FFCP PHASE1:Hg19::chr12:346702..346735,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6540|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11046|TSSclassifier=W|UniProt=|association_with_transcript=-295bp_to_ENST00000542379_5end|coexpression_cluster_id=C5|description=CAGE_peak_2_at_SLC6A13_5end|id=chr12:346702..346735,-|ontology_enrichment_celltype=CL:0000181!6.11e-22!12;CL:0000417!6.11e-22!12;CL:0000668!6.11e-22!12;CL:0000414!6.11e-22!12;CL:0000412!6.11e-22!12;CL:0000182!6.11e-22!12|ontology_enrichment_celltype_v019=CL:0000182;2.55e-09;12|ontology_enrichment_celltype_v019_2=CL:0000182,2.55e-09,12|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002107!1.07e-19!19;UBERON:0006925!1.07e-19!19;UBERON:0008836!1.07e-19!19;UBERON:0008835!5.75e-17!22;UBERON:0003894!5.75e-17!22;UBERON:0009854!3.25e-16!23;UBERON:0007499!6.88e-15!25;UBERON:0009497!6.88e-15!25;UBERON:0000015!6.88e-15!25;UBERON:0002423!6.88e-15!25;UBERON:0006235!6.88e-15!25;UBERON:0004161!6.88e-15!25;UBERON:0005172!2.33e-14!55;UBERON:0005173!2.33e-14!55;UBERON:0005057!2.66e-14!26;UBERON:0009856!2.66e-14!26;UBERON:0002417!7.80e-13!61;UBERON:0000916!7.80e-13!61;UBERON:0002365!6.19e-12!31;UBERON:0002330!6.19e-12!31;UBERON:0001301!8.64e-12!1;UBERON:0002368!1.59e-10!35;UBERON:0000949!4.31e-08!45;UBERON:0005177!8.26e-07!107|ontology_enrichment_uberon_v019=UBERON:0002107;1.70e-12;19!UBERON:0006925;1.70e-12;19!UBERON:0002423;1.17e-09;25!UBERON:0002365;3.73e-08;31!UBERON:0002330;3.73e-08;31!UBERON:0005172;4.86e-07;52!UBERON:0005173;4.86e-07;52|ontology_enrichment_uberon_v019_2=UBERON:0002107,1.70e-12,19;UBERON:0006925,1.70e-12,19;UBERON:0008836,1.70e-12,19;UBERON:0008835,6.93e-11,22;UBERON:0003894,6.93e-11,22;UBERON:0009854,1.93e-10,23;UBERON:0007499,1.17e-09,25;UBERON:0009497,1.17e-09,25;UBERON:0000015,1.17e-09,25;UBERON:0002423,1.17e-09,25;UBERON:0006235,1.17e-09,25;UBERON:0004161,1.17e-09,25;UBERON:0009856,2.59e-09,26;UBERON:0002365,6.54e-08,31;UBERON:0002330,6.54e-08,31;UBERON:0005172,8.93e-08,54;UBERON:0005173,8.93e-08,54;UBERON:0002368,4.48e-07,35;UBERON:0002417,4.94e-07,60;UBERON:0000916,4.94e-07,60|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.7457048750563,0.982827216677626,4.13552934676983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.86152700170411,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.7783536559281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14994833854341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288950589901519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0824158583811665,0.13480708770837,0,0,0,0,0,0,0,0,0,0,0,1.10327990218877,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,3.22414914091781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121917924982269,0,0,0,0,0,0,0,0,0,0,0.463044948647668,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p2@SLC6A13}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=6540 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11046 | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=-295bp_to_ENST00000542379_5end | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_2_at_SLC6A13_5end | |||
|id=chr12:346702..346735,- | |||
|ontology_enrichment_celltype=CL:0000181!6.11e-22!12;CL:0000417!6.11e-22!12;CL:0000668!6.11e-22!12;CL:0000414!6.11e-22!12;CL:0000412!6.11e-22!12;CL:0000182!6.11e-22!12 | |||
|ontology_enrichment_celltype_v019=CL:0000182;2.55e-09;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,2.55e-09,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!1.07e-19!19;UBERON:0006925!1.07e-19!19;UBERON:0008836!1.07e-19!19;UBERON:0008835!5.75e-17!22;UBERON:0003894!5.75e-17!22;UBERON:0009854!3.25e-16!23;UBERON:0007499!6.88e-15!25;UBERON:0009497!6.88e-15!25;UBERON:0000015!6.88e-15!25;UBERON:0002423!6.88e-15!25;UBERON:0006235!6.88e-15!25;UBERON:0004161!6.88e-15!25;UBERON:0005172!2.33e-14!55;UBERON:0005173!2.33e-14!55;UBERON:0005057!2.66e-14!26;UBERON:0009856!2.66e-14!26;UBERON:0002417!7.80e-13!61;UBERON:0000916!7.80e-13!61;UBERON:0002365!6.19e-12!31;UBERON:0002330!6.19e-12!31;UBERON:0001301!8.64e-12!1;UBERON:0002368!1.59e-10!35;UBERON:0000949!4.31e-08!45;UBERON:0005177!8.26e-07!107 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;1.70e-12;19!UBERON:0006925;1.70e-12;19!UBERON:0002423;1.17e-09;25!UBERON:0002365;3.73e-08;31!UBERON:0002330;3.73e-08;31!UBERON:0005172;4.86e-07;52!UBERON:0005173;4.86e-07;52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,1.70e-12,19;UBERON:0006925,1.70e-12,19;UBERON:0008836,1.70e-12,19;UBERON:0008835,6.93e-11,22;UBERON:0003894,6.93e-11,22;UBERON:0009854,1.93e-10,23;UBERON:0007499,1.17e-09,25;UBERON:0009497,1.17e-09,25;UBERON:0000015,1.17e-09,25;UBERON:0002423,1.17e-09,25;UBERON:0006235,1.17e-09,25;UBERON:0004161,1.17e-09,25;UBERON:0009856,2.59e-09,26;UBERON:0002365,6.54e-08,31;UBERON:0002330,6.54e-08,31;UBERON:0005172,8.93e-08,54;UBERON:0005173,8.93e-08,54;UBERON:0002368,4.48e-07,35;UBERON:0002417,4.94e-07,60;UBERON:0000916,4.94e-07,60 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.7457048750563,0.982827216677626,4.13552934676983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.86152700170411,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.7783536559281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14994833854341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288950589901519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0824158583811665,0.13480708770837,0,0,0,0,0,0,0,0,0,0,0,1.10327990218877,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,3.22414914091781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121917924982269,0,0,0,0,0,0,0,0,0,0,0.463044948647668,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p2@SLC6A13 | |||
}} |
Revision as of 22:31, 10 September 2013
Short description: | p2@SLC6A13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_SLC6A13_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | -295bp_to_ENST00000542379_5end |
EntrezGene: | SLC6A13 |
HGNC: | 11046 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 2.55e-09 | 12 |
Ontology term | p-value | n |
---|---|---|
liver | 1.70e-12 | 19 |
digestive gland | 1.70e-12 | 19 |
liver bud | 1.70e-12 | 19 |
hepatic diverticulum | 6.93e-11 | 22 |
liver primordium | 6.93e-11 | 22 |
digestive tract diverticulum | 1.93e-10 | 23 |
epithelial sac | 1.17e-09 | 25 |
epithelium of foregut-midgut junction | 1.17e-09 | 25 |
anatomical boundary | 1.17e-09 | 25 |
hepatobiliary system | 1.17e-09 | 25 |
foregut-midgut junction | 1.17e-09 | 25 |
septum transversum | 1.17e-09 | 25 |
sac | 2.59e-09 | 26 |
exocrine gland | 6.54e-08 | 31 |
exocrine system | 6.54e-08 | 31 |
abdomen element | 8.93e-08 | 54 |
abdominal segment element | 8.93e-08 | 54 |
endocrine gland | 4.48e-07 | 35 |
abdominal segment of trunk | 4.94e-07 | 60 |
abdomen | 4.94e-07 | 60 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.