FFCP PHASE1:Hg19::chr8:143781883..143781895,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=54742|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=24225|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_ENST00000522591_5end|coexpression_cluster_id=C106|description=CAGE_peak_6_at_LY6K_5end|id=chr8:143781883..143781895,+|ontology_enrichment_celltype=CL:0000066!5.63e-09!254;CL:0002150!2.41e-08!3;CL:0000861!2.41e-08!3|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=CL:0000066,2.22e-10,253|ontology_enrichment_development_v019=UBERON:0008947;2.00e-29;29!UBERON:0000358;8.05e-09;1!UBERON:0006595;5.55e-07;86|ontology_enrichment_disease=DOID:305!5.65e-18!106;DOID:0050687!3.81e-15!143;DOID:1749!1.15e-11!14;DOID:162!8.87e-08!235;DOID:4362!1.46e-07!5;DOID:14566!2.16e-07!239|ontology_enrichment_disease_v019=DOID:305;2.52e-08;106!DOID:3908;8.91e-07;5|ontology_enrichment_disease_v019_2=DOID:305,1.10e-24,106;DOID:0050687,2.42e-17,143;DOID:162,3.48e-10,235;DOID:14566,6.83e-10,239;DOID:3908,8.92e-07,5|ontology_enrichment_uberon=UBERON:0001737!2.63e-21!9;UBERON:0008947!1.11e-11!38;UBERON:0003258!1.11e-11!38;UBERON:0001557!3.65e-11!19;UBERON:0000072!2.49e-10!46;UBERON:0001004!1.78e-08!72;UBERON:0000065!2.25e-08!53;UBERON:0003729!2.68e-07!5;UBERON:0000077!3.57e-07!130;UBERON:0001007!3.97e-07!155;UBERON:0001555!3.97e-07!155;UBERON:0007026!3.97e-07!155;UBERON:0004119!4.65e-07!169;UBERON:0000925!4.65e-07!169;UBERON:0006595!4.65e-07!169;UBERON:0001041!6.34e-07!98|ontology_enrichment_uberon_v019=UBERON:0001737;1.41e-66;9!UBERON:0001557;1.41e-66;9!UBERON:0000072;1.23e-19;37!UBERON:0000065;2.93e-15;44!UBERON:0001004;1.70e-10;65|ontology_enrichment_uberon_v019_2=UBERON:0001737,1.36e-66,9;UBERON:0001557,2.76e-38,19;UBERON:0008947,5.12e-22,38;UBERON:0003258,5.12e-22,38;UBERON:0000072,6.11e-21,47;UBERON:0000065,6.02e-18,54;UBERON:0001004,1.63e-12,74;UBERON:0001041,3.43e-12,87;UBERON:0004921,2.37e-11,118;UBERON:0004119,7.22e-09,160;UBERON:0000925,7.22e-09,160;UBERON:0006595,7.22e-09,160;UBERON:0001007,9.87e-09,145;UBERON:0001555,9.87e-09,145;UBERON:0007026,9.87e-09,145|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0.662794751455832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392937226493138,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0.103052529238439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0,0,0,0,0,0,0,0,0,3.785817601275,2.02301628093722,3.13314338848527,2.97793726377464,3.05031221729369,2.37270619111097,3.37078270400411,3.33576490713088,2.30848294167834,0,1.40241773803446,0.4115740113314,0,0,0,0,0,0,0,0,0,0.603173834469785,0.0925884451585296,0,0,0,0,0,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0.290633938513962,1.53353071666084,0,0,0,0,0,0,0,0,0,0,0,0,0,0.43596006883328,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116210378459959,0,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0.308097234229289,0,0.137836572484531,0,0,0.170453254832202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0.755798243562828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.455173793141999,1.5255219017566,0.236387681767936,0,0,0,0,0,0,0,0,0,1.52513848926586,0.278847488557207,0,0,0,0,0.108647371922008,0,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.802577647298789,0,0,0,0,0,0,0,0,0,0,0,0,1.2557316736289,1.19472429772959,0,0,0,0.489961987071888,1.30588809870604,0,0.171986032471617,4.83781656445426,2.48503678093031,5.41962016551181,0.0969890164884194,0,0,0.548167698587004,0,0,0.391102765469606,0,0,0.599428828746391,0,0,0,0,0.248505071130865,2.82832841540154,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236417121897595,0,0.633602019116439,0,2.1110671705139,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26446520348538,0,0,0,0,0,0,0,0,0,0.544017803369474,0.5013797880454,0,0.327872630709804,0,0,0,0,0,0,0,0,0,0,0,0.941063278792687,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.800055529326307,0,0,0,0,0,0,0,0,0.244736704506468,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0.159633859057151,0,0,0,0,0,0.687034029507179,0,0.550285795565037,6.58496297056928,0,0.690359926060101,0.198916222116275,0,0.60511520611056,0,0,0,0,0,0,0,0,0,0,0,0,3.06629826335029,0,0,0,0,0,0,0,0,0,1.77290761325952,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0.17071847709395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0,0,0,0,0,0.722172300202514,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0.752122617877125,0.606229585745915,0.267964130156178,0,0,0.213233981900981,0,0,0,0,0,0,0,0,0,0.0717222053926763,0.332660356546013,0.162806537221949,1.49418284228802,0,0,2.34640942403454,0,0,0,0,0|short_description=p6@LY6K}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=54742 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24225 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000522591_5end | |||
|coexpression_cluster_id=C106 | |||
|description=CAGE_peak_6_at_LY6K_5end | |||
|id=chr8:143781883..143781895,+ | |||
|ontology_enrichment_celltype=CL:0000066!5.63e-09!254;CL:0002150!2.41e-08!3;CL:0000861!2.41e-08!3 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.22e-10,253 | |||
|ontology_enrichment_development_v019=UBERON:0008947;2.00e-29;29!UBERON:0000358;8.05e-09;1!UBERON:0006595;5.55e-07;86 | |||
|ontology_enrichment_disease=DOID:305!5.65e-18!106;DOID:0050687!3.81e-15!143;DOID:1749!1.15e-11!14;DOID:162!8.87e-08!235;DOID:4362!1.46e-07!5;DOID:14566!2.16e-07!239 | |||
|ontology_enrichment_disease_v019=DOID:305;2.52e-08;106!DOID:3908;8.91e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.10e-24,106;DOID:0050687,2.42e-17,143;DOID:162,3.48e-10,235;DOID:14566,6.83e-10,239;DOID:3908,8.92e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0001737!2.63e-21!9;UBERON:0008947!1.11e-11!38;UBERON:0003258!1.11e-11!38;UBERON:0001557!3.65e-11!19;UBERON:0000072!2.49e-10!46;UBERON:0001004!1.78e-08!72;UBERON:0000065!2.25e-08!53;UBERON:0003729!2.68e-07!5;UBERON:0000077!3.57e-07!130;UBERON:0001007!3.97e-07!155;UBERON:0001555!3.97e-07!155;UBERON:0007026!3.97e-07!155;UBERON:0004119!4.65e-07!169;UBERON:0000925!4.65e-07!169;UBERON:0006595!4.65e-07!169;UBERON:0001041!6.34e-07!98 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.41e-66;9!UBERON:0001557;1.41e-66;9!UBERON:0000072;1.23e-19;37!UBERON:0000065;2.93e-15;44!UBERON:0001004;1.70e-10;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,1.36e-66,9;UBERON:0001557,2.76e-38,19;UBERON:0008947,5.12e-22,38;UBERON:0003258,5.12e-22,38;UBERON:0000072,6.11e-21,47;UBERON:0000065,6.02e-18,54;UBERON:0001004,1.63e-12,74;UBERON:0001041,3.43e-12,87;UBERON:0004921,2.37e-11,118;UBERON:0004119,7.22e-09,160;UBERON:0000925,7.22e-09,160;UBERON:0006595,7.22e-09,160;UBERON:0001007,9.87e-09,145;UBERON:0001555,9.87e-09,145;UBERON:0007026,9.87e-09,145 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0.662794751455832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392937226493138,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0.103052529238439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0,0,0,0,0,0,0,0,0,3.785817601275,2.02301628093722,3.13314338848527,2.97793726377464,3.05031221729369,2.37270619111097,3.37078270400411,3.33576490713088,2.30848294167834,0,1.40241773803446,0.4115740113314,0,0,0,0,0,0,0,0,0,0.603173834469785,0.0925884451585296,0,0,0,0,0,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0.290633938513962,1.53353071666084,0,0,0,0,0,0,0,0,0,0,0,0,0,0.43596006883328,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116210378459959,0,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0.308097234229289,0,0.137836572484531,0,0,0.170453254832202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0.755798243562828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.455173793141999,1.5255219017566,0.236387681767936,0,0,0,0,0,0,0,0,0,1.52513848926586,0.278847488557207,0,0,0,0,0.108647371922008,0,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.802577647298789,0,0,0,0,0,0,0,0,0,0,0,0,1.2557316736289,1.19472429772959,0,0,0,0.489961987071888,1.30588809870604,0,0.171986032471617,4.83781656445426,2.48503678093031,5.41962016551181,0.0969890164884194,0,0,0.548167698587004,0,0,0.391102765469606,0,0,0.599428828746391,0,0,0,0,0.248505071130865,2.82832841540154,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236417121897595,0,0.633602019116439,0,2.1110671705139,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26446520348538,0,0,0,0,0,0,0,0,0,0.544017803369474,0.5013797880454,0,0.327872630709804,0,0,0,0,0,0,0,0,0,0,0,0.941063278792687,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.800055529326307,0,0,0,0,0,0,0,0,0.244736704506468,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0.159633859057151,0,0,0,0,0,0.687034029507179,0,0.550285795565037,6.58496297056928,0,0.690359926060101,0.198916222116275,0,0.60511520611056,0,0,0,0,0,0,0,0,0,0,0,0,3.06629826335029,0,0,0,0,0,0,0,0,0,1.77290761325952,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0.17071847709395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0,0,0,0,0,0.722172300202514,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0.752122617877125,0.606229585745915,0.267964130156178,0,0,0.213233981900981,0,0,0,0,0,0,0,0,0,0.0717222053926763,0.332660356546013,0.162806537221949,1.49418284228802,0,0,2.34640942403454,0,0,0,0,0 | |||
|short_description=p6@LY6K | |||
}} |
Revision as of 04:04, 14 September 2013
Short description: | p6@LY6K |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_LY6K_5end |
Coexpression cluster: | C106_Hep2_epitheloid_placenta_cervical_rectal_anaplastic_glassy |
Association with transcript: | 0bp_to_ENST00000522591_5end |
EntrezGene: | LY6K |
HGNC: | 24225 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.22e-10 | 253 |
Ontology term | p-value | n |
---|---|---|
larynx | 1.36e-66 | 9 |
upper respiratory tract | 2.76e-38 | 19 |
respiratory primordium | 5.12e-22 | 38 |
endoderm of foregut | 5.12e-22 | 38 |
segment of respiratory tract | 6.11e-21 | 47 |
respiratory tract | 6.02e-18 | 54 |
respiratory system | 1.63e-12 | 74 |
foregut | 3.43e-12 | 87 |
subdivision of digestive tract | 2.37e-11 | 118 |
endoderm-derived structure | 7.22e-09 | 160 |
endoderm | 7.22e-09 | 160 |
presumptive endoderm | 7.22e-09 | 160 |
digestive system | 9.87e-09 | 145 |
digestive tract | 9.87e-09 | 145 |
primitive gut | 9.87e-09 | 145 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.10e-24 | 106 |
cell type cancer | 2.42e-17 | 143 |
cancer | 3.48e-10 | 235 |
disease of cellular proliferation | 6.83e-10 | 239 |
non-small cell lung carcinoma | 8.92e-07 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.