FFCP PHASE1:Hg19::chr3:42201673..42201718,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=22906|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=29947|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_ENST00000469506_5end|description=CAGE_peak_2_at_TRAK1_5end|id=chr3:42201673..42201718,+|ontology_enrichment_celltype=CL:0000066!1.99e-23!254;CL:0002076!8.83e-07!43|ontology_enrichment_celltype_v019=CL:0002139;8.27e-07;24|ontology_enrichment_celltype_v019_2=CL:0000066,5.00e-26,253;CL:0000223,4.86e-08,58;CL:0002076,7.72e-08,42;CL:0002139,7.64e-07,24|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:305!1.44e-12!106|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=DOID:305,5.80e-14,106;DOID:0050687,6.03e-08,143|ontology_enrichment_uberon=UBERON:0004119!5.17e-14!169;UBERON:0000925!5.17e-14!169;UBERON:0006595!5.17e-14!169;UBERON:0001007!5.54e-11!155;UBERON:0001555!5.54e-11!155;UBERON:0007026!5.54e-11!155;UBERON:0004921!4.45e-10!129;UBERON:0004185!4.45e-10!129;UBERON:0000481!4.82e-10!347;UBERON:0001004!7.73e-10!72;UBERON:0000464!1.65e-09!104;UBERON:0000077!7.08e-09!130;UBERON:0000477!1.15e-08!286;UBERON:0000065!2.64e-08!53;UBERON:0000466!3.25e-08!126;UBERON:0004111!4.95e-08!241;UBERON:0000119!6.20e-08!312;UBERON:0000483!2.20e-07!309;UBERON:0001048!2.24e-07!168;UBERON:0008947!3.50e-07!38;UBERON:0003258!3.50e-07!38;UBERON:0003104!3.57e-07!238;UBERON:0009142!3.57e-07!238;UBERON:0001041!5.65e-07!98;UBERON:0000063!7.10e-07!97|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0004119,6.39e-14,160;UBERON:0000925,6.39e-14,160;UBERON:0006595,6.39e-14,160;UBERON:0001007,4.07e-11,145;UBERON:0001555,4.07e-11,145;UBERON:0007026,4.07e-11,145;UBERON:0004921,1.16e-10,118;UBERON:0001004,8.11e-10,74;UBERON:0000065,1.33e-08,54;UBERON:0005177,3.51e-08,101;UBERON:0008947,9.09e-08,38;UBERON:0003258,9.09e-08,38;UBERON:0001041,1.02e-07,87;UBERON:0005178,3.53e-07,34;UBERON:0002224,3.53e-07,34|phase1_expression=0,0,0.281908808191942,1.0007329835313,0,0,0,0,0,8.10921990454979,13.9560233594486,5.24259293112413,1.84636884759917,3.46545788288131,1.65698687863958,0,0,0,0.975865597581014,1.23121058076788,3.26401105990805,0.313454721478088,0.85870796139317,0.410623275218653,0.502170558379211,0,0,0,0,0.383829398097213,0.309632246632152,6.43594857135249,6.92773613189975,10.7228662948368,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0.309706370895104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0,0,0,0,1.81619850790011,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0,0,0,0.661044872784862,0,0,0,0,0,0,0.526768169550154,0,0.786021525498329,1.85041349099558,9.02807075109662,1.62961133316795,1.4203434172042,1.94826728407911,1.89397776704795,0.589211814949674,0.664601683750863,1.35401931882508,3.0741916734162,3.51160238411671,3.94650971048823,3.03985019564433,4.05724320029073,0.444859689486181,0.802622484269139,2.09071047609954,1.69964014046349,0,0.68725489096526,0.759059076058509,1.27426165729639,0,0,1.20460095262218,1.27986611154418,1.24930726552346,0.236777252044017,3.28451198768419,0.604820229674197,0,0.579297615531196,0,4.02420515822182,0.511450247374121,0.361439152384566,0.50133791063589,0,0,0,6.52290238432068,3.76939975686359,6.0606002128257,5.63210024640164,3.27865759463288,1.48313777113772,0.649094787309367,0.348259474598534,0.26591592103773,4.05434061319081,4.57595928624102,5.94332002127304,4.96906018416763,2.58070378531837,20.8284300964557,14.1326985481002,6.71199097935849,4.95212475492121,5.43386912995707,3.35941786920128,4.62496141492723,2.34304428935269,2.01414658554573,0.760272105718513,1.22031028774085,5.8826092855339,5.67099363517232,6.1616812516015,11.900056749187,17.116945033465,10.7321646226118,18.0360475317944,6.59526278149466,0,0,3.48875241714027,0.496971951695318,0.759783069987479,0.264818361626438,2.86836620748814,2.83734705758686,2.24271040056923,2.1349799145941,0.24666754841716,3.42332138939743,3.3677668017422,3.26923806226917,5.2975099675726,5.18558332031999,2.10889288650417,1.87296046098192,1.1409436430889,0.597794722207204,0.587172493218824,1.61872944368132,1.68540968042698,2.65400422631361,3.31652656741774,1.23990937410919,0,0.247266929278557,0.910161361938026,0,2.02003336744879,4.8796222750066,0.554128230968366,0,0.919463387397059,0.300476117813194,1.02088964844019,0.538168907066586,0,0.423863802319124,2.10063767259082,0.412210116953756,0,0.18611685633159,0,0.292311015483596,0.252433774244115,0,2.58633690910099,0,0.302256294682921,0.508681776931463,1.35282597214308,3.27295344709002,3.72845974005705,8.41618572294208,10.6023814657188,9.99267908677858,8.39654545624501,10.5974757367764,11.6792754904266,1.56449532329816,0,1.38134921352481,0.464367928031979,0,2.60274960087657,2.19160097101532,2.16909926895134,1.8749975364507,1.74303555273925,1.18635309555548,2.56179485504312,2.15843611637881,1.15424147083917,2.95262181849859,0,1.2347220339942,0,0,0,0,0,14.0206819939149,2.40194934417936,1.09750285408626,2.24803506515239,2.11110842064425,3.98130314181677,0.977424915930974,5.199673926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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=22906 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29947 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000469506_5end | |||
|description=CAGE_peak_2_at_TRAK1_5end | |||
|id=chr3:42201673..42201718,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.99e-23!254;CL:0002076!8.83e-07!43 | |||
|ontology_enrichment_celltype_v019=CL:0002139;8.27e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,5.00e-26,253;CL:0000223,4.86e-08,58;CL:0002076,7.72e-08,42;CL:0002139,7.64e-07,24 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!1.44e-12!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,5.80e-14,106;DOID:0050687,6.03e-08,143 | |||
|ontology_enrichment_uberon=UBERON:0004119!5.17e-14!169;UBERON:0000925!5.17e-14!169;UBERON:0006595!5.17e-14!169;UBERON:0001007!5.54e-11!155;UBERON:0001555!5.54e-11!155;UBERON:0007026!5.54e-11!155;UBERON:0004921!4.45e-10!129;UBERON:0004185!4.45e-10!129;UBERON:0000481!4.82e-10!347;UBERON:0001004!7.73e-10!72;UBERON:0000464!1.65e-09!104;UBERON:0000077!7.08e-09!130;UBERON:0000477!1.15e-08!286;UBERON:0000065!2.64e-08!53;UBERON:0000466!3.25e-08!126;UBERON:0004111!4.95e-08!241;UBERON:0000119!6.20e-08!312;UBERON:0000483!2.20e-07!309;UBERON:0001048!2.24e-07!168;UBERON:0008947!3.50e-07!38;UBERON:0003258!3.50e-07!38;UBERON:0003104!3.57e-07!238;UBERON:0009142!3.57e-07!238;UBERON:0001041!5.65e-07!98;UBERON:0000063!7.10e-07!97 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,6.39e-14,160;UBERON:0000925,6.39e-14,160;UBERON:0006595,6.39e-14,160;UBERON:0001007,4.07e-11,145;UBERON:0001555,4.07e-11,145;UBERON:0007026,4.07e-11,145;UBERON:0004921,1.16e-10,118;UBERON:0001004,8.11e-10,74;UBERON:0000065,1.33e-08,54;UBERON:0005177,3.51e-08,101;UBERON:0008947,9.09e-08,38;UBERON:0003258,9.09e-08,38;UBERON:0001041,1.02e-07,87;UBERON:0005178,3.53e-07,34;UBERON:0002224,3.53e-07,34 | |||
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| |||
|short_description=p2@TRAK1 | |||
}} |
Revision as of 00:07, 13 September 2013
Short description: | p2@TRAK1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_TRAK1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000469506_5end |
EntrezGene: | TRAK1 |
HGNC: | 29947 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 5.00e-26 | 253 |
endodermal cell | 4.86e-08 | 58 |
endo-epithelial cell | 7.72e-08 | 42 |
endothelial cell of vascular tree | 7.64e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 6.39e-14 | 160 |
endoderm | 6.39e-14 | 160 |
presumptive endoderm | 6.39e-14 | 160 |
digestive system | 4.07e-11 | 145 |
digestive tract | 4.07e-11 | 145 |
primitive gut | 4.07e-11 | 145 |
subdivision of digestive tract | 1.16e-10 | 118 |
respiratory system | 8.11e-10 | 74 |
respiratory tract | 1.33e-08 | 54 |
trunk region element | 3.51e-08 | 101 |
respiratory primordium | 9.09e-08 | 38 |
endoderm of foregut | 9.09e-08 | 38 |
foregut | 1.02e-07 | 87 |
thoracic cavity element | 3.53e-07 | 34 |
thoracic cavity | 3.53e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 5.80e-14 | 106 |
cell type cancer | 6.03e-08 | 143 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.