FFCP PHASE1:Hg19::chr1:155270770..155270797,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5313|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9020|TSSclassifier=S|UniProt=P30613|association_with_transcript=0bp_to_ENST00000392414,NM_181871,uc001fka.3,uc010pga.1_5end|coexpression_cluster_id=C5|description=CAGE_peak_3_at_PKLR_5end|id=chr1:155270770..155270797,-|ontology_enrichment_celltype=CL:0000181!4.28e-22!12;CL:0000417!4.28e-22!12;CL:0000668!4.28e-22!12;CL:0000414!4.28e-22!12;CL:0000412!4.28e-22!12;CL:0000182!4.28e-22!12|ontology_enrichment_celltype_v019=CL:0000182;2.81e-24;12|ontology_enrichment_celltype_v019_2=CL:0000182,3.17e-24,12;CL:0000223,7.21e-07,58|ontology_enrichment_development_v019=UBERON:0004161;2.02e-26;11!UBERON:0009497;2.29e-22;13!UBERON:0003104;3.19e-13;31!UBERON:0001041;1.12e-09;30|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002107!2.19e-24!19;UBERON:0006925!2.19e-24!19;UBERON:0008836!2.19e-24!19;UBERON:0009497!6.24e-23!25;UBERON:0000015!6.24e-23!25;UBERON:0002423!6.24e-23!25;UBERON:0006235!6.24e-23!25;UBERON:0004161!6.24e-23!25;UBERON:0008835!6.45e-21!22;UBERON:0003894!6.45e-21!22;UBERON:0009854!5.83e-20!23;UBERON:0007499!2.81e-18!25;UBERON:0005057!1.56e-17!26;UBERON:0009856!1.56e-17!26;UBERON:0005172!2.68e-17!55;UBERON:0005173!2.68e-17!55;UBERON:0002417!2.19e-15!61;UBERON:0000916!2.19e-15!61;UBERON:0002365!1.57e-14!31;UBERON:0002330!1.57e-14!31;UBERON:0002368!9.62e-13!35;UBERON:0003929!3.18e-12!54;UBERON:0000949!1.15e-09!45;UBERON:0000160!4.75e-09!27;UBERON:0004921!1.15e-08!129;UBERON:0004185!1.15e-08!129;UBERON:0001301!1.78e-08!1;UBERON:0001007!6.30e-08!155;UBERON:0001555!6.30e-08!155;UBERON:0007026!6.30e-08!155;UBERON:0005177!7.38e-08!107;UBERON:0005911!1.72e-07!82;UBERON:0009569!2.49e-07!113;UBERON:0002530!4.15e-07!59;UBERON:0004119!4.79e-07!169;UBERON:0000925!4.79e-07!169;UBERON:0006595!4.79e-07!169;UBERON:0005409!6.34e-07!35|ontology_enrichment_uberon_v019=UBERON:0002107;1.24e-29;19!UBERON:0006925;1.24e-29;19!UBERON:0002423;2.09e-22;25!UBERON:0002365;3.75e-17;31!UBERON:0002330;3.75e-17;31!UBERON:0002368;6.89e-15;33!UBERON:0000949;6.08e-11;43!UBERON:0000160;1.42e-10;17!UBERON:0002108;2.25e-10;4!UBERON:0001007;4.09e-09;81!UBERON:0005172;6.43e-09;52!UBERON:0005173;6.43e-09;52!UBERON:0005409;2.54e-08;22!UBERON:0002417;2.44e-07;58!UBERON:0000916;2.44e-07;58|ontology_enrichment_uberon_v019_2=UBERON:0002107,1.35e-29,19;UBERON:0006925,1.35e-29,19;UBERON:0008836,1.35e-29,19;UBERON:0008835,1.70e-25,22;UBERON:0003894,1.70e-25,22;UBERON:0009854,2.29e-24,23;UBERON:0007499,2.23e-22,25;UBERON:0009497,2.23e-22,25;UBERON:0000015,2.23e-22,25;UBERON:0002423,2.23e-22,25;UBERON:0006235,2.23e-22,25;UBERON:0004161,2.23e-22,25;UBERON:0009856,1.69e-21,26;UBERON:0002365,6.05e-18,31;UBERON:0002330,6.05e-18,31;UBERON:0002368,7.86e-16,35;UBERON:0003929,5.07e-13,54;UBERON:0005172,5.16e-13,54;UBERON:0005173,5.16e-13,54;UBERON:0000949,3.49e-12,45;UBERON:0002417,1.25e-11,60;UBERON:0000916,1.25e-11,60;UBERON:0000160,1.38e-10,17;UBERON:0004921,1.96e-10,118;UBERON:0002108,2.35e-10,4;UBERON:0002530,3.82e-09,59;UBERON:0005911,2.80e-08,82;UBERON:0001007,3.16e-08,145;UBERON:0001555,3.16e-08,145;UBERON:0007026,3.16e-08,145;UBERON:0005409,2.17e-07,25;UBERON:0004119,2.56e-07,160;UBERON:0000925,2.56e-07,160;UBERON:0006595,2.56e-07,160|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.1913304159268,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.4079531339648,0.982827216677626,6.49868897349544,0,1.47586126251736,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.4139309684651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.8517403390435,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.99424864653152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.755798243562828,0,0,0,0,0,0,0,0,0,2.90799823828566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.68069372556344,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0.171594997861965,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57566364614447,1.2362378757175,2.15691340333392,0,0,0,0,0,0,0,0,0,0,0,1.26089131678717,0.786818822024972,0,0,0,0,0,0,0,0,0,0,0,0,0,7.767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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=5313 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9020 | |||
|TSSclassifier=S | |||
|UniProt=P30613 | |||
|association_with_transcript=0bp_to_ENST00000392414,NM_181871,uc001fka.3,uc010pga.1_5end | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_3_at_PKLR_5end | |||
|id=chr1:155270770..155270797,- | |||
|ontology_enrichment_celltype=CL:0000181!4.28e-22!12;CL:0000417!4.28e-22!12;CL:0000668!4.28e-22!12;CL:0000414!4.28e-22!12;CL:0000412!4.28e-22!12;CL:0000182!4.28e-22!12 | |||
|ontology_enrichment_celltype_v019=CL:0000182;2.81e-24;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,3.17e-24,12;CL:0000223,7.21e-07,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;2.02e-26;11!UBERON:0009497;2.29e-22;13!UBERON:0003104;3.19e-13;31!UBERON:0001041;1.12e-09;30 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!2.19e-24!19;UBERON:0006925!2.19e-24!19;UBERON:0008836!2.19e-24!19;UBERON:0009497!6.24e-23!25;UBERON:0000015!6.24e-23!25;UBERON:0002423!6.24e-23!25;UBERON:0006235!6.24e-23!25;UBERON:0004161!6.24e-23!25;UBERON:0008835!6.45e-21!22;UBERON:0003894!6.45e-21!22;UBERON:0009854!5.83e-20!23;UBERON:0007499!2.81e-18!25;UBERON:0005057!1.56e-17!26;UBERON:0009856!1.56e-17!26;UBERON:0005172!2.68e-17!55;UBERON:0005173!2.68e-17!55;UBERON:0002417!2.19e-15!61;UBERON:0000916!2.19e-15!61;UBERON:0002365!1.57e-14!31;UBERON:0002330!1.57e-14!31;UBERON:0002368!9.62e-13!35;UBERON:0003929!3.18e-12!54;UBERON:0000949!1.15e-09!45;UBERON:0000160!4.75e-09!27;UBERON:0004921!1.15e-08!129;UBERON:0004185!1.15e-08!129;UBERON:0001301!1.78e-08!1;UBERON:0001007!6.30e-08!155;UBERON:0001555!6.30e-08!155;UBERON:0007026!6.30e-08!155;UBERON:0005177!7.38e-08!107;UBERON:0005911!1.72e-07!82;UBERON:0009569!2.49e-07!113;UBERON:0002530!4.15e-07!59;UBERON:0004119!4.79e-07!169;UBERON:0000925!4.79e-07!169;UBERON:0006595!4.79e-07!169;UBERON:0005409!6.34e-07!35 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;1.24e-29;19!UBERON:0006925;1.24e-29;19!UBERON:0002423;2.09e-22;25!UBERON:0002365;3.75e-17;31!UBERON:0002330;3.75e-17;31!UBERON:0002368;6.89e-15;33!UBERON:0000949;6.08e-11;43!UBERON:0000160;1.42e-10;17!UBERON:0002108;2.25e-10;4!UBERON:0001007;4.09e-09;81!UBERON:0005172;6.43e-09;52!UBERON:0005173;6.43e-09;52!UBERON:0005409;2.54e-08;22!UBERON:0002417;2.44e-07;58!UBERON:0000916;2.44e-07;58 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,1.35e-29,19;UBERON:0006925,1.35e-29,19;UBERON:0008836,1.35e-29,19;UBERON:0008835,1.70e-25,22;UBERON:0003894,1.70e-25,22;UBERON:0009854,2.29e-24,23;UBERON:0007499,2.23e-22,25;UBERON:0009497,2.23e-22,25;UBERON:0000015,2.23e-22,25;UBERON:0002423,2.23e-22,25;UBERON:0006235,2.23e-22,25;UBERON:0004161,2.23e-22,25;UBERON:0009856,1.69e-21,26;UBERON:0002365,6.05e-18,31;UBERON:0002330,6.05e-18,31;UBERON:0002368,7.86e-16,35;UBERON:0003929,5.07e-13,54;UBERON:0005172,5.16e-13,54;UBERON:0005173,5.16e-13,54;UBERON:0000949,3.49e-12,45;UBERON:0002417,1.25e-11,60;UBERON:0000916,1.25e-11,60;UBERON:0000160,1.38e-10,17;UBERON:0004921,1.96e-10,118;UBERON:0002108,2.35e-10,4;UBERON:0002530,3.82e-09,59;UBERON:0005911,2.80e-08,82;UBERON:0001007,3.16e-08,145;UBERON:0001555,3.16e-08,145;UBERON:0007026,3.16e-08,145;UBERON:0005409,2.17e-07,25;UBERON:0004119,2.56e-07,160;UBERON:0000925,2.56e-07,160;UBERON:0006595,2.56e-07,160 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.1913304159268,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.4079531339648,0.982827216677626,6.49868897349544,0,1.47586126251736,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.4139309684651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.8517403390435,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.99424864653152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.755798243562828,0,0,0,0,0,0,0,0,0,2.90799823828566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.68069372556344,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0.171594997861965,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57566364614447,1.2362378757175,2.15691340333392,0,0,0,0,0,0,0,0,0,0,0,1.26089131678717,0.786818822024972,0,0,0,0,0,0,0,0,0,0,0,0,0,7.76726838493837,5.30027555648885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243835849964539,0,0,0,0,0,0,0,0,0,0,5.24784275134024,2.62271472604749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p3@PKLR | |||
}} |
Revision as of 00:44, 12 September 2013
Short description: | p3@PKLR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_PKLR_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 0bp_to_ENST00000392414, NM_181871, uc001fka.3, uc010pga.1_5end |
EntrezGene: | PKLR |
HGNC: | 9020 |
UniProt: | P30613 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 3.17e-24 | 12 |
endodermal cell | 7.21e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
liver | 1.35e-29 | 19 |
digestive gland | 1.35e-29 | 19 |
liver bud | 1.35e-29 | 19 |
hepatic diverticulum | 1.70e-25 | 22 |
liver primordium | 1.70e-25 | 22 |
digestive tract diverticulum | 2.29e-24 | 23 |
epithelial sac | 2.23e-22 | 25 |
epithelium of foregut-midgut junction | 2.23e-22 | 25 |
anatomical boundary | 2.23e-22 | 25 |
hepatobiliary system | 2.23e-22 | 25 |
foregut-midgut junction | 2.23e-22 | 25 |
septum transversum | 2.23e-22 | 25 |
sac | 1.69e-21 | 26 |
exocrine gland | 6.05e-18 | 31 |
exocrine system | 6.05e-18 | 31 |
endocrine gland | 7.86e-16 | 35 |
gut epithelium | 5.07e-13 | 54 |
abdomen element | 5.16e-13 | 54 |
abdominal segment element | 5.16e-13 | 54 |
endocrine system | 3.49e-12 | 45 |
abdominal segment of trunk | 1.25e-11 | 60 |
abdomen | 1.25e-11 | 60 |
intestine | 1.38e-10 | 17 |
subdivision of digestive tract | 1.96e-10 | 118 |
small intestine | 2.35e-10 | 4 |
gland | 3.82e-09 | 59 |
endo-epithelium | 2.80e-08 | 82 |
digestive system | 3.16e-08 | 145 |
digestive tract | 3.16e-08 | 145 |
primitive gut | 3.16e-08 | 145 |
gastrointestinal system | 2.17e-07 | 25 |
endoderm-derived structure | 2.56e-07 | 160 |
endoderm | 2.56e-07 | 160 |
presumptive endoderm | 2.56e-07 | 160 |
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