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MCL coexpression mm9:371: Difference between revisions

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|gostat_on_MCL_coexpression=GO:0031223;auditory behavior;0.0254752643401085;114142!GO:0042297;vocal learning;0.0254752643401085;114142!GO:0043022;ribosome binding;0.0407436763680501;14828!GO:0007638;mechanosensory behavior;0.0407436763680501;114142!GO:0048745;smooth muscle development;0.0407436763680501;114142!
|gostat_on_MCL_coexpression=GO:0031223;auditory behavior;0.0254752643401085;114142!GO:0042297;vocal learning;0.0254752643401085;114142!GO:0043022;ribosome binding;0.0407436763680501;14828!GO:0007638;mechanosensory behavior;0.0407436763680501;114142!GO:0048745;smooth muscle development;0.0407436763680501;114142!
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002048!2.74e-28!14;UBERON:0000117!2.74e-28!14;UBERON:0000171!2.74e-28!14;UBERON:0000170!2.74e-28!14;UBERON:0005597!2.74e-28!14;UBERON:0000118!2.74e-28!14;UBERON:0005153!1.26e-22!17;UBERON:0005178!1.26e-22!17;UBERON:0005181!1.26e-22!17;UBERON:0002224!1.26e-22!17;UBERON:0000915!1.26e-22!17;UBERON:0008947!1.26e-22!17;UBERON:0003258!1.26e-22!17;UBERON:0005157!1.15e-18!20;UBERON:0000310!1.57e-12!6;UBERON:0001443!1.57e-12!6;UBERON:0000065!2.77e-07!41;UBERON:0001004!4.95e-07!42
}}
}}

Revision as of 20:30, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:85306222..85306234,+p8@Bcas3
Mm9::chr11:85306239..85306253,+p10@Bcas3
Mm9::chr12:57354134..57354149,+p3@Gm19990
Mm9::chr12:57354215..57354235,+p2@Gm19990
Mm9::chr12:57354237..57354248,+p4@Gm19990
Mm9::chr12:57446759..57446775,-p@chr12:57446759..57446775
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Mm9::chr12:57622327..57622338,-p@chr12:57622327..57622338
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Mm9::chr12:57622375..57622384,-p@chr12:57622375..57622384
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Mm9::chr12:57624241..57624253,-p@chr12:57624241..57624253
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Mm9::chr13:113825435..113825439,+p1@Cdc20b
Mm9::chr14:115241755..115241762,-p@chr14:115241755..115241762
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Mm9::chr17:67043365..67043374,-p17@Ptprm
Mm9::chr17:67043399..67043410,-p9@Ptprm
Mm9::chr1:128367418..128367444,-p@chr1:128367418..128367444
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Mm9::chr2:147864024..147864035,-p1@ENSMUST00000132070
Mm9::chr3:40604700..40604708,+p5@Plk4
Mm9::chr5:28785382..28785394,-p@chr5:28785382..28785394
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Mm9::chr5:28785436..28785450,-p@chr5:28785436..28785450
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Mm9::chr6:124729655..124729666,-p4@Lrrc23
Mm9::chr6:14853484..14853504,+p14@Foxp2
Mm9::chr9:15432284..15432295,-p4@Ccdc67


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0031223auditory behavior0.0254752643401085
GO:0042297vocal learning0.0254752643401085
GO:0043022ribosome binding0.0407436763680501
GO:0007638mechanosensory behavior0.0407436763680501
GO:0048745smooth muscle development0.0407436763680501



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
lung2.74e-2814
respiratory tube2.74e-2814
respiration organ2.74e-2814
pair of lungs2.74e-2814
lung primordium2.74e-2814
lung bud2.74e-2814
epithelial bud1.26e-2217
thoracic cavity element1.26e-2217
thoracic segment organ1.26e-2217
thoracic cavity1.26e-2217
thoracic segment of trunk1.26e-2217
respiratory primordium1.26e-2217
endoderm of foregut1.26e-2217
epithelial fold1.15e-1820
breast1.57e-126
chest1.57e-126
respiratory tract2.77e-0741
respiratory system4.95e-0742


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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