FFCP PHASE1:Hg19::chr12:66357317..66357328,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8091 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=5009 | |||
|TSSclassifier=weak | |||
|UniProt= | |||
|association_with_transcript=-198bp_to_AK311443_5end | |||
|description=CAGE_peak_19_at_HMGA2_5end | |||
|id=chr12:66357317..66357328,+ | |||
|ontology_enrichment_celltype=CL:0000548!2.99e-10!679;CL:0000004!2.99e-10!679;CL:0000255!2.99e-10!679;CL:0000012!5.88e-10!682;CL:0000055!3.54e-09!180;CL:0002371!1.50e-07!591;CL:0000057!2.41e-07!75;CL:0002540!3.04e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0002573;2.64e-10;2!CL:0002336;3.69e-08;1!CL:0002261;3.69e-08;1!CL:0002170;3.69e-08;1!CL:0002539;8.88e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0002573,2.15e-10,2;CL:0002336,5.43e-08,1;CL:0002261,5.43e-08,1;CL:0002170,5.43e-08,1;CL:0002539,9.44e-07,10 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060085;3.69e-08;1!DOID:3165;3.69e-08;1!DOID:0060121;3.69e-08;1!DOID:2438;3.69e-08;1!DOID:4418;3.69e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060085,2.17e-08,1;DOID:3165,2.17e-08,1;DOID:0060121,2.17e-08,1;DOID:2438,2.17e-08,1;DOID:4418,2.17e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0003102!3.04e-08!95;UBERON:0005256!1.83e-07!143 | |||
|ontology_enrichment_uberon_v019=UBERON:0004237;8.88e-07;10!UBERON:0004695;8.88e-07;10!UBERON:0002111;8.88e-07;10!UBERON:0004178;8.88e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004237,9.44e-07,10;UBERON:0004695,9.44e-07,10;UBERON:0002111,9.44e-07,10;UBERON:0004178,9.44e-07,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0.263766978228454,0.247532705920093,0.331397375727916,1.34465029290355,1.20538905604795,0.730310090387373,2.43966399395253,0,0.204000691244253,0,0,0,0.251085279189606,0.0764134057479513,0.0821005894499457,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,1.10864698731282,0.263504357079378,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.825354125820202,0,0.258416759169329,0,0,0,0,0.24406205754817,0.367663080345869,0,0.0892997282840798,0,0.112611480483322,0,0,0.366403487860815,0,0,0,0.496971951695318,0.12663051166458,0.132409180813219,0.286836620748814,0,0,0,0.49333509683432,0,0.269421344139376,0.490385709340376,0,0.576175924479999,0.234321431833797,0.312160076830321,0,1.19558944441441,0.117434498643765,0.485618833104395,0.561803226808994,0,0.491337269247072,0,0,0,0,0,0.673344455816265,0.500474079487857,0.277064115484183,0,0.30648779579902,0.45071417671979,0,0.179389635688862,0,0.211931901159562,0,0.103052529238439,0,0,0.168776332241266,0,0.252433774244115,0.276149695926898,0,0,0,0.508681776931463,0.57978255948989,1.90922284413584,0.573609190778008,0.243947412259191,0,0.116193942869518,0.310983165046111,1.00928340350251,0.36497735907583,0,0,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.491953754172454,0.514703430895577,0.548751427043128,0,0.100528972411631,1.11106134190236,0.651616610620649,0,0,0.115930404975077,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0,0.179117045405697,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224262168690721,0,0.7333828582095,0.258543431515556,0,0.845302752556,0.26593811658487,0,0.771622122786426,1.41849132023278,1.0656887160644,0.142977993658148,0,0,0,0,0.791951872933429,0,0,0,0,0,0,0,0,0,0.434343920002738,1.2328579353023,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0.542530047399471,0,0,0,0.117141414992713,0,0,0,0,0,0.521301686808497,0,0,0,0,0,0,0,0.30239029332968,0,0,0,0,0.511707249066704,0,0,1.3878872442239,0.355123450626254,0.328508624055237,2.07701771673448,0.232420756919918,0.362578348774867,0.40101294060657,0.460404944679482,0.114814448164607,0.546273504020151,0,0,1.00119938235739,0,2.92278449306521,0.527758144464379,0,0.340187410553031,0,0,0,0,0,0,0.671624264166535,0,0,0,0,0,0,0,0,0,1.95018073810956,0,0,0.154048617114644,0,0.137836572484531,0.107420244868274,0,0.170453254832202,0,0.495854746082934,0.192190067365106,0,0.2023155617111,0.929691098594572,0.31481234683064,0,0,0,0,0.18532421910392,0.143124886741991,0,0.316379424718726,0,0,0.42793898803392,0,0,0.359744915166629,0.54907405947211,0.235624804691373,0,4.75530963519025,0,0,0.487426979262569,0,0.136499911407986,0,0,0,0,0,0,0,0.202910376962704,0,0.281695602532241,0.717056761020258,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0.86101074534246,0,0,0,0,0,0,0,0,0,0,0,2.99107399156925,0,0.490080431962063,0,0,0,0,0,0,0.423347165447766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.99921590399346,0,0,0,0.36408156524854,0,0,0,0,0,0,0,0.333926115068718,0,0.211125408127993,0,0,0,0,0,0.311039587661807,0.179736702294654,0,0,0,0,0,0,0,0,0,0,0,0.682760689712998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.06395354867265,0.489698424477443,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207376382794494,0,0.661983911750998,0.313932918407225,0,3.41531455235751,0.138674673013139,0.347119476670262,0,0,0,0,0,0,0,0,0.706049013532002,0,0.411125773940253,1.78843150532691,0,0,0.160317640503067,0,0,0.288180834308212,0.114536596165916,0,0.288109595976299,0.49701014226173,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16495949527454,0.709048640765013,0.988990300573997,0.876246070104404,0.0984274815147488,0,0,0,0.321506296930038,0.275078873194468,1.24632101408756,0,0,0,0,0,0,0.422401346077626,0,0,0,0,0,0,0,0.326587360109409,0,0,0,0.113312091520126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.74988244777264,0.303298235083296,0.570930667089935,0.235265819698172,0,0,0.149254802886874,0,0,0.568209015825267,0.50313580350515,0.889811221596536,0,0.151230923763239,0.15543720058278,0.147855149989634,0.318593534327405,0.449803112163605,0,0.414706207840855,0.53168342911599,1.5652351854352,0.150257608997218,0,0,0.545545977607678,0.107410557042488,0.464033759878494,0.398095888698616,0.400027764663154,0.343395705182793,0.336749488765919,0,0,0,0,0,0,0.244736704506468,0,0,0,0,0,0.168942440653073,0,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0,0.567515953566836,0.920529751259204,0,0.622077260032973,0,0,0,0,0,0,0.247871528518004,0,0,0.23658523500376,0,0.705351887381368,0,0,0,0,0,0,0,0,0,0.0981477185010256,0,0.183428598521679,0.231051332300676,0,0,0,0,0.20170506870352,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0.255524855279191,0,0,0,0,0,0,0.342976018874837,0,0,0,0.333694205676207,0,0,0.280272163313789,0,0.215927591218621,0.47775168788705,0,3.16027223465453,1.62737995515375,0.869291361512897,0,0,0,0,0,1.5383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| |||
|short_description=p19@HMGA2 | |||
}} |
Revision as of 14:27, 11 January 2014
Short description: | p19@HMGA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_19_at_HMGA2_5end |
Coexpression cluster: | NA |
Association with transcript: | -198bp_to_AK311443_5end |
EntrezGene: | HMGA2 |
HGNC: | 5009 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Schwann cell | 2.15e-10 | 2 |
buccal mucosa cell | 5.43e-08 | 1 |
endothelial cell of viscerocranial mucosa | 5.43e-08 | 1 |
keratinized cell of the oral mucosa | 5.43e-08 | 1 |
aortic smooth muscle cell | 9.44e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
blood vessel smooth muscle | 9.44e-07 | 10 |
arterial system smooth muscle | 9.44e-07 | 10 |
artery smooth muscle tissue | 9.44e-07 | 10 |
aorta smooth muscle tissue | 9.44e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
organ system benign neoplasm | 2.17e-08 | 1 |
skin benign neoplasm | 2.17e-08 | 1 |
integumentary system benign neoplasm | 2.17e-08 | 1 |
dermis tumor | 2.17e-08 | 1 |
cutaneous fibrous histiocytoma | 2.17e-08 | 1 |