FFCP PHASE1:Hg19::chr3:154797454..154797484,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4311|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=7154|TSSclassifier=S|UniProt=P08473|association_with_transcript=18bp_to_ENST00000460393,ENST00000491597,NM_000902,uc003fab.1_5end|coexpression_cluster_id=C1513|description=CAGE_peak_2_at_MME_5end|id=chr3:154797454..154797484,+|ontology_enrichment_celltype=CL:0000055!6.15e-26!180;CL:0000057!1.23e-13!75;CL:0000680!7.60e-12!57;CL:0000056!7.60e-12!57;CL:0000355!7.60e-12!57;CL:0000187!1.33e-10!54;CL:0000048!1.71e-10!430;CL:0002620!7.94e-10!23;CL:0000723!1.97e-09!436;CL:0000034!2.85e-09!444;CL:0000393!6.86e-09!60;CL:0000211!6.86e-09!60;CL:0000183!3.50e-08!59;CL:0000192!8.87e-07!42;CL:0000514!8.87e-07!42|ontology_enrichment_celltype_v019=CL:0002620;3.84e-11;23!CL:0000723;1.36e-08;61!CL:0000134;1.35e-07;55!CL:0000048;1.44e-07;58!CL:0000034;5.27e-07;69!CL:0000187;6.25e-07;55|ontology_enrichment_celltype_v019_2=CL:0000057,8.56e-15,76;CL:0000680,1.46e-13,58;CL:0000056,1.46e-13,58;CL:0000355,1.46e-13,58;CL:0000048,3.71e-13,427;CL:0000723,2.95e-12,433;CL:0000187,3.76e-12,55;CL:0000034,6.70e-12,441;CL:0002620,4.14e-11,23;CL:0000393,3.00e-09,61;CL:0000211,3.00e-09,61;CL:0000192,8.24e-08,43;CL:0000514,8.24e-08,43|ontology_enrichment_development_v019=CL:0000355;1.53e-07;58|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000914!5.75e-18!83;UBERON:0002329!5.75e-18!83;UBERON:0003077!5.75e-18!83;UBERON:0003059!5.75e-18!83;UBERON:0007282!5.75e-18!83;UBERON:0009618!5.75e-18!83;UBERON:0007285!5.75e-18!83;UBERON:0004290!6.04e-16!70;UBERON:0000486!4.52e-13!82;UBERON:0001134!2.94e-12!61;UBERON:0002036!2.94e-12!61;UBERON:0003082!2.94e-12!61;UBERON:0002385!1.31e-11!63;UBERON:0001015!1.31e-11!63;UBERON:0000383!1.31e-11!63;UBERON:0003102!1.39e-09!95;UBERON:0005256!9.16e-09!143;UBERON:0002199!2.46e-08!45;UBERON:0002416!2.46e-08!45;UBERON:0002097!2.56e-07!40;UBERON:0002100!6.36e-07!216;UBERON:0000475!8.71e-07!365|ontology_enrichment_uberon_v019=UBERON:0002385;2.08e-09;31!UBERON:0001015;2.08e-09;31!UBERON:0000383;2.08e-09;31!UBERON:0001134;9.43e-08;16!UBERON:0002036;9.43e-08;16!UBERON:0002097;3.44e-07;41|ontology_enrichment_uberon_v019_2=UBERON:0002329,3.32e-18,71;UBERON:0003059,3.32e-18,71;UBERON:0007282,3.32e-18,71;UBERON:0004290,3.32e-18,71;UBERON:0009618,3.32e-18,71;UBERON:0007524,4.08e-18,73;UBERON:0003077,1.37e-17,72;UBERON:0007285,1.37e-17,72;UBERON:0000486,2.36e-15,83;UBERON:0007503,2.70e-14,78;UBERON:0001134,5.02e-14,62;UBERON:0002036,5.02e-14,62;UBERON:0003082,5.02e-14,62;UBERON:0002385,1.92e-13,64;UBERON:0001015,1.92e-13,64;UBERON:0000383,1.92e-13,64;UBERON:0003102,4.83e-11,99;UBERON:0002199,1.98e-10,46;UBERON:0002416,1.98e-10,46;UBERON:0002097,2.91e-09,41;UBERON:0005256,4.67e-09,122;UBERON:0003104,1.99e-08,160;UBERON:0009142,1.99e-08,160|phase1_expression=39.4242083017108,42.8201047781966,7.47058341708647,15.0109947529696,0.893922188854576,0.872338524100369,12.6649939084155,10.7392378482561,6.00726944859629,0.491467873003018,0,2.18441372130172,0.791300934685361,2.72285976512103,1.32558950291166,6.72325146451775,12.0538905604795,6.57279081348636,5.85519358548608,0.369363174230364,0.204000691244253,0,1.43117993565528,0.821246550437305,3.13856598987007,0,0,0,0,0,0,0,0,0.369754010166788,37.8814610837675,17.4868155959528,2.93600439334847,0,0,0.217010870715852,0.447830948479849,0,0,1.74477886535478,0.377875943688809,2.66842467306598,1.16214518452842,0,0.929119112685311,0.863077176966451,0,2.12834006899727,1.03423704220986,0,1.35426486594342,1.31769637679823,0.272906150057846,2.69668181334102,2.14258724659632,0.320929027076094,5.75403413219137,1.31940520074686,0.797854630486527,1.27867425159808,1.45104619314292,0.56738522469114,0.622822248995575,1.00499466102697,0,3.47502151528187,2.42159801053347,0.736555271975129,2.53169909952708,0.211255286311942,0,0,0,0.150176892841506,0.48217676009124,0,0,0,1.75996244461323,1.09227722252426,0.889509253863555,2.56038133539904,0.800791974072025,0.574752439954483,0.661044872784862,0.954053754535364,0.569212969109448,0,0,13.2171328579026,2.24203425192614,5.79444986505169,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.506039384039006,0.318565414324097,0,0,0.602300476311091,0.127986611154418,1.24930726552346,2.8413270245282,0.821127996921047,0,0,0,2.43806866313962,5.36560687762909,5.4980901592718,0,4.51204119572301,2.31754430337318,9.54343136461319,0.973269740605272,2.45790524626576,1.55210578223795,0.527008714158756,1.44076983047484,0,0,0.324547393654683,0.348259474598534,0.132957960518865,1.90792499444274,0.571994910780128,0,0.993812036833525,3.4409383804245,0.347140501607594,0,0.838998872419812,0.275118041940067,0.417989933073621,2.06733407335463,3.5576626268671,3.3472061276467,0,0,0,2.57364156242108,0,1.51809538082936,0.673588117878509,0.337834441449967,0,0,0.366403487860815,137.051634133506,395.535869431292,0,0,2.65924074495618,10.9899620074972,11.1866282092037,2.4826786753885,0,1.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=4311 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7154 | |||
|TSSclassifier=S | |||
|UniProt=P08473 | |||
|association_with_transcript=18bp_to_ENST00000460393,ENST00000491597,NM_000902,uc003fab.1_5end | |||
|coexpression_cluster_id=C1513 | |||
|description=CAGE_peak_2_at_MME_5end | |||
|id=chr3:154797454..154797484,+ | |||
|ontology_enrichment_celltype=CL:0000055!6.15e-26!180;CL:0000057!1.23e-13!75;CL:0000680!7.60e-12!57;CL:0000056!7.60e-12!57;CL:0000355!7.60e-12!57;CL:0000187!1.33e-10!54;CL:0000048!1.71e-10!430;CL:0002620!7.94e-10!23;CL:0000723!1.97e-09!436;CL:0000034!2.85e-09!444;CL:0000393!6.86e-09!60;CL:0000211!6.86e-09!60;CL:0000183!3.50e-08!59;CL:0000192!8.87e-07!42;CL:0000514!8.87e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0002620;3.84e-11;23!CL:0000723;1.36e-08;61!CL:0000134;1.35e-07;55!CL:0000048;1.44e-07;58!CL:0000034;5.27e-07;69!CL:0000187;6.25e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,8.56e-15,76;CL:0000680,1.46e-13,58;CL:0000056,1.46e-13,58;CL:0000355,1.46e-13,58;CL:0000048,3.71e-13,427;CL:0000723,2.95e-12,433;CL:0000187,3.76e-12,55;CL:0000034,6.70e-12,441;CL:0002620,4.14e-11,23;CL:0000393,3.00e-09,61;CL:0000211,3.00e-09,61;CL:0000192,8.24e-08,43;CL:0000514,8.24e-08,43 | |||
|ontology_enrichment_development_v019=CL:0000355;1.53e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!5.75e-18!83;UBERON:0002329!5.75e-18!83;UBERON:0003077!5.75e-18!83;UBERON:0003059!5.75e-18!83;UBERON:0007282!5.75e-18!83;UBERON:0009618!5.75e-18!83;UBERON:0007285!5.75e-18!83;UBERON:0004290!6.04e-16!70;UBERON:0000486!4.52e-13!82;UBERON:0001134!2.94e-12!61;UBERON:0002036!2.94e-12!61;UBERON:0003082!2.94e-12!61;UBERON:0002385!1.31e-11!63;UBERON:0001015!1.31e-11!63;UBERON:0000383!1.31e-11!63;UBERON:0003102!1.39e-09!95;UBERON:0005256!9.16e-09!143;UBERON:0002199!2.46e-08!45;UBERON:0002416!2.46e-08!45;UBERON:0002097!2.56e-07!40;UBERON:0002100!6.36e-07!216;UBERON:0000475!8.71e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;2.08e-09;31!UBERON:0001015;2.08e-09;31!UBERON:0000383;2.08e-09;31!UBERON:0001134;9.43e-08;16!UBERON:0002036;9.43e-08;16!UBERON:0002097;3.44e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002329,3.32e-18,71;UBERON:0003059,3.32e-18,71;UBERON:0007282,3.32e-18,71;UBERON:0004290,3.32e-18,71;UBERON:0009618,3.32e-18,71;UBERON:0007524,4.08e-18,73;UBERON:0003077,1.37e-17,72;UBERON:0007285,1.37e-17,72;UBERON:0000486,2.36e-15,83;UBERON:0007503,2.70e-14,78;UBERON:0001134,5.02e-14,62;UBERON:0002036,5.02e-14,62;UBERON:0003082,5.02e-14,62;UBERON:0002385,1.92e-13,64;UBERON:0001015,1.92e-13,64;UBERON:0000383,1.92e-13,64;UBERON:0003102,4.83e-11,99;UBERON:0002199,1.98e-10,46;UBERON:0002416,1.98e-10,46;UBERON:0002097,2.91e-09,41;UBERON:0005256,4.67e-09,122;UBERON:0003104,1.99e-08,160;UBERON:0009142,1.99e-08,160 | |||
|phase1_expression=39.4242083017108,42.8201047781966,7.47058341708647,15.0109947529696,0.893922188854576,0.872338524100369,12.6649939084155,10.7392378482561,6.00726944859629,0.491467873003018,0,2.18441372130172,0.791300934685361,2.72285976512103,1.32558950291166,6.72325146451775,12.0538905604795,6.57279081348636,5.85519358548608,0.369363174230364,0.204000691244253,0,1.43117993565528,0.821246550437305,3.13856598987007,0,0,0,0,0,0,0,0,0.369754010166788,37.8814610837675,17.4868155959528,2.93600439334847,0,0,0.217010870715852,0.447830948479849,0,0,1.74477886535478,0.377875943688809,2.66842467306598,1.16214518452842,0,0.929119112685311,0.863077176966451,0,2.12834006899727,1.03423704220986,0,1.35426486594342,1.31769637679823,0.272906150057846,2.69668181334102,2.14258724659632,0.320929027076094,5.75403413219137,1.31940520074686,0.797854630486527,1.27867425159808,1.45104619314292,0.56738522469114,0.622822248995575,1.00499466102697,0,3.47502151528187,2.42159801053347,0.736555271975129,2.53169909952708,0.211255286311942,0,0,0,0.150176892841506,0.48217676009124,0,0,0,1.75996244461323,1.09227722252426,0.889509253863555,2.56038133539904,0.800791974072025,0.574752439954483,0.661044872784862,0.954053754535364,0.569212969109448,0,0,13.2171328579026,2.24203425192614,5.79444986505169,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.506039384039006,0.318565414324097,0,0,0.602300476311091,0.127986611154418,1.24930726552346,2.8413270245282,0.821127996921047,0,0,0,2.43806866313962,5.36560687762909,5.4980901592718,0,4.51204119572301,2.31754430337318,9.54343136461319,0.973269740605272,2.45790524626576,1.55210578223795,0.527008714158756,1.44076983047484,0,0,0.324547393654683,0.348259474598534,0.132957960518865,1.90792499444274,0.571994910780128,0,0.993812036833525,3.4409383804245,0.347140501607594,0,0.838998872419812,0.275118041940067,0.417989933073621,2.06733407335463,3.5576626268671,3.3472061276467,0,0,0,2.57364156242108,0,1.51809538082936,0.673588117878509,0.337834441449967,0,0,0.366403487860815,137.051634133506,395.535869431292,0,0,2.65924074495618,10.9899620074972,11.1866282092037,2.4826786753885,0,1.06748995729705,0.49333509683432,11.5148083097914,4.17603083416033,7.35578564010564,0.151357427644931,1.15235184896,9.60717870518566,35.8984088354869,15.4027391817001,24.5095836104954,48.5004479398749,37.2307772046703,33.7081936085396,13.2700211315681,18.9164848660123,13.639003115201,149.688360017539,63.053066966032,0.910161361938026,0.718618141816238,51.0058425280821,27.1507188122162,27.7064115484183,17.1201272143527,4.59731693698529,44.9211796130724,3.51639767796065,14.7099501264867,115.534547350845,79.0505991325166,3.00091096084402,23.3929241371256,38.1307999267531,33.6871509960178,20.7594888656757,24.5541253006221,8.83518209854401,50.7194941519069,6.46584227275248,14.5553932931812,7.15339897416246,6.78242369241951,1.15956511897978,1.63647672354501,0,0,0.265059536642971,0,0.10366105501537,0.756962552626885,0.36497735907583,26.5964204960687,13.5080597020506,4.14404764057442,42.2574814509101,31.0408177117922,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0.4115740113314,0,0,0,0,32.2268062572695,0.491953754172454,14.0685604444791,0,0,0,1.29623823221941,15.3129903495853,0,0,0.579652024875384,1.40890433082986,0.144366447761074,0,0.190254152234598,0,0,0.246217006087397,0.936017060556951,0.297262324577456,3.74935335947108,1.51183915378974,0,1.61205340865127,0.871901815541886,0.383382679165211,0.492663237895943,0.352193736052904,1.86595303986695,1.29707958075265,0.25248486685276,56.8306153914913,30.1770856191039,2.34434894420094,10.2643467613623,19.1259136428182,90.4032604110192,3.14409075893636,1.34557301214433,0,3.74025257686845,19.0029422163933,17.8828222925941,16.060752298564,24.9981829589778,13.5209667984776,2.05765899409714,0,0.799266537048298,24.0203029345688,46.6654580636641,55.1571025643115,22.8015329005615,15.2818537959295,93.4503210061446,0,0.871533458600294,0,0,0,2.10833939483032,0.958499421966331,0,9.98458335285029,24.1784782134857,12.5340556755734,59.2691788324054,0,0,0.215627574859517,0,2.03275699377971,0,0,0.167516265334349,0.637938751653163,403.714785907531,338.052448900548,673.839624846994,3.18997878469764,1.50051156317903,7.5954206635926,1.24782516918484,3.39015078714607,4.41566762095017,0.585707074963566,33.4050170697768,15.9185252839189,9.31257641632544,1.99267679560631,1.65932251687533,137.362994474039,0,0,0.620304078368662,5.1771408196468,0.213455115606889,1.5156378572313,3.32870879020994,3.32629322662648,29.5248291304344,48.1870596124516,51.9221174701186,6.66323576129645,26.6087769514686,0.482561763430822,0,5.39733928309294,2.48586415438378,8.45909706942234,5.71179872101983,3.48631135379878,0.362578348774867,1.20303882181971,2.30202472339741,11.5962592646253,12.9284729284769,10.8833264416322,1.80479845162965,4.92898157468254,0,0,1.58327443339314,0,0.510281115829547,0.215915916102139,0,0,0,0,0,0.447749509444357,0,0,4.10320200186223,1.96808787419823,15.2927845492222,2.26690225624989,19.0464486822154,27.063115973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| |||
|short_description=p2@MME | |||
}} |
Revision as of 22:16, 12 September 2013
Short description: | p2@MME |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_MME_5end |
Coexpression cluster: | C1513_Smooth_Neutrophils_Eosinophils_Pancreatic_Mesenchymal_Skeletal_mesenchymal |
Association with transcript: | 18bp_to_ENST00000460393, ENST00000491597, NM_000902, uc003fab.1_5end |
EntrezGene: | MME |
HGNC: | 7154 |
UniProt: | P08473 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 8.56e-15 | 76 |
muscle precursor cell | 1.46e-13 | 58 |
myoblast | 1.46e-13 | 58 |
multi-potent skeletal muscle stem cell | 1.46e-13 | 58 |
multi fate stem cell | 3.71e-13 | 427 |
somatic stem cell | 2.95e-12 | 433 |
muscle cell | 3.76e-12 | 55 |
stem cell | 6.70e-12 | 441 |
skin fibroblast | 4.14e-11 | 23 |
electrically responsive cell | 3.00e-09 | 61 |
electrically active cell | 3.00e-09 | 61 |
smooth muscle cell | 8.24e-08 | 43 |
smooth muscle myoblast | 8.24e-08 | 43 |
Ontology term | p-value | n |
---|---|---|
somite | 3.32e-18 | 71 |
presomitic mesoderm | 3.32e-18 | 71 |
presumptive segmental plate | 3.32e-18 | 71 |
dermomyotome | 3.32e-18 | 71 |
trunk paraxial mesoderm | 3.32e-18 | 71 |
dense mesenchyme tissue | 4.08e-18 | 73 |
paraxial mesoderm | 1.37e-17 | 72 |
presumptive paraxial mesoderm | 1.37e-17 | 72 |
multilaminar epithelium | 2.36e-15 | 83 |
epithelial vesicle | 2.70e-14 | 78 |
skeletal muscle tissue | 5.02e-14 | 62 |
striated muscle tissue | 5.02e-14 | 62 |
myotome | 5.02e-14 | 62 |
muscle tissue | 1.92e-13 | 64 |
musculature | 1.92e-13 | 64 |
musculature of body | 1.92e-13 | 64 |
surface structure | 4.83e-11 | 99 |
integument | 1.98e-10 | 46 |
integumental system | 1.98e-10 | 46 |
skin of body | 2.91e-09 | 41 |
trunk mesenchyme | 4.67e-09 | 122 |
mesenchyme | 1.99e-08 | 160 |
entire embryonic mesenchyme | 1.99e-08 | 160 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.