FFCP PHASE1:Mm9::chr10:128180925..128180966,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=13139|HGNC=|MCL_coexpression_id=12|UniProt=O88673|association_with_transcript=145bp_to_ENSMUST00000026414,NM_016811,uc007hoc.1_5end|description=CAGE_peak_2_at_Dgka_5end|id=chr10:128180925..128180966,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000066,2.95e-07,25|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001007!6.81e-19!128;UBERON:0001555!6.81e-19!128;UBERON:0007026!6.81e-19!128;UBERON:0004119!2.21e-18!130;UBERON:0000925!2.21e-18!130;UBERON:0006595!2.21e-18!130;UBERON:0004921!1.11e-17!126;UBERON:0004185!1.11e-17!126;UBERON:0005409!1.19e-10!59;UBERON:0000344!2.41e-09!15;UBERON:0003929!2.47e-08!55;UBERON:0000160!3.73e-08!43;UBERON:0001242!4.50e-08!13;UBERON:0000060!4.50e-08!13;UBERON:0001262!4.50e-08!13;UBERON:0004786!4.50e-08!13;UBERON:0004923!5.30e-08!24;UBERON:0000490!5.31e-08!66;UBERON:0005911!1.09e-07!69;UBERON:0003104!5.28e-07!131;UBERON:0009142!5.28e-07!131;UBERON:0000077!9.22e-07!97|ontology_enrichment_uberon_v019_2=UBERON:0001007,6.37e-26,116;UBERON:0001555,6.37e-26,116;UBERON:0007026,6.37e-26,116;UBERON:0004119,1.46e-25,118;UBERON:0000925,1.46e-25,118;UBERON:0006595,1.46e-25,118;UBERON:0004921,2.58e-24,114;UBERON:0005409,2.58e-17,47;UBERON:0000160,4.76e-15,31;UBERON:0000344,2.54e-11,15;UBERON:0003929,5.74e-10,55;UBERON:0001242,9.90e-10,13;UBERON:0001262,9.90e-10,13;UBERON:0004786,9.90e-10,13;UBERON:0004923,1.29e-09,24;UBERON:0000490,2.89e-09,66;UBERON:0005911,5.26e-09,69;UBERON:0001041,6.42e-09,80;UBERON:0000077,2.13e-08,35;UBERON:0000072,2.05e-07,27;UBERON:0004177,2.47e-07,29;UBERON:0005057,2.47e-07,29;UBERON:0003408,7.84e-07,24;UBERON:0006562,8.43e-07,24;UBERON:0001557,8.43e-07,24;UBERON:0001042,8.43e-07,24;UBERON:0008814,8.43e-07,24;UBERON:0009145,8.43e-07,24;UBERON:0002193,8.67e-07,48;UBERON:0002405,8.67e-07,48|phase1_expression=0,62.4665979674456,46.8649216571222,33.5735274550581,33.0591181764589,13.4303417529512,14.0167584357315,17.6898953114959,1.68946466582,8.66038747391376,0.513653904676515,1.51567102091139,8.56003649656029,15.2985704233245,0.999329285446988,1.21485160433896,2.09868563438444,8.67520954735154,7.81552271552711,3.81950686618227,1.44573593256819,0.397163804803541,1.04479915655574,29.2786133711934,28.2173415712619,45.3643251650866,33.1686737042488,35.1218109277999,41.2350820220331,23.9428623271934,25.9424697466706,0,0,0,1.73310971850765,2.32728503501889,2.24586291888606,4.60384793810598,6.2506827561904,6.80580867165938,7.64700934440319,6.14740936462601,9.22469670759192,0.755380907853464,0.608261587317087,0.734187008646726,0,0,0,0.58328969722285,0.699932108126813,0,5.87239121202077,12.3311564141929,12.4354705682712,0.257259436035947,1.43266719969378,2.06268836910977,0,0,0,0.338844532069132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.510749352340751,0.921639199537461,0,0,0.52091337055676,0,0,0.45839474333043,0.294628585473668,0.142371680799103,0,0.37863096666592,0.831287161174641,2.6087803983151,0,0,2.15881276655127,3.89865850468601,4.03224198387602,3.7919993435573,0.170430322578058,0,0,0,0,2.54805239706646,0,3.46385665617943,1.26679932737549,2.02209778005913,6.96521666286266,22.7865337609511,2.3750742250372,0,0.304465478312141,1.15307748628029,0.452167921657868,0.940709657085638,0.879666139307728,0.494389935468748,1.3013942122792,4.42305275974937,0.323533699894818,1.98757366614354,1.93950101254089,14.9113408974498,0.585561594023094,0.41889341362691,28.3557331281536,0.359445373517761,1.79970819298022,0.254140454146129,1.79748767285787,0.915001205637253,0.125654352112864,0.347648640384553,0.767146371990992,0.62336413367868,0.324482526135515,0.407357455401265,2.23932547098167,0,0.841767423545896,0.130120442962704,0.229902104433473,0.180062129805349,0.60281927134286,0.204109497453984,0.12811372028485,0.374806898238915,0.258703370739016,0,0.189106080167819,0.351902248327898,0.43839146485515,0.834141747676794,1.74126083261083,2.05782136407943,0,0,0.51469581422943,0,0,0.234526059981096,0.540186184383045,0,0.196764231747404,0.154267112887378,0,0,0.233530684734339,0,0.820837320395476,0.56748166682099,0.730999937126662,1.3173006917463,1.74468344388483,0.210289948564127,0,53.1974240603915,27.2384083663451,0.213288250535234,0.232236671860439,0.257734922644187,1.21010114774006,2.66853652613844,2.09248188723815,23.2519240156811,4.28217282282428,6.78605063760728,3.78017296878187,5.65395852645448,21.5716658077013,26.3688420847127,29.273767168392,0,0.228497025219458,1.1270773567308,0.203651327845314,0.387904974335251,0.911765658574141,0.758838445491087,3.24742325555125,3.45397201251025,3.45512058981041,5.03969466048153,0.333690211432188,0.393117990226406,0.224862112384854,0.811440485554012,1.20588579876208,1.2731292589071,1.43848068725405,0.972811360650212,0.823684239564244,0,1.48856379067401,1.5601883655728,1.01031551178845,2.33216637578486,4.82443521363367,3.69506380333209,0.189491411770485,0.162964976442026,0,0,0.670025029767263,1.90434912708811,1.95133647857799,1.41871629695572,0.664394068946325,0.956728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| ||
|EntrezGene=13139 | |||
|HGNC= | |||
|MCL_coexpression_id=12 | |||
|UniProt=O88673 | |||
|association_with_transcript=145bp_to_ENSMUST00000026414,NM_016811,uc007hoc.1_5end | |||
|description=CAGE_peak_2_at_Dgka_5end | |||
|id=chr10:128180925..128180966,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.95e-07,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001007!6.81e-19!128;UBERON:0001555!6.81e-19!128;UBERON:0007026!6.81e-19!128;UBERON:0004119!2.21e-18!130;UBERON:0000925!2.21e-18!130;UBERON:0006595!2.21e-18!130;UBERON:0004921!1.11e-17!126;UBERON:0004185!1.11e-17!126;UBERON:0005409!1.19e-10!59;UBERON:0000344!2.41e-09!15;UBERON:0003929!2.47e-08!55;UBERON:0000160!3.73e-08!43;UBERON:0001242!4.50e-08!13;UBERON:0000060!4.50e-08!13;UBERON:0001262!4.50e-08!13;UBERON:0004786!4.50e-08!13;UBERON:0004923!5.30e-08!24;UBERON:0000490!5.31e-08!66;UBERON:0005911!1.09e-07!69;UBERON:0003104!5.28e-07!131;UBERON:0009142!5.28e-07!131;UBERON:0000077!9.22e-07!97 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001007,6.37e-26,116;UBERON:0001555,6.37e-26,116;UBERON:0007026,6.37e-26,116;UBERON:0004119,1.46e-25,118;UBERON:0000925,1.46e-25,118;UBERON:0006595,1.46e-25,118;UBERON:0004921,2.58e-24,114;UBERON:0005409,2.58e-17,47;UBERON:0000160,4.76e-15,31;UBERON:0000344,2.54e-11,15;UBERON:0003929,5.74e-10,55;UBERON:0001242,9.90e-10,13;UBERON:0001262,9.90e-10,13;UBERON:0004786,9.90e-10,13;UBERON:0004923,1.29e-09,24;UBERON:0000490,2.89e-09,66;UBERON:0005911,5.26e-09,69;UBERON:0001041,6.42e-09,80;UBERON:0000077,2.13e-08,35;UBERON:0000072,2.05e-07,27;UBERON:0004177,2.47e-07,29;UBERON:0005057,2.47e-07,29;UBERON:0003408,7.84e-07,24;UBERON:0006562,8.43e-07,24;UBERON:0001557,8.43e-07,24;UBERON:0001042,8.43e-07,24;UBERON:0008814,8.43e-07,24;UBERON:0009145,8.43e-07,24;UBERON:0002193,8.67e-07,48;UBERON:0002405,8.67e-07,48 | |||
|phase1_expression=0,62.4665979674456,46.8649216571222,33.5735274550581,33.0591181764589,13.4303417529512,14.0167584357315,17.6898953114959,1.68946466582,8.66038747391376,0.513653904676515,1.51567102091139,8.56003649656029,15.2985704233245,0.999329285446988,1.21485160433896,2.09868563438444,8.67520954735154,7.81552271552711,3.81950686618227,1.44573593256819,0.397163804803541,1.04479915655574,29.2786133711934,28.2173415712619,45.3643251650866,33.1686737042488,35.1218109277999,41.2350820220331,23.9428623271934,25.9424697466706,0,0,0,1.73310971850765,2.32728503501889,2.24586291888606,4.60384793810598,6.2506827561904,6.80580867165938,7.64700934440319,6.14740936462601,9.22469670759192,0.755380907853464,0.608261587317087,0.734187008646726,0,0,0,0.58328969722285,0.699932108126813,0,5.87239121202077,12.3311564141929,12.4354705682712,0.257259436035947,1.43266719969378,2.06268836910977,0,0,0,0.338844532069132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.510749352340751,0.921639199537461,0,0,0.52091337055676,0,0,0.45839474333043,0.294628585473668,0.142371680799103,0,0.37863096666592,0.831287161174641,2.6087803983151,0,0,2.15881276655127,3.89865850468601,4.03224198387602,3.7919993435573,0.170430322578058,0,0,0,0,2.54805239706646,0,3.46385665617943,1.26679932737549,2.02209778005913,6.96521666286266,22.7865337609511,2.3750742250372,0,0.304465478312141,1.15307748628029,0.452167921657868,0.940709657085638,0.879666139307728,0.494389935468748,1.3013942122792,4.42305275974937,0.323533699894818,1.98757366614354,1.93950101254089,14.9113408974498,0.585561594023094,0.41889341362691,28.3557331281536,0.359445373517761,1.79970819298022,0.254140454146129,1.79748767285787,0.915001205637253,0.125654352112864,0.347648640384553,0.767146371990992,0.62336413367868,0.324482526135515,0.407357455401265,2.23932547098167,0,0.841767423545896,0.130120442962704,0.229902104433473,0.180062129805349,0.60281927134286,0.204109497453984,0.12811372028485,0.374806898238915,0.258703370739016,0,0.189106080167819,0.351902248327898,0.43839146485515,0.834141747676794,1.74126083261083,2.05782136407943,0,0,0.51469581422943,0,0,0.234526059981096,0.540186184383045,0,0.196764231747404,0.154267112887378,0,0,0.233530684734339,0,0.820837320395476,0.56748166682099,0.730999937126662,1.3173006917463,1.74468344388483,0.210289948564127,0,53.1974240603915,27.2384083663451,0.213288250535234,0.232236671860439,0.257734922644187,1.21010114774006,2.66853652613844,2.09248188723815,23.2519240156811,4.28217282282428,6.78605063760728,3.78017296878187,5.65395852645448,21.5716658077013,26.3688420847127,29.273767168392,0,0.228497025219458,1.1270773567308,0.203651327845314,0.387904974335251,0.911765658574141,0.758838445491087,3.24742325555125,3.45397201251025,3.45512058981041,5.03969466048153,0.333690211432188,0.393117990226406,0.224862112384854,0.811440485554012,1.20588579876208,1.2731292589071,1.43848068725405,0.972811360650212,0.823684239564244,0,1.48856379067401,1.5601883655728,1.01031551178845,2.33216637578486,4.82443521363367,3.69506380333209,0.189491411770485,0.162964976442026,0,0,0.670025029767263,1.90434912708811,1.95133647857799,1.41871629695572,0.664394068946325,0.956728611944923,1.96635977658886,2.07221978239075,3.90552458170081,4.52373851817817,0,0.983528546038072,1.37968373152366,0.160550589987792,0.703270119553219,0,1.76729649043061,0,0,0.215423397732799,0.477937595905104,0.891194696329576,0.283076530788832,0,0,0.395287777946524,1.92792789853084,0.99358059645788,0,0.488660878060728,0.989820737835213,1.32745138339963,0,0.604647113929502,0.377210159511796,0.295301892880773,0.614870295887855,0.775284879504663,0.363533729477506,0,0.632073515871632,1.05418608574999,1.03135543248187,3.40439605753788,0,0.129358683782755,0,0.177340233642274,0.535106452806212,0.658196082408484,0.304464949114599,0,1.27099242518292,3.52845436887939,1.6488625294148,3.87514624070173,1.86970067277283,1.67121281604391,1.14898629821543,16.3229268512716,0.18542530201051,4.44264290074417,0.412773735926445,1.48155621895769,1.50694765603753,2.32380187125743,4.57556346413045,1.86976272993241,1.11961161858926,1.65839968565309,2.86401185404534,0.316335993581135,1.01659733563424,1.94409613479242,2.29997125615916,3.71216358368502,3.77620169877498,1.1571483801547,1.83229159388821,12.0541925161367,2.4853572523477,0.56369293868419,0.448549638131936,0.330916980914195,0.388902376688095,0.258319646955462,0.168956125490778,0.234714477291508,0.5208175393758,1.8874681996628,0.966336483304024,0.864090018773596,8.84831137758899,0.405450430580328,1.33524244314275,1.29920822977795,2.8644271306797,4.76835251475036,3.96644983415897,4.72606486958647,6.46185279668145,5.86792411243499,6.957006774442,7.40679893622118,7.5045236479457,8.18138315270983,2.26730383615211,0.221985953374065,0.807424709485281,0.671538465456314,3.67060228661162,0.750729901804728,2.93042598827624,7.07415650960917,2.00628841614145,0,0,0,0,0.685082519770642,0,0,0.45032120322422,0.906284817968409,0,0,0,0.170733605754134,0.243106717068294,0.628839487883947,0.183843508450014,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| |||
|short_description=p2@Dgka | |||
}} |
Revision as of 16:11, 12 September 2013
Short description: | p2@Dgka |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Dgka_5end |
Coexpression cluster: | MCL_coexpression_mm9:12 |
Association with transcript: | 145bp_to_ENSMUST00000026414, NM_016811, uc007hoc.1_5end |
EntrezGene: | Dgka |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.95e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
digestive system | 6.37e-26 | 116 |
digestive tract | 6.37e-26 | 116 |
primitive gut | 6.37e-26 | 116 |
endoderm-derived structure | 1.46e-25 | 118 |
endoderm | 1.46e-25 | 118 |
presumptive endoderm | 1.46e-25 | 118 |
subdivision of digestive tract | 2.58e-24 | 114 |
gastrointestinal system | 2.58e-17 | 47 |
intestine | 4.76e-15 | 31 |
mucosa | 2.54e-11 | 15 |
gut epithelium | 5.74e-10 | 55 |
intestinal mucosa | 9.90e-10 | 13 |
wall of intestine | 9.90e-10 | 13 |
gastrointestinal system mucosa | 9.90e-10 | 13 |
organ component layer | 1.29e-09 | 24 |
unilaminar epithelium | 2.89e-09 | 66 |
endo-epithelium | 5.26e-09 | 69 |
foregut | 6.42e-09 | 80 |
mixed endoderm/mesoderm-derived structure | 2.13e-08 | 35 |
segment of respiratory tract | 2.05e-07 | 27 |
hemopoietic organ | 2.47e-07 | 29 |
immune organ | 2.47e-07 | 29 |
gland of gut | 7.84e-07 | 24 |
pharynx | 8.43e-07 | 24 |
upper respiratory tract | 8.43e-07 | 24 |
chordate pharynx | 8.43e-07 | 24 |
pharyngeal arch system | 8.43e-07 | 24 |
pharyngeal region of foregut | 8.43e-07 | 24 |
hemolymphoid system | 8.67e-07 | 48 |
immune system | 8.67e-07 | 48 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.