FFCP PHASE1:Hg19::chr16:447183..447207,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4833 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7852 | |||
|TSSclassifier=strong | |||
|UniProt=F2Z2X0,F2Z297,O00746 | |||
|association_with_transcript=0bp_to_ENST00000444498,ENST00000448828,ENST00000460297,NM_005009,uc002cgz.2,uc002cha.2_5end | |||
|description=CAGE_peak_1_at_NME4_5end | |||
|id=chr16:447183..447207,+ | |||
|ontology_enrichment_celltype=CL:0002321!2.19e-26!248;CL:0000220!1.99e-25!246;CL:0000055!7.16e-16!180;CL:0000144!7.75e-16!625;CL:0000012!2.40e-15!682;CL:0000222!2.49e-15!119;CL:0000548!3.43e-15!679;CL:0000004!3.43e-15!679;CL:0000255!3.43e-15!679;CL:0002371!4.01e-13!591;CL:0000183!2.13e-12!59;CL:0000393!2.32e-12!60;CL:0000211!2.32e-12!60;CL:0000187!3.14e-11!54;CL:0000221!3.83e-11!71;CL:0000680!7.51e-11!57;CL:0000056!7.51e-11!57;CL:0000355!7.51e-11!57;CL:0000192!2.47e-10!42;CL:0000514!2.47e-10!42;CL:0000066!2.29e-09!254;CL:0000325!6.36e-09!39;CL:0002077!3.58e-08!33;CL:0000133!9.27e-08!59;CL:0000359!1.27e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0002077;8.38e-08;34!CL:0000192;1.51e-07;43!CL:0000359;4.41e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.32e-26,250;CL:0000222,1.85e-15,121;CL:0000393,2.13e-12,61;CL:0000211,2.13e-12,61;CL:0000221,1.67e-11,72;CL:0000187,2.88e-11,55;CL:0000680,6.81e-11,58;CL:0000056,6.81e-11,58;CL:0000355,6.81e-11,58;CL:0000192,2.36e-10,43;CL:0000514,2.36e-10,43;CL:0000066,2.66e-09,253;CL:0002077,1.46e-08,34;CL:0000133,9.27e-08,59;CL:0000359,1.27e-07,32 | |||
|ontology_enrichment_development_v019=CL:0000514;1.51e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!1.02e-14!143;UBERON:0002100!2.00e-13!216;UBERON:0000490!3.22e-13!138;UBERON:0003914!1.87e-12!118;UBERON:0002049!7.45e-12!79;UBERON:0007798!7.45e-12!79;UBERON:0003104!3.23e-11!238;UBERON:0009142!3.23e-11!238;UBERON:0000486!4.36e-11!82;UBERON:0000914!3.95e-10!83;UBERON:0002329!3.95e-10!83;UBERON:0003077!3.95e-10!83;UBERON:0003059!3.95e-10!83;UBERON:0007282!3.95e-10!83;UBERON:0009618!3.95e-10!83;UBERON:0007285!3.95e-10!83;UBERON:0000055!1.10e-09!69;UBERON:0004290!1.21e-09!70;UBERON:0001134!1.66e-09!61;UBERON:0002036!1.66e-09!61;UBERON:0003082!1.66e-09!61;UBERON:0002385!2.35e-09!63;UBERON:0001015!2.35e-09!63;UBERON:0000383!2.35e-09!63;UBERON:0001981!2.68e-09!60;UBERON:0007500!2.68e-09!60;UBERON:0004537!2.68e-09!60;UBERON:0006965!2.68e-09!60;UBERON:0000483!4.25e-09!309;UBERON:0000119!4.78e-09!312;UBERON:0004872!1.09e-08!84;UBERON:0009569!3.03e-07!113;UBERON:0001637!7.60e-07!42;UBERON:0003509!7.60e-07!42;UBERON:0004572!7.60e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0003914;4.31e-07;74 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,2.10e-15,160;UBERON:0009142,2.10e-15,160;UBERON:0000490,1.11e-13,148;UBERON:0002100,6.12e-13,199;UBERON:0005256,7.01e-13,122;UBERON:0003914,2.24e-12,117;UBERON:0002049,1.04e-11,78;UBERON:0007798,1.04e-11,78;UBERON:0007503,1.42e-11,78;UBERON:0000486,3.78e-11,83;UBERON:0002329,1.05e-09,71;UBERON:0003059,1.05e-09,71;UBERON:0007282,1.05e-09,71;UBERON:0004290,1.05e-09,71;UBERON:0009618,1.05e-09,71;UBERON:0001134,1.47e-09,62;UBERON:0002036,1.47e-09,62;UBERON:0003082,1.47e-09,62;UBERON:0000055,1.53e-09,68;UBERON:0007524,1.67e-09,73;UBERON:0002385,2.07e-09,64;UBERON:0001015,2.07e-09,64;UBERON:0000383,2.07e-09,64;UBERON:0003077,2.91e-09,72;UBERON:0007285,2.91e-09,72;UBERON:0007500,3.71e-09,59;UBERON:0001981,3.71e-09,59;UBERON:0004537,3.71e-09,59;UBERON:0006965,3.71e-09,59;UBERON:0000483,7.98e-09,306;UBERON:0000119,8.97e-09,309;UBERON:0004872,1.50e-08,83;UBERON:0009569,5.51e-07,112;UBERON:0001637,7.60e-07,42;UBERON:0003509,7.60e-07,42;UBERON:0004572,7.60e-07,42;UBERON:0005177,8.95e-07,101 | |||
|phase1_expression=44.6928813005569,65.5147603106408,40.8767771878316,28.0205235388765,35.756887554183,35.7658794881151,141.847931774254,56.8547886084148,86.9748141905462,80.1092632994919,125.604210235037,39.319446983431,126.344382571429,88.1216433075532,53.3549774921944,71.2664655238882,80.7610667552129,97.1312420215206,109.784879727864,53.8039023795563,57.7321956221236,129.45679997045,54.0986015677697,80.6190363679288,81.9793436554062,10.6214633989652,8.94896425004409,7.08397031823113,7.86728553697808,6.1412703695554,14.243083345079,54.2458522442567,107.229307085057,63.9674437588543,5.73257284294232,39.2387081665283,108.338562114559,23.8218025668707,9.82667792603694,5.4252717678963,7.83704159839735,9.39291631455041,10.8181738406358,2.90796477559129,4.91238726795452,10.4311146310761,1.39457422143411,8.63452564845834,6.81354015969228,3.74000110018796,11.5272317938095,6.85798466676897,1.37898272294647,5.16387746867061,9.47985406160392,3.38836211176688,7.09555990150399,5.8428105955722,2.14258724659632,5.1348644332175,7.03270838378945,0.989553900560148,10.5715738539465,10.2293940127847,3.77272010217159,8.5107783703671,4.9825779919646,2.51248665256743,10.9511412868242,10.2078757011405,6.05399502633369,8.47038562771399,6.64571013625857,4.01385043992689,4.889898899196,4.19317291016752,5.39177429503177,3.00353785683013,3.37523732063868,3.13514018115373,0.99458338599545,1.0959849225878,14.0796995569058,13.6534652815533,14.2321480618169,9.38806489646316,16.8166314555125,9.19603903927173,14.542987201267,19.0810750907073,13.0918982895173,5.28513470433845,10.7036503875064,34.3645454305467,24.101868208206,93.2379660103773,7.86839080455332,16.1134412727158,6.37364646898479,1.33749196312542,13.3628129319772,11.8361951433683,7.79306913631645,1.55974639639243,0.294605907474837,1.10766947291811,0.541607727530031,1.66518715643378,1.1705341280389,1.80881695064044,2.48715016007264,1.73881851441031,13.4940772477475,12.3068780921268,15.6803285707465,2.03956816855619,6.89796888483458,6.52892146416997,3.79529538029254,14.6540090589084,14.3238359848412,18.0585888445191,8.88393202558859,6.2713439465665,8.74515085866421,13.969857870597,9.85353596305256,9.27391018833769,12.5696892018248,9.99288386791313,26.8187552945358,84.5083083226582,82.8549400746077,27.8308147336116,41.1097086721429,76.4789620113149,23.0632924644819,75.4284048969086,49.8198486454638,82.4833358560738,68.2476284835589,24.4930871180723,161.018517425304,136.819459387454,10.0609692032952,12.8856005601458,13.4287540124054,25.0415155520609,43.4716132192897,18.5728750664782,50.4856514711431,80.0018173448696,72.2052243343796,70.6634927405012,115.781844393934,131.231306005412,73.5662282209573,56.593270258083,64.0379272836078,46.1914445615245,50.7564939557525,85.1504758404734,125.936021694855,36.7663080345869,121.521292182264,76.7084665960245,91.8325134041035,101.800778356923,101.188980727483,83.5353780419953,117.432317859391,1.31780417436063,3.87780264148325,115.128829765629,67.5881854305633,66.4810186239044,16.4187384208391,5.16305917347865,70.579008057473,72.8880880184999,90.7366463702492,184.507326216036,56.3291974073577,41.7603083416033,40.7020138752512,40.8665054641315,87.0025645964798,112.005644416555,116.74786873454,69.5975622284228,118.66225235813,57.3080353381573,38.3638878152472,47.7532742787645,43.0765301347825,90.1603889068377,64.2686358913261,64.1521542932309,66.7620709052104,55.5198430782196,191.152425723119,62.2843621630045,97.2170899405162,31.3082450497127,59.700956439794,80.2998024993431,68.2080787435949,78.3816385635745,7.17558542755448,53.3893472046419,51.0755881794544,9.30282397861647,40.4996439907065,6.95629458123199,71.2827559749989,12.8270012503362,44.4312743535066,9.34004964703224,69.497673474936,40.8964523751594,6.39017266529906,49.8722886226819,53.4115865778036,43.2904311085785,54.0037318769853,50.7644133838537,125.754891019613,182.493490978685,129.788634185252,82.0995555721734,89.8262229117237,178.108951229005,28.1609158193669,47.5998294262735,60.7793653950914,85.9080666859161,112.613199140455,19.9938492067336,17.8699771482788,21.6909926895134,16.9852718007887,17.2124760833001,20.4052732435543,22.9213223872279,18.4448177217825,23.0848294167834,55.3616590968486,196.338483324824,81.4916542436172,158.769408296385,58.3073160180422,47.175706400526,31.3118650541144,35.7585110525867,52.5160632579095,97.622084059861,147.833634445419,89.9214026060956,109.576579928678,109.624719067699,71.6778271682714,113.352891595474,105.361879678449,122.306577248706,74.3197034512751,65.1092679402443,90.2821749524391,59.3592954971947,53.7338990612307,43.7827942668385,18.9587094687296,14.2742601734935,45.1838733357734,48.741593673124,58.7937448696008,76.2750023164039,46.4808732827783,34.8760726216754,72.8427090413901,11.8239177095026,25.4459974298223,30.6845611000343,37.47118788841,34.0854570251226,76.5149626220637,131.022029966489,70.3304683260282,133.43650789771,120.719476433702,108.12350082381,129.479373981652,37.5639132556958,32.2610450936627,70.0380629590073,46.79636110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| |||
|short_description=p1@NME4 | |||
}} |
Revision as of 01:38, 12 January 2014
Short description: | p1@NME4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NME4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000444498, ENST00000448828, ENST00000460297, NM_005009, uc002cgz.2, uc002cha.2_5end |
EntrezGene: | NME4 |
HGNC: | 7852 |
UniProt: | F2Z2X0F2Z297O00746 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.32e-26 | 250 |
mesodermal cell | 1.85e-15 | 121 |
electrically responsive cell | 2.13e-12 | 61 |
electrically active cell | 2.13e-12 | 61 |
ectodermal cell | 1.67e-11 | 72 |
muscle cell | 2.88e-11 | 55 |
muscle precursor cell | 6.81e-11 | 58 |
myoblast | 6.81e-11 | 58 |
multi-potent skeletal muscle stem cell | 6.81e-11 | 58 |
smooth muscle cell | 2.36e-10 | 43 |
smooth muscle myoblast | 2.36e-10 | 43 |
epithelial cell | 2.66e-09 | 253 |
ecto-epithelial cell | 1.46e-08 | 34 |
neurectodermal cell | 9.27e-08 | 59 |
vascular associated smooth muscle cell | 1.27e-07 | 32 |