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MCL coexpression mm9:2314: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0005418!7.84e-10!5;UBERON:0002472!7.84e-10!5;UBERON:0008784!7.84e-10!5;UBERON:0006058!7.84e-10!5;UBERON:0004709!7.84e-10!5;UBERON:0002529!7.84e-10!5;UBERON:0010538!7.84e-10!5;UBERON:0005420!7.84e-10!5;UBERON:0010758!7.84e-10!5;UBERON:0000978!7.84e-10!5;UBERON:0002103!7.84e-10!5;UBERON:0000376!7.84e-10!5;UBERON:0000154!7.84e-10!5;UBERON:0010709!7.84e-10!5;UBERON:0005730!7.84e-10!5;UBERON:0003102!2.40e-09!22;UBERON:0000981!4.96e-08!4;UBERON:0003608!4.96e-08!4;UBERON:0003826!4.96e-08!4;UBERON:0008202!4.96e-08!4;UBERON:0004381!4.96e-08!4;UBERON:0007273!4.96e-08!4;UBERON:0010912!4.96e-08!4;UBERON:0002513!4.96e-08!4;UBERON:0004375!4.96e-08!4;UBERON:0010740!4.96e-08!4;UBERON:0010363!4.96e-08!4;UBERON:0003860!4.96e-08!4;UBERON:0002428!4.96e-08!4;UBERON:0010742!4.96e-08!4;UBERON:0002495!4.96e-08!4;UBERON:0003464!4.96e-08!4;UBERON:0003606!4.96e-08!4;UBERON:0005893!4.96e-08!4;UBERON:0009749!4.96e-08!4;UBERON:0010712!4.96e-08!4;UBERON:0010886!4.96e-08!4;UBERON:0005254!4.96e-08!4;UBERON:0010885!4.96e-08!4;UBERON:0010881!4.96e-08!4;UBERON:0010882!4.96e-08!4;UBERON:0007844!4.96e-08!4;UBERON:0001441!4.96e-08!4;UBERON:0011249!4.96e-08!4;UBERON:0002091!4.96e-08!4;UBERON:0003285!4.96e-08!4;UBERON:0004288!4.96e-08!4;UBERON:0010129!4.96e-08!4;UBERON:0006234!4.96e-08!4
}}
}}

Revision as of 18:16, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr1:60869073..60869085,+p@chr1:60869073..60869085
+
Mm9::chr6:124426484..124426485,+p@chr6:124426484..124426485
+
Mm9::chr7:106168942..106168949,-p@chr7:106168942..106168949
-
Mm9::chr7:109248446..109248457,-p3@Art5


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
hindlimb bud7.84e-105
stylopod7.84e-105
lower limb segment7.84e-105
multi-limb segment region7.84e-105
pelvic appendage7.84e-105
limb segment7.84e-105
paired limb/fin segment7.84e-105
pelvic appendage bud7.84e-105
subdivision of organism along appendicular axis7.84e-105
leg7.84e-105
hindlimb7.84e-105
hindlimb stylopod7.84e-105
posterior region of body7.84e-105
pelvic complex7.84e-105
hindlimb/pelvic fin field7.84e-105
surface structure2.40e-0922
femur4.96e-084
hindlimb long bone4.96e-084
upper leg bone4.96e-084
bone of hip region4.96e-084
skeleton of limb4.96e-084
pelvic appendage skeleton4.96e-084
subdivision of skeleton4.96e-084
endochondral bone4.96e-084
bone of free limb or fin4.96e-084
bone of appendage girdle complex4.96e-084
endochondral element4.96e-084
hindlimb mesenchyme4.96e-084
limb bone4.96e-084
bone of pelvic complex4.96e-084
long bone4.96e-084
hindlimb bone4.96e-084
limb long bone4.96e-084
leg bone4.96e-084
limb mesenchyme4.96e-084
limb skeleton subdivision4.96e-084
hindlimb bone pre-cartilage condensation4.96e-084
upper leg mesenchyme4.96e-084
hindlimb cartilage element4.96e-084
limb cartilage element4.96e-084
limb bone pre-cartilage condensation4.96e-084
cartilage element4.96e-084
hindlimb skeleton4.96e-084
appendicular skeletal system4.96e-084
appendicular skeleton4.96e-084
limb of embryo4.96e-084
skeleton4.96e-084
femur cartilage element4.96e-084
femur pre-cartilage condensation4.96e-084


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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