NonredundantMotifs:12: Difference between revisions
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|entrez_gene_id=6670
|motif_cluster_2013_march_motif_members= /SWISSREGULON:EGR1..3.p2~PATZ1.p2~MAZ.p2~SP1.p2 /HOMER:EGR2_Thymocytes-Egr2-ChIP-Seq(GSE34254)~...") |
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{{Known_motif | {{Known_motif | ||
|entrez_gene_id=6670 | |entrez_gene_id=6670 | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:EGR1..3.p2~PATZ1.p2~MAZ.p2~SP1.p2 /HOMER:EGR2_Thymocytes-Egr2-ChIP-Seq(GSE34254)~EGR1_K562-EGR1-ChIP-Seq | |motif_cluster_2013_march_motif_members= /JASPAR:MA0162.1;Egr1~MA0079.2;SP1 /HOCOMOCO:SP1_f1~SP1_f2~EGR3_f1~EGR1_f2~ZN148_si~EGR2_si~EGR4_f1~WT1_f1~SP3_f1~KLF6_si /SWISSREGULON:EGR1..3.p2~PATZ1.p2~MAZ.p2~SP1.p2 /HOMER:EGR2_Thymocytes-Egr2-ChIP-Seq(GSE34254)~EGR1_K562-EGR1-ChIP-Seq /UNIPROBE:Zfp410_secondary;SCI09~Sp4_primary;SCI09~Zif268;NBT06~Bcl6b_secondary;SCI09~Egr1_primary;SCI09 | ||
|name=known12 | |name=known12 | ||
|representative_motif_db=HOCOMOCO | |representative_motif_db=HOCOMOCO | ||
Revision as of 16:20, 1 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known12
- db :HOCOMOCO
- Id :SP3_f1
- name :
- score :5.013317861704715
- External refs:
- Internal refs:
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Sub Motif Members
