063-101H9;0.177915!11763-123H8;0.0511419!11765-123I1;0.625891!11768-123I4;0.684045!10807-111A6;0.537158!10790-110H7;0.71184!10798-110I6;0.609258!10786-110H3;0.479385!10591-108D6;0.477893!10593-108D8;0.900006!10590-108D5;0.849927!10026-101D8;0.892206!10096-102C6;0.122072!10168-103B6;0.777602!10154-103A1;0.36146!10209-103G2;0.490744!10061-101H7;0.551268!10027-101D9;0.201541!10043-101F7;0.186837!10783-110G9;0.0648413!10028-101E1;0.348626!10060-101H6;0.443205!10203-103F5;0.0164083!10059-101H5;0.75133!10047-101G2;0.360891!10029-101E2;0.294577!10058-101H4;0.169693!10418-106C4;0.135677!10492-107B6;0.532399!10694-109G1;0.446972!10797-110I5;0.225443!10057-101H3;0.108795!10100-102D1;0.282432!10055-101H1;0.0646424!10204-103F6;0.0287764!10191-103E2;0.339735!10563-108A5;0.291325
|name=7-CGTCTGA,CNhs13238,BestGuess:SMAD4_si_HM09(0.704480336550248),T:1802.0(69.47%),B:24889.5(56.61%),P:1e-40
|name=7-CGTCTGA,CNhs13238,BestGuess:SMAD4_si_HM09(0.704480336550248),T:1802.0(69.47%),B:24889.5(56.61%),P:1e-40
|tomtom_result=ARG80#MA0271.1;1;0.00631721;3.00699;1;5;CGTCTGA;GCGTCT;-!ABF1#MA0265.1;1;0.013337;6.34839;1;7;CGTCTGA;TCGTATAAAGTGATAA;+!YPR015C#MA0435.1;12;0.0172508;8.21139;1;7;CGTCTGA;TGTAAGGATTTACGTCTTCA;-!bZIP910#MA0096.1;1;0.0191702;9.12503;1;6;CGTCTGA;ACGTCAT;-!YAP6#MA0418.1;0;0.0196086;9.3337;1;7;CGTCTGA;GGTCTGATTACGTAAGCGAC;+
}}
}}

Latest revision as of 13:27, 7 September 2012

Full Name: 7-CGTCTGA,CNhs13238,BestGuess:SMAD4_si_HM09(0.704480336550248),T:1802.0(69.47%),B:24889.5(56.61%),P:1e-40

Motif matrix
POACGT
11.8021237.9741.802560.422
21.8021.8021796.5941.802
3118.9321.8021.8021679.464
45.406989.298266.696540.6
5549.61117.1316.2181119.042
6493.74828.832960.466318.954
71248.7861.8021.802549.61

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
ARG80#MA0271.110.006317213.0069915CGTCTGAGCGTCT-
ABF1#MA0265.110.0133376.3483917CGTCTGATCGTATAAAGTGATAA+
YPR015C#MA0435.1120.01725088.2113917CGTCTGATGTAAGGATTTACGTCTTCA-
bZIP910#MA0096.110.01917029.1250316CGTCTGAACGTCAT-
YAP6#MA0418.100.01960869.333717CGTCTGAGGTCTGATTACGTAAGCGAC+
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