FFCP PHASE1:Hg19::chr11:69466948..69466985,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=595 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=1582 | |||
|TSSclassifier=not | |||
|UniProt= | |||
|association_with_transcript=-379bp_to_AB075505_5end | |||
|coexpression_cluster_id=C1350 | |||
|description=CAGE_peak_10_at_CCND1_5end | |||
|id=chr11:69466948..69466985,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.59e-18!180;CL:0000192!5.22e-14!42;CL:0000514!5.22e-14!42;CL:0000359!1.88e-13!32;CL:0000220!4.00e-13!246;CL:0002321!4.44e-13!248;CL:0000183!1.83e-11!59;CL:0000680!1.93e-11!57;CL:0000056!1.93e-11!57;CL:0000355!1.93e-11!57;CL:0000187!1.71e-10!54;CL:0000393!1.12e-08!60;CL:0000211!1.12e-08!60;CL:0000222!1.98e-08!119;CL:0000147!1.03e-07!14;CL:0000057!7.24e-07!75;CL:0000066!7.74e-07!254 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.12e-15;32!CL:0000192;4.12e-10;43!CL:0000147;1.56e-09;14!CL:0000148;3.24e-08;10!CL:0002595;3.44e-08;5!CL:0002567;4.90e-08;3!CL:0002539;9.62e-08;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,1.99e-16,32;CL:0000192,3.52e-14,43;CL:0000514,3.52e-14,43;CL:0000680,1.89e-10,58;CL:0000056,1.89e-10,58;CL:0000355,1.89e-10,58;CL:0000187,5.37e-10,55;CL:0000147,2.14e-09,14;CL:0000393,1.51e-08,61;CL:0000211,1.51e-08,61;CL:0002539,3.49e-08,10;CL:0000148,5.47e-08,10;CL:0000541,5.47e-08,10;CL:0002595,6.67e-08,5;CL:0002567,7.55e-08,3 | |||
|ontology_enrichment_development_v019=CL:0000514;4.12e-10;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060084;1.79e-08;3!DOID:127;1.79e-08;3 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,1.41e-08,3;DOID:127,1.41e-08,3 | |||
|ontology_enrichment_uberon=UBERON:0005256!2.20e-16!143;UBERON:0002100!4.85e-15!216;UBERON:0003914!6.69e-13!118;UBERON:0002049!1.72e-12!79;UBERON:0007798!1.72e-12!79;UBERON:0000055!4.64e-12!69;UBERON:0000914!7.29e-12!83;UBERON:0002329!7.29e-12!83;UBERON:0003077!7.29e-12!83;UBERON:0003059!7.29e-12!83;UBERON:0007282!7.29e-12!83;UBERON:0009618!7.29e-12!83;UBERON:0007285!7.29e-12!83;UBERON:0001637!3.21e-11!42;UBERON:0003509!3.21e-11!42;UBERON:0004572!3.21e-11!42;UBERON:0003104!7.87e-11!238;UBERON:0009142!7.87e-11!238;UBERON:0004290!2.32e-10!70;UBERON:0001981!2.35e-10!60;UBERON:0007500!2.35e-10!60;UBERON:0004537!2.35e-10!60;UBERON:0006965!2.35e-10!60;UBERON:0001134!2.55e-10!61;UBERON:0002036!2.55e-10!61;UBERON:0003082!2.55e-10!61;UBERON:0000475!2.86e-10!365;UBERON:0002385!3.00e-10!63;UBERON:0001015!3.00e-10!63;UBERON:0000383!3.00e-10!63;UBERON:0000490!8.96e-10!138;UBERON:0004872!4.44e-09!84;UBERON:0004573!5.45e-09!33;UBERON:0004571!5.45e-09!33;UBERON:0000486!6.67e-09!82;UBERON:0000468!3.00e-08!659;UBERON:0004535!4.17e-07!110 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.35e-14;33!UBERON:0004571;1.35e-14;33!UBERON:0001637;2.61e-12;42!UBERON:0003509;2.61e-12;42!UBERON:0004572;2.61e-12;42!UBERON:0000947;1.09e-08;21!UBERON:0010191;1.09e-08;21!UBERON:0003834;3.44e-08;5!UBERON:0001533;3.44e-08;5!UBERON:0007500;5.20e-08;56!UBERON:0001981;5.20e-08;56!UBERON:0004537;5.20e-08;56!UBERON:0004237;9.62e-08;10!UBERON:0004695;9.62e-08;10!UBERON:0002111;9.62e-08;10!UBERON:0004178;9.62e-08;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,2.77e-18,42;UBERON:0003509,2.77e-18,42;UBERON:0004572,2.77e-18,42;UBERON:0004573,5.67e-16,33;UBERON:0004571,5.67e-16,33;UBERON:0007500,4.30e-14,59;UBERON:0001981,4.30e-14,59;UBERON:0004537,4.30e-14,59;UBERON:0006965,4.30e-14,59;UBERON:0000055,4.62e-14,68;UBERON:0002049,1.74e-12,78;UBERON:0007798,1.74e-12,78;UBERON:0004872,2.73e-11,83;UBERON:0003914,6.99e-10,117;UBERON:0001134,1.90e-09,62;UBERON:0002036,1.90e-09,62;UBERON:0003082,1.90e-09,62;UBERON:0007524,3.88e-09,73;UBERON:0000947,4.26e-09,21;UBERON:0010191,4.26e-09,21;UBERON:0002385,5.39e-09,64;UBERON:0001015,5.39e-09,64;UBERON:0000383,5.39e-09,64;UBERON:0002329,1.49e-08,71;UBERON:0003059,1.49e-08,71;UBERON:0007282,1.49e-08,71;UBERON:0004290,1.49e-08,71;UBERON:0009618,1.49e-08,71;UBERON:0003077,2.31e-08,72;UBERON:0007285,2.31e-08,72;UBERON:0007503,3.13e-08,78;UBERON:0004237,3.49e-08,10;UBERON:0004695,3.49e-08,10;UBERON:0002111,3.49e-08,10;UBERON:0004178,3.49e-08,10;UBERON:0003834,6.67e-08,5;UBERON:0001533,6.67e-08,5;UBERON:0004535,7.89e-08,109;UBERON:0001009,1.90e-07,112;UBERON:0000486,2.22e-07,83;UBERON:0003104,3.33e-07,160;UBERON:0009142,3.33e-07,160 | |||
|phase1_expression=0.363356758541113,1.71280419112787,0.563817616383885,1.0007329835313,0,0,0,1.89515962028049,0.261185628199839,0.491467873003018,0.697801167972428,1.52908960491121,1.58260186937072,0.123766352960047,0.662794751455832,0.672325146451775,1.80808358407193,1.46062018077475,1.95173119516203,0.246242116153576,0.408001382488506,0,0,0.547497700291537,0,0,0,0,0,0,0,0,0,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0.289693037921647,0.795285947051099,0.486634870302636,0.0945348171640679,0.443458794925128,0.351339142772504,0.0654895377488563,0.728590576585084,0,0,0,0,0,0,0,0,0,0.347140501607594,0,0.419499436209906,0.275118041940067,0.208994966536811,0.516833518338658,0.71153252537342,0,0,1.52054421143703,0.732186172644509,1.83831540172934,0,0.0892997282840798,0,0.112611480483322,0,0,0.732806975721629,0,0,0.436094052142534,0.496971951695318,1.2663051166458,1.32409180813219,1.72101972449288,0.709336764396714,0.560677600142307,0,0.98667019366864,0,0,0.163461903113459,0.302714855289863,0,0,0.936480230490962,0.570471821544449,1.34503812496621,0.23486899728753,0,0.140450806702248,0.204154171254893,0.245668634623536,0.103325781175765,0,0.247266929278557,3.64064544775211,1.43723628363248,0,0,1.38532057742091,0.877955241761676,0.612975591598039,0.300476117813194,0.226864366320042,0.717558542755448,0,0.423863802319124,0.600182192168805,0.309157587715317,0.772921620136887,0.18611685633159,0.506328996723799,0.584622030967192,0.252433774244115,0.460249493211497,0.484938170456436,0.355009592516614,0.302256294682921,0.169560592310488,0,0,0.860413786167011,0.487894824518382,0,0.464775771478074,0.310983165046111,0.252320850875628,0.72995471815166,0,0.643240938192885,0,1.39310378409594,1.44375896333917,0,0,0,0.110293972732394,0,0.237270619111097,0,0.196221465125346,0,0,0,1.2347220339942,0,0,0,0.590789906681404,0,0.368965315629341,1.20097467208968,0.768251997860379,0,0.201057944823262,0.370353780634118,0,0,1.44331342025273,0.231860809950154,0.469634776943287,0.866198686566443,0.925971025153221,0.570762456703795,0,0,0.246217006087397,0.234004265139238,0.148631162288728,0.93733833986777,0.335964256397719,1.13420077793909,0.0895585227028483,0,0.383382679165211,0,0,0,0.144119953416961,0,0.63497894292169,2.67391897890794,1.17217447210047,3.4214489204541,1.33675740514321,2.10240140490742,2.00078502841405,0.336393253036082,0.43596006883328,0.80672114403045,0.387815147273333,0,0,1.86156681609409,1.04007436911366,0.514414748524284,1.41849132023278,0,0.285955987316295,0.542621605391443,0,0.977208552881205,0.355391948742546,0,0,0.871533458600294,0.499864955910285,0,0.502257091432126,0,0.479249710983165,0,0,1.73737568001095,0.410952645100767,0.537182889719687,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0.623912584592421,0.356857977594324,0.157702415033935,0.117141414992713,0.601892199455438,2.27407504055985,0,1.99267679560631,0.368738337083406,1.21637060255316,0.195801157462741,0.343143423810856,0,0,0,0.303127571446259,1.66435439510497,0,0.992431231275107,1.84154367945675,0.280660094433074,0.512556597022804,1.02341449813341,0.64341568457443,0,0.462629081407967,0.355123450626254,0.492762936082855,0.519254429183621,0.697262270759755,0.483437798366489,0.802025881213139,0.276242966807689,0.229628896329213,0.546273504020151,0.655622074797121,1.80479845162965,1.07821471946181,0,0,0.633309773357254,0,0.850468526382578,0.863663664408557,1.54227252690289,0.541892875087706,0.501689773854853,0.254876273045038,0.831076008928724,0.223874754722178,0,0,0.769350375349168,1.96808787419823,0.650756789328606,0.103041011647722,0,0,0,0,1.6068392984416,0.48335359146061,0.154048617114644,0,0.137836572484531,0,0.145016693914229,0.340906509664404,0.445160178233687,0.330569830721956,0.192190067365106,0.127612712494584,0.2023155617111,3.253918845081,2.51849877464512,0,0.308033580176089,0.532306030317022,1.73986598415015,1.8532421910392,0.715624433709956,0.372158369359667,0.632758849437452,0.38126038784765,1.02359116524534,0.42793898803392,0.636406495851874,0,0.359744915166629,0.274537029736055,0.235624804691373,0.606547444719948,1.58510321173008,1.26377536871694,0,0.974853958525138,2.11300293513511,0.136499911407986,0.282810863907425,1.13008116620243,1.10273068709225,3.3171948762061,2.19225442626881,2.31510213706675,0.655894752046633,1.01455188481352,0.30982349809975,1.69017361519345,0.860468113224309,0.491245205065606,1.78335525740625,0.354761064070598,0,0,0,0,0,0,0,0.282431402330337,1.29151611801369,0,0,0.918893600827838,0,0,0,0,0,0,0,0,0.106824071127473,3.84991942105343,0.490080431962063,0.929015875628594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,0,0,0,0,0,0.71623345421307,0.296964680832639,0.307160702099232,0,0,0.111308705022906,0,0.422250816255987,0,0,0,0.20453736500431,0,1.55519793830904,0.359473404589307,0.895105873378046,0,0,0,0,0,0,0,0.52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| |||
|short_description=p10@CCND1 | |||
}} |
Revision as of 09:07, 11 January 2014
Short description: | p10@CCND1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_CCND1_5end |
Coexpression cluster: | C1350_neuroectodermal_neuroblastoma_Melanocyte_Smooth_leiomyoma_hepatoma_mesenchymal |
Association with transcript: | -379bp_to_AB075505_5end |
EntrezGene: | CCND1 |
HGNC: | 1582 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 1.99e-16 | 32 |
smooth muscle cell | 3.52e-14 | 43 |
smooth muscle myoblast | 3.52e-14 | 43 |
muscle precursor cell | 1.89e-10 | 58 |
myoblast | 1.89e-10 | 58 |
multi-potent skeletal muscle stem cell | 1.89e-10 | 58 |
muscle cell | 5.37e-10 | 55 |
pigment cell | 2.14e-09 | 14 |
electrically responsive cell | 1.51e-08 | 61 |
electrically active cell | 1.51e-08 | 61 |
aortic smooth muscle cell | 3.49e-08 | 10 |
melanocyte | 5.47e-08 | 10 |
melanoblast | 5.47e-08 | 10 |
smooth muscle cell of the subclavian artery | 6.67e-08 | 5 |
light melanocyte | 7.55e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 1.41e-08 | 3 |
leiomyoma | 1.41e-08 | 3 |