FFCP PHASE1:Mm9::chr10:122118218..122118225,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=4|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr10:122118218..122118225,+|id=chr10:122118218..122118225,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007811!2.43e-09!86;UBERON:0000153!1.65e-08!94;UBERON:0003408!4.36e-08!24;UBERON:0002370!1.93e-07!23;UBERON:0000974!1.93e-07!23;UBERON:0004807!1.93e-07!23;UBERON:0005058!1.93e-07!23;UBERON:0003351!1.93e-07!23;UBERON:0009113!1.93e-07!23;UBERON:0003295!1.93e-07!23;UBERON:0009722!1.93e-07!23;UBERON:0005562!1.93e-07!23;UBERON:0007690!1.93e-07!23;UBERON:0006562!7.65e-07!24;UBERON:0001557!7.65e-07!24;UBERON:0001042!7.65e-07!24;UBERON:0008814!7.65e-07!24;UBERON:0009145!7.65e-07!24|ontology_enrichment_uberon_v019_2=UBERON:0003408,8.24e-21,24;UBERON:0002370,4.94e-18,23;UBERON:0000974,4.94e-18,23;UBERON:0004807,4.94e-18,23;UBERON:0005058,4.94e-18,23;UBERON:0003351,4.94e-18,23;UBERON:0009113,4.94e-18,23;UBERON:0003295,4.94e-18,23;UBERON:0009722,4.94e-18,23;UBERON:0005562,4.94e-18,23;UBERON:0007690,4.94e-18,23;UBERON:0006562,3.21e-17,24;UBERON:0001557,3.21e-17,24;UBERON:0001042,3.21e-17,24;UBERON:0008814,3.21e-17,24;UBERON:0009145,3.21e-17,24;UBERON:0007811,4.77e-16,36;UBERON:0000072,3.83e-15,27;UBERON:0004177,5.38e-14,29;UBERON:0005057,5.38e-14,29;UBERON:0000153,4.01e-13,43;UBERON:0000077,2.44e-11,35;UBERON:0001004,3.67e-11,42;UBERON:0002390,2.00e-10,45;UBERON:0003061,2.00e-10,45;UBERON:0002193,1.16e-09,48;UBERON:0002405,1.16e-09,48;UBERON:0000065,1.86e-09,41;UBERON:0003929,3.68e-08,55;UBERON:0002530,5.54e-08,65;UBERON:0002368,2.46e-07,60|phase1_expression=0,0,0,0,0,0,0,0.258246646883153,0.140788722151667,0,0.34243593645101,0.159544317990673,0,0.174840804837995,0,0,0,0,0.137114433605739,0,0.255129870453209,0,0,0.159992422793407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.299600110518405,0,0,0,0,0.285650984403804,0,0.122490799214954,0,0,1.10115880999389,0,0.153606533256243,0.263772575460388,0.0914876436024097,0,0,0,0.15279824777681,0.294628585473668,0,0.372798891650601,0,0.0755715601067855,0,0,0,0,0,0.448026887097336,0,0,0,0,0,0,0,0,0,0,0,0.34255163915718,0.258937883647172,0.148442139064825,0,0,0,0,0.117588707135705,0.125666591329675,0.247194967734374,0,0,0.161766849947409,0.220841518460394,0,0,1.46390398505774,0.209446706813455,0.766371165625774,0,0,0,0.599162557619291,0.915001205637253,0,0.173824320192276,0.255715457330331,0,0.162241263067758,0,0,0.252722758433675,0.210441855886474,0.520481771850815,0,0.180062129805349,0.753524089178575,0.544291993210623,0.640568601424249,0.374806898238915,1.81092359517311,0,0.189106080167819,0,0,0.278047249225598,0,0,0,0,0,0,0,0,0,0.23674473558521,0,0.154267112887378,0.232533944750408,0,0,0,0.32833492815819,0.243206428637567,0,0,0,0,0.514523061896422,0.991256348951394,0.793351699990633,0.213288250535234,0,0,0,0.22237804384487,0.760902504450237,0.474529061544512,0,0.251335208800269,0,0.38992817423824,0,0.432276099749388,0.796565093017469,0,0,0,0.814605311381257,0.969762435838129,0.210407459670956,0.379419222745544,0.147610147979602,1.56998727841375,0.123397163921801,0,0,0,0,0,0,0,0,0,0.274561413188081,1.43768206527355,0,0,0,0,0,0.184753190166605,0,0,0.339490171550376,0.234690248288502,0.335012514883631,0,0,0.472905432318573,0,0.318909537314974,0.655453258862952,0.518054945597687,0.578596234326046,0,2.17562273527484,0,0.275936746304732,0,0.117211686592203,0,0,0,0.390438744296638,0,0.238968797952552,0,0,0,0,0.395287777946524,0,0.141940085208269,0,0,0.329940245945071,0,0,0.302323556964751,0.565815239267694,0,0,0.258428293168221,0,0,0.632073515871632,0,0,0.340439605753788,0,0,0.643011105094777,0,0.356737635204141,0.987294123612726,0,0.704015124191131,0.21183207086382,0,0.16488625294148,0,0,0,0,0.582961673259701,0,0,0,0,0.565105371014073,0.136694227721025,0.228778173206523,0.339956859987711,0,0,0,0.474503990371703,0,0.108005340821801,0.836353184057875,0,0.134864346384821,0,0.26175594198403,0.388844919875379,1.24267862617385,0,0,0,0,0,0,0,0.13020438484395,0,0,0,1.26404448251271,0.608175645870493,0.513554785824136,0.909445760844565,0.895133478337407,1.39076948346885,1.56254084375959,1.32920574457119,1.31256384932592,1.06689529317,2.72230699869469,1.16949456887703,2.5977197242889,2.22066114144981,0,0,0,0,0.19318959403219,0.375364950902364,0.183151624267265,0,0.501572104035363,0.564751842617067,0.460325236507177,1.14579102687879,0.343706364687375,0,0.755393897389701,0.675022500231806,0.900642406448441,1.35942722695261,1.55328093525546,0,0,0.170733605754134,0,0,0,0.222246727801615,0,0.320919209591815,0.252697211763798,0.25347929989024,0.377252682772152,0,0.192075457214608,0,0,0,0,0,0.147198920134397,0.685738504770831,0.177475806159338,0.238436189947321,0,0.0941093804153306,0.169229215783353,0.365855945745545,0.263069711437843,0,0,0.118635018124174,0.394017929502254,0.409231043169689,0.154936841185966,0,0,0.233931608445408,0,0,0,0|short_description=p@chr10:122118218..122118225,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=4 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr10:122118218..122118225,+ | |||
|id=chr10:122118218..122118225,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007811!2.43e-09!86;UBERON:0000153!1.65e-08!94;UBERON:0003408!4.36e-08!24;UBERON:0002370!1.93e-07!23;UBERON:0000974!1.93e-07!23;UBERON:0004807!1.93e-07!23;UBERON:0005058!1.93e-07!23;UBERON:0003351!1.93e-07!23;UBERON:0009113!1.93e-07!23;UBERON:0003295!1.93e-07!23;UBERON:0009722!1.93e-07!23;UBERON:0005562!1.93e-07!23;UBERON:0007690!1.93e-07!23;UBERON:0006562!7.65e-07!24;UBERON:0001557!7.65e-07!24;UBERON:0001042!7.65e-07!24;UBERON:0008814!7.65e-07!24;UBERON:0009145!7.65e-07!24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003408,8.24e-21,24;UBERON:0002370,4.94e-18,23;UBERON:0000974,4.94e-18,23;UBERON:0004807,4.94e-18,23;UBERON:0005058,4.94e-18,23;UBERON:0003351,4.94e-18,23;UBERON:0009113,4.94e-18,23;UBERON:0003295,4.94e-18,23;UBERON:0009722,4.94e-18,23;UBERON:0005562,4.94e-18,23;UBERON:0007690,4.94e-18,23;UBERON:0006562,3.21e-17,24;UBERON:0001557,3.21e-17,24;UBERON:0001042,3.21e-17,24;UBERON:0008814,3.21e-17,24;UBERON:0009145,3.21e-17,24;UBERON:0007811,4.77e-16,36;UBERON:0000072,3.83e-15,27;UBERON:0004177,5.38e-14,29;UBERON:0005057,5.38e-14,29;UBERON:0000153,4.01e-13,43;UBERON:0000077,2.44e-11,35;UBERON:0001004,3.67e-11,42;UBERON:0002390,2.00e-10,45;UBERON:0003061,2.00e-10,45;UBERON:0002193,1.16e-09,48;UBERON:0002405,1.16e-09,48;UBERON:0000065,1.86e-09,41;UBERON:0003929,3.68e-08,55;UBERON:0002530,5.54e-08,65;UBERON:0002368,2.46e-07,60 | |||
|phase1_expression=0,0,0,0,0,0,0,0.258246646883153,0.140788722151667,0,0.34243593645101,0.159544317990673,0,0.174840804837995,0,0,0,0,0.137114433605739,0,0.255129870453209,0,0,0.159992422793407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.299600110518405,0,0,0,0,0.285650984403804,0,0.122490799214954,0,0,1.10115880999389,0,0.153606533256243,0.263772575460388,0.0914876436024097,0,0,0,0.15279824777681,0.294628585473668,0,0.372798891650601,0,0.0755715601067855,0,0,0,0,0,0.448026887097336,0,0,0,0,0,0,0,0,0,0,0,0.34255163915718,0.258937883647172,0.148442139064825,0,0,0,0,0.117588707135705,0.125666591329675,0.247194967734374,0,0,0.161766849947409,0.220841518460394,0,0,1.46390398505774,0.209446706813455,0.766371165625774,0,0,0,0.599162557619291,0.915001205637253,0,0.173824320192276,0.255715457330331,0,0.162241263067758,0,0,0.252722758433675,0.210441855886474,0.520481771850815,0,0.180062129805349,0.753524089178575,0.544291993210623,0.640568601424249,0.374806898238915,1.81092359517311,0,0.189106080167819,0,0,0.278047249225598,0,0,0,0,0,0,0,0,0,0.23674473558521,0,0.154267112887378,0.232533944750408,0,0,0,0.32833492815819,0.243206428637567,0,0,0,0,0.514523061896422,0.991256348951394,0.793351699990633,0.213288250535234,0,0,0,0.22237804384487,0.760902504450237,0.474529061544512,0,0.251335208800269,0,0.38992817423824,0,0.432276099749388,0.796565093017469,0,0,0,0.814605311381257,0.969762435838129,0.210407459670956,0.379419222745544,0.147610147979602,1.56998727841375,0.123397163921801,0,0,0,0,0,0,0,0,0,0.274561413188081,1.43768206527355,0,0,0,0,0,0.184753190166605,0,0,0.339490171550376,0.234690248288502,0.335012514883631,0,0,0.472905432318573,0,0.318909537314974,0.655453258862952,0.518054945597687,0.578596234326046,0,2.17562273527484,0,0.275936746304732,0,0.117211686592203,0,0,0,0.390438744296638,0,0.238968797952552,0,0,0,0,0.395287777946524,0,0.141940085208269,0,0,0.329940245945071,0,0,0.302323556964751,0.565815239267694,0,0,0.258428293168221,0,0,0.632073515871632,0,0,0.340439605753788,0,0,0.643011105094777,0,0.356737635204141,0.987294123612726,0,0.704015124191131,0.21183207086382,0,0.16488625294148,0,0,0,0,0.582961673259701,0,0,0,0,0.565105371014073,0.136694227721025,0.228778173206523,0.339956859987711,0,0,0,0.474503990371703,0,0.108005340821801,0.836353184057875,0,0.134864346384821,0,0.26175594198403,0.388844919875379,1.24267862617385,0,0,0,0,0,0,0,0.13020438484395,0,0,0,1.26404448251271,0.608175645870493,0.513554785824136,0.909445760844565,0.895133478337407,1.39076948346885,1.56254084375959,1.32920574457119,1.31256384932592,1.06689529317,2.72230699869469,1.16949456887703,2.5977197242889,2.22066114144981,0,0,0,0,0.19318959403219,0.375364950902364,0.183151624267265,0,0.501572104035363,0.564751842617067,0.460325236507177,1.14579102687879,0.343706364687375,0,0.755393897389701,0.675022500231806,0.900642406448441,1.35942722695261,1.55328093525546,0,0,0.170733605754134,0,0,0,0.222246727801615,0,0.320919209591815,0.252697211763798,0.25347929989024,0.377252682772152,0,0.192075457214608,0,0,0,0,0,0.147198920134397,0.685738504770831,0.177475806159338,0.238436189947321,0,0.0941093804153306,0.169229215783353,0.365855945745545,0.263069711437843,0,0,0.118635018124174,0.394017929502254,0.409231043169689,0.154936841185966,0,0,0.233931608445408,0,0,0,0 | |||
|short_description=p@chr10:122118218..122118225,+ | |||
}} |
Revision as of 15:56, 12 September 2013
Short description: | p@chr10:122118218..122118225, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr10:122118218..122118225, + |
Coexpression cluster: | MCL_coexpression_mm9:4 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
gland of gut | 8.24e-21 | 24 |
thymus | 4.94e-18 | 23 |
neck | 4.94e-18 | 23 |
respiratory system epithelium | 4.94e-18 | 23 |
hemolymphoid system gland | 4.94e-18 | 23 |
pharyngeal epithelium | 4.94e-18 | 23 |
thymic region | 4.94e-18 | 23 |
pharyngeal gland | 4.94e-18 | 23 |
entire pharyngeal arch endoderm | 4.94e-18 | 23 |
thymus primordium | 4.94e-18 | 23 |
early pharyngeal endoderm | 4.94e-18 | 23 |
pharynx | 3.21e-17 | 24 |
upper respiratory tract | 3.21e-17 | 24 |
chordate pharynx | 3.21e-17 | 24 |
pharyngeal arch system | 3.21e-17 | 24 |
pharyngeal region of foregut | 3.21e-17 | 24 |
craniocervical region | 4.77e-16 | 36 |
segment of respiratory tract | 3.83e-15 | 27 |
hemopoietic organ | 5.38e-14 | 29 |
immune organ | 5.38e-14 | 29 |
anterior region of body | 4.01e-13 | 43 |
mixed endoderm/mesoderm-derived structure | 2.44e-11 | 35 |
respiratory system | 3.67e-11 | 42 |
hematopoietic system | 2.00e-10 | 45 |
blood island | 2.00e-10 | 45 |
hemolymphoid system | 1.16e-09 | 48 |
immune system | 1.16e-09 | 48 |
respiratory tract | 1.86e-09 | 41 |
gut epithelium | 3.68e-08 | 55 |
gland | 5.54e-08 | 65 |
endocrine gland | 2.46e-07 | 60 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.