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|coexpression_dpi_cluster_scores_median=0.120671864823979,0.229925105835837,0.162862766291676,0.533989747032537,0.301418832116713,0.337490190618962,0.230662930292494,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153880826611225,0,0,0.414960691097881,0.227431058621176,0,0.269868638010351,0.15562217221269,0.401432828281859,0.441571176482509,0.221464193693345,0,0,0,0.849166504291036,0.635955274007387,0.723255019527685,0,0,0,0,0,0,0,0,0,0,0.0483532735847375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141204588184303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.334344752642282,0,0,0,0,0,0.107511441879825,0,0,0,0.503814410009295,0,0,0,0,0,0,0.127930999153497,0,0,0,0,0.0901223798974778,0,0.20083505566084,0,0.065647551657772,0,0,0,0,0,0.674662332002395,0,0,0.247081966651559,0,0,0,0,0,0,0,0,0,0.0132298507164106,0.305005868718729,0.210060181764701,0.480263139583292,0.0829439327499637,0.0531247310291112,0,0,0,0.0285860945550467,0,0.0580601186410039,0.0999233952154288,0,0,0,0,0,0.120738590896246,0,0.299980196391637,0,0,0,0,0,0,0,0,0.0563689667861811,0,0,0,0,0,0,0,0,0,0,0,0.423588899072447,0.412746633920959,0,0.0906941294286938,0.307697027078558,0.417217219583108,0.221970542984498,0.401711503001371,0.384458647382152,0.333022381745011,0.399329480730723,0.503589307863861,0.336416607008679,0.278483662180697,0.499876769981068,0.379122134738158,0,0.163457778354187,0,0.304976389806375,0.199167347384355,0.265202342922744,0.28971112122618,0.338632005510089,0.211653043078159,0.174231006339549,0.112756652096095,0,0,0,0,0,0,0,0.0652566657696677,0.10536076625968,0,0,0,0.097805083983237,0.0716601710131013,0.388692634028637,0.0827071679391236,0.0753613107413788,0.172864050858987,0.225045611603893,0.167134271056746,0.176819906742281,0.181702267382174,0.0774164737207147,0.0635717028550276,0.159245076116426,0,0.123108665731713,0,0.110353348438991,0,0,0.393626581927576,0.261931105801388,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0121920590509722,0.19527967403162,0.233570323722761,0.0655375003561515,0.519773109342784,0,0.237629660753576,0.114718896326828,0.2441336485308,0.275519968215989,0.283822395835769,0.180944521652268,0.449889919549673,0.233756033654604,0.354904626138748,0,0.307785919889371,0.12724725138213,0,0,0,0,0,0.0661577744756082,0,0,0.083442441818608,0,0,0,0,0,0,0.390476593222055,0,0,0,0,0,0,0,0,0,0,0.291073584836546,0.104082559016822,0.148182634048186,0.327041587496482,0.201970676560993,0.272642165925968,0.390572301017303,0.333880019217553,0.311122885272949,0.487681197411334,0.350767044033686,0.327846271854846,0.422373460442392,0.334093586440323,0.373125108004588,0.554270621535955,0.527034852357424,0.619994958568924,0.819464212044161,0.72421302521997,0.501642097948899,0.38741652951821,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162403313502186,0,0,0,0.0897221596254756,0.193972155684676,0.321993764056882,0.0461358359681119,0.176546191435317,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0632648003305664,0,0,0,0.081359932135904,0.120876255993453,0.17765030293269,0.098117166361508,0,0.0388749848471105,0.0523284672130554,0.0472245945615809,0,0.0905291472420136,0.22512542866431,0,0.112067779638927,0.128033729919821,0,0,0.0589368614163519,0.0390607415003592,0.0678996586311492,0.0729583017401753,0,0.104353329269123,0,0.132229279644795,0.0780974029773103,0.148982201447044,0.0625582350728301,0,0,0,0.0845301845292944,0,0.04990269953719,0.0566462743996566
|coexpression_dpi_cluster_scores_median=0.120671864823979,0.229925105835837,0.162862766291676,0.533989747032537,0.301418832116713,0.337490190618962,0.230662930292494,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153880826611225,0,0,0.414960691097881,0.227431058621176,0,0.269868638010351,0.15562217221269,0.401432828281859,0.441571176482509,0.221464193693345,0,0,0,0.849166504291036,0.635955274007387,0.723255019527685,0,0,0,0,0,0,0,0,0,0,0.0483532735847375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141204588184303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.334344752642282,0,0,0,0,0,0.107511441879825,0,0,0,0.503814410009295,0,0,0,0,0,0,0.127930999153497,0,0,0,0,0.0901223798974778,0,0.20083505566084,0,0.065647551657772,0,0,0,0,0,0.674662332002395,0,0,0.247081966651559,0,0,0,0,0,0,0,0,0,0.0132298507164106,0.305005868718729,0.210060181764701,0.480263139583292,0.0829439327499637,0.0531247310291112,0,0,0,0.0285860945550467,0,0.0580601186410039,0.0999233952154288,0,0,0,0,0,0.120738590896246,0,0.299980196391637,0,0,0,0,0,0,0,0,0.0563689667861811,0,0,0,0,0,0,0,0,0,0,0,0.423588899072447,0.412746633920959,0,0.0906941294286938,0.307697027078558,0.417217219583108,0.221970542984498,0.401711503001371,0.384458647382152,0.333022381745011,0.399329480730723,0.503589307863861,0.336416607008679,0.278483662180697,0.499876769981068,0.379122134738158,0,0.163457778354187,0,0.304976389806375,0.199167347384355,0.265202342922744,0.28971112122618,0.338632005510089,0.211653043078159,0.174231006339549,0.112756652096095,0,0,0,0,0,0,0,0.0652566657696677,0.10536076625968,0,0,0,0.097805083983237,0.0716601710131013,0.388692634028637,0.0827071679391236,0.0753613107413788,0.172864050858987,0.225045611603893,0.167134271056746,0.176819906742281,0.181702267382174,0.0774164737207147,0.0635717028550276,0.159245076116426,0,0.123108665731713,0,0.110353348438991,0,0,0.393626581927576,0.261931105801388,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0121920590509722,0.19527967403162,0.233570323722761,0.0655375003561515,0.519773109342784,0,0.237629660753576,0.114718896326828,0.2441336485308,0.275519968215989,0.283822395835769,0.180944521652268,0.449889919549673,0.233756033654604,0.354904626138748,0,0.307785919889371,0.12724725138213,0,0,0,0,0,0.0661577744756082,0,0,0.083442441818608,0,0,0,0,0,0,0.390476593222055,0,0,0,0,0,0,0,0,0,0,0.291073584836546,0.104082559016822,0.148182634048186,0.327041587496482,0.201970676560993,0.272642165925968,0.390572301017303,0.333880019217553,0.311122885272949,0.487681197411334,0.350767044033686,0.327846271854846,0.422373460442392,0.334093586440323,0.373125108004588,0.554270621535955,0.527034852357424,0.619994958568924,0.819464212044161,0.72421302521997,0.501642097948899,0.38741652951821,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162403313502186,0,0,0,0.0897221596254756,0.193972155684676,0.321993764056882,0.0461358359681119,0.176546191435317,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0632648003305664,0,0,0,0.081359932135904,0.120876255993453,0.17765030293269,0.098117166361508,0,0.0388749848471105,0.0523284672130554,0.0472245945615809,0,0.0905291472420136,0.22512542866431,0,0.112067779638927,0.128033729919821,0,0,0.0589368614163519,0.0390607415003592,0.0678996586311492,0.0729583017401753,0,0.104353329269123,0,0.132229279644795,0.0780974029773103,0.148982201447044,0.0625582350728301,0,0,0,0.0845301845292944,0,0.04990269953719,0.0566462743996566
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0002563!8.48e-07!9;CL:0002251!8.48e-07!9
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000160!1.94e-18!31;UBERON:0005409!3.43e-18!47;UBERON:0003133!4.87e-12!24;UBERON:0005156!6.08e-12!26;UBERON:0000990!6.08e-12!26;UBERON:0000464!6.84e-12!57;UBERON:0000991!1.56e-11!18;UBERON:0005564!1.56e-11!18;UBERON:0002553!2.63e-11!39;UBERON:0003135!2.89e-11!15;UBERON:0004176!4.81e-11!17;UBERON:0009196!4.81e-11!17;UBERON:0009117!4.81e-11!17;UBERON:0003886!9.56e-11!38;UBERON:0000473!1.66e-10!14;UBERON:0000344!2.56e-10!15;UBERON:0003101!3.85e-10!16;UBERON:0000079!3.85e-10!16;UBERON:0002323!4.25e-10!37;UBERON:0004458!4.25e-10!37;UBERON:0001242!2.96e-09!13;UBERON:0000060!2.96e-09!13;UBERON:0001262!2.96e-09!13;UBERON:0004786!2.96e-09!13;UBERON:0000466!4.72e-08!79;UBERON:0000485!1.14e-07!11;UBERON:0001007!2.05e-07!116;UBERON:0001555!2.05e-07!116;UBERON:0007026!2.05e-07!116;UBERON:0004119!2.43e-07!118;UBERON:0000925!2.43e-07!118;UBERON:0006595!2.43e-07!118;UBERON:0003350!8.48e-07!9;UBERON:0004808!8.48e-07!9;UBERON:0001277!8.48e-07!9;UBERON:0004921!9.77e-07!114
}}
}}

Revision as of 18:38, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:23852284..23852303,-p@chr10:23852284..23852303
-
Mm9::chr8:128434239..128434250,+p2@BC021891
Mm9::chr8:128434326..128434369,+p1@BC021891


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
intestinal epithelial cell8.48e-079
epithelial cell of alimentary canal8.48e-079

Uber Anatomy
Ontology termp-valuen
intestine1.94e-1831
gastrointestinal system3.43e-1847
reproductive organ4.87e-1224
reproductive structure6.08e-1226
reproductive system6.08e-1226
anatomical space6.84e-1257
gonad1.56e-1118
gonad primordium1.56e-1118
anatomical cavity2.63e-1139
male reproductive organ2.89e-1115
external genitalia4.81e-1117
indifferent external genitalia4.81e-1117
indifferent gonad4.81e-1117
body cavity precursor9.56e-1138
testis1.66e-1014
mucosa2.56e-1015
male organism3.85e-1016
male reproductive system3.85e-1016
body cavity4.25e-1037
body cavity or lining4.25e-1037
intestinal mucosa2.96e-0913
anatomical wall2.96e-0913
wall of intestine2.96e-0913
gastrointestinal system mucosa2.96e-0913
immaterial anatomical entity4.72e-0879
simple columnar epithelium1.14e-0711
digestive system2.05e-07116
digestive tract2.05e-07116
primitive gut2.05e-07116
endoderm-derived structure2.43e-07118
endoderm2.43e-07118
presumptive endoderm2.43e-07118
epithelium of mucosa8.48e-079
gastrointestinal system epithelium8.48e-079
intestinal epithelium8.48e-079
subdivision of digestive tract9.77e-07114


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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