FFCP PHASE1:Hg19::chr19:42947059..42947081,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=284340 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19232 | |||
|TSSclassifier=strong | |||
|UniProt=Q6UXB2 | |||
|association_with_transcript=54bp_to_ENST00000341918,NM_198477,uc002otu.2_5end | |||
|coexpression_cluster_id=C81 | |||
|description=CAGE_peak_2_at_CXCL17_5end | |||
|id=chr19:42947059..42947081,- | |||
|ontology_enrichment_celltype=CL:0002076!4.67e-26!43;CL:0002368!6.22e-22!13;CL:0000223!8.81e-22!59;CL:0002202!6.92e-14!9;CL:0002632!6.92e-14!9;CL:0000068!2.85e-07!3;CL:0000069!2.85e-07!3;CL:0000307!2.85e-07!3;CL:0000377!2.85e-07!3;CL:0002328!3.16e-07!3;CL:0002231!4.71e-07!3;CL:0000066!6.15e-07!254 | |||
|ontology_enrichment_celltype_v019=CL:0002368;3.50e-27;13!CL:0002202;4.07e-14;9!CL:0002632;4.07e-14;9!CL:0002076;5.81e-13;42!CL:0000307;1.23e-11;3!CL:0002328;1.43e-11;3!CL:0000244;4.07e-09;4!CL:0000731;4.07e-09;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002368,4.47e-27,13;CL:0002076,1.30e-16,42;CL:0000223,1.65e-14,58;CL:0002202,4.93e-14,9;CL:0002632,4.93e-14,9;CL:0000068,1.40e-11,3;CL:0000069,1.40e-11,3;CL:0000307,1.40e-11,3;CL:0000377,1.40e-11,3;CL:0002328,1.69e-11,3;CL:0000244,4.37e-09,4;CL:0000731,4.37e-09,4 | |||
|ontology_enrichment_development_v019=CL:0000377;1.23e-11;3!CL:0000223;5.84e-09;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!1.14e-26!169;UBERON:0000925!1.14e-26!169;UBERON:0006595!1.14e-26!169;UBERON:0001007!4.02e-21!155;UBERON:0001555!4.02e-21!155;UBERON:0007026!4.02e-21!155;UBERON:0004921!1.74e-20!129;UBERON:0004185!1.74e-20!129;UBERON:0000077!4.88e-17!130;UBERON:0001004!9.77e-16!72;UBERON:0001041!1.61e-14!98;UBERON:0007196!1.06e-13!14;UBERON:0001558!1.06e-13!14;UBERON:0005911!2.57e-13!82;UBERON:0000466!3.08e-13!126;UBERON:0000065!6.19e-13!53;UBERON:0005178!1.09e-12!34;UBERON:0002224!1.09e-12!34;UBERON:0000161!1.67e-12!35;UBERON:0005181!3.35e-12!35;UBERON:0000464!1.16e-11!104;UBERON:0005177!4.07e-10!107;UBERON:0000481!2.73e-08!347;UBERON:0003126!3.75e-08!7;UBERON:0001005!3.75e-08!7;UBERON:0003104!5.62e-08!238;UBERON:0009142!5.62e-08!238;UBERON:0007023!5.77e-08!115;UBERON:0008947!5.90e-08!38;UBERON:0003258!5.90e-08!38;UBERON:0000166!7.63e-08!21;UBERON:0000922!1.08e-07!612;UBERON:0004815!3.16e-07!3;UBERON:0002031!3.16e-07!3;UBERON:0000365!4.70e-07!5;UBERON:0000915!7.14e-07!52 | |||
|ontology_enrichment_uberon_v019=UBERON:0007196;6.64e-15;15!UBERON:0001558;6.64e-15;15!UBERON:0005178;8.21e-15;34!UBERON:0002224;8.21e-15;34!UBERON:0003126;1.07e-13;7!UBERON:0001005;1.07e-13;7!UBERON:0005181;1.98e-13;35!UBERON:0000065;2.89e-12;44!UBERON:0004815;1.43e-11;3!UBERON:0002031;1.43e-11;3!UBERON:0003127;2.09e-09;2!UBERON:0000341;6.33e-09;2!UBERON:0000485;8.94e-09;7!UBERON:0006562;1.66e-08;2!UBERON:0000365;2.26e-07;5!UBERON:0002185;4.07e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.04e-20,160;UBERON:0000925,1.04e-20,160;UBERON:0006595,1.04e-20,160;UBERON:0000065,7.39e-19,54;UBERON:0005178,2.13e-16,34;UBERON:0002224,2.13e-16,34;UBERON:0005181,7.63e-16,35;UBERON:0001041,9.28e-16,87;UBERON:0004921,3.44e-15,118;UBERON:0007196,7.74e-15,15;UBERON:0001558,7.74e-15,15;UBERON:0001004,3.97e-14,74;UBERON:0003126,1.18e-13,7;UBERON:0001005,1.18e-13,7;UBERON:0001007,1.61e-13,145;UBERON:0001555,1.61e-13,145;UBERON:0007026,1.61e-13,145;UBERON:0004815,1.69e-11,3;UBERON:0002031,1.69e-11,3;UBERON:0005177,4.15e-10,101;UBERON:0008947,4.78e-10,38;UBERON:0003258,4.78e-10,38;UBERON:0000915,1.04e-09,52;UBERON:0003127,2.09e-09,2;UBERON:0000341,6.59e-09,2;UBERON:0005911,3.58e-08,82;UBERON:0000072,1.71e-07,47;UBERON:0000365,2.39e-07,5;UBERON:0002185,4.49e-07,5;UBERON:0000485,8.38e-07,9;UBERON:0009569,8.88e-07,112 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,2.79120467188971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.75826367343678,3.0120591877825,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,3.73290365168481,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.79703457356788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0.545492241181669,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.4965432564323,0,0,0,0,1.01847289674383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,1.71072446022705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.846016147141356,0.601519410909855,11.510123616987,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.3345112812494,0,0,0,0,0,0,0,0,0,0,0,0,0,9.42124017557575,11.3392139745413,9.44334072459923,13.4539848537881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53955380360819,5.3624182042863,2.17781969722645,11.5796874955438,0,3.36942951335251,6.65145230305014,2.29723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.77067154179172,0,0.251932747854276,0,0,0,0,2.86433879480975,0,0.493217028184668,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,6.30992119731136,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.565412285735763,0,0,0,0,0,0,0,0.202203398942031,0,0,0,1.76098157038881,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0.284609546029793,0,0,1.17590876897253,0,2.09672001890436,0,0,0,0,30.8425072433174,0,14.010805928393,0,0,0,0,15.3904934882945,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0.798716001995964,0,0,0,0,2.32991899054908,0.0787831823072236,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,1.32506888912221,0,0,0,0,75.9258503356309,58.1655928868764,38.5242321472892,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.310482014706917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.839277046316667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.917142992608395,0,0,0,0,0.376051641746286,0,1.56302802246618,0,0,2.95712172434091,0,0,0,0,0,1.64477330057155,2.97726707033577,0,1.78867398695433,0,0,0,0.455324382702595,0,0,0,0,0,0,0,0.863424021355654,0,0,0,0,0,0.0714765441766563,0,0,0,0,0.414432328326074,0,0,0.430227358820278,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,2.4285549652957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128915775947154,0,0,0,0.0802413666891683,43.820183294791,0.458729283404541,0,0,0,0.436350690340377,2.1161073620616,0,0,0,0,0,0,0.407955318967927,0,0,0,0.151557396436479,0,0.829169439458779,0,17.9116544796824,3.09483760902862,0,0,0,0.12729431655633,0,2.61260097476354,3.42233301085281,14.7500996101947,112.962473493465,31.9353942284173,0.0814032686109745,0,0,0,2.34640942403454,0.366724332548599,1.22068853494722,0.665756774185513,0,0 | |||
|short_description=p2@CXCL17 | |||
}} |
Revision as of 23:38, 20 January 2014
Short description: | p2@CXCL17 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CXCL17_5end |
Coexpression cluster: | C81_trachea_salivary_throat_aorta_eye_submaxillary_parotid |
Association with transcript: | 54bp_to_ENST00000341918, NM_198477, uc002otu.2_5end |
EntrezGene: | CXCL17 |
HGNC: | 19232 |
UniProt: | Q6UXB2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory epithelial cell | 4.47e-27 | 13 |
endo-epithelial cell | 1.30e-16 | 42 |
endodermal cell | 1.65e-14 | 58 |
epithelial cell of tracheobronchial tree | 4.93e-14 | 9 |
epithelial cell of lower respiratory tract | 4.93e-14 | 9 |
duct epithelial cell | 1.40e-11 | 3 |
branched duct epithelial cell | 1.40e-11 | 3 |
tracheal epithelial cell | 1.40e-11 | 3 |
tracheoblast | 1.40e-11 | 3 |
bronchial epithelial cell | 1.69e-11 | 3 |
transitional epithelial cell | 4.37e-09 | 4 |
urothelial cell | 4.37e-09 | 4 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.04e-20 | 160 |
endoderm | 1.04e-20 | 160 |
presumptive endoderm | 1.04e-20 | 160 |
respiratory tract | 7.39e-19 | 54 |
thoracic cavity element | 2.13e-16 | 34 |
thoracic cavity | 2.13e-16 | 34 |
thoracic segment organ | 7.63e-16 | 35 |
foregut | 9.28e-16 | 87 |
subdivision of digestive tract | 3.44e-15 | 118 |
tracheobronchial tree | 7.74e-15 | 15 |
lower respiratory tract | 7.74e-15 | 15 |
respiratory system | 3.97e-14 | 74 |
trachea | 1.18e-13 | 7 |
respiratory airway | 1.18e-13 | 7 |
digestive system | 1.61e-13 | 145 |
digestive tract | 1.61e-13 | 145 |
primitive gut | 1.61e-13 | 145 |
lower respiratory tract epithelium | 1.69e-11 | 3 |
epithelium of bronchus | 1.69e-11 | 3 |
trunk region element | 4.15e-10 | 101 |
respiratory primordium | 4.78e-10 | 38 |
endoderm of foregut | 4.78e-10 | 38 |
thoracic segment of trunk | 1.04e-09 | 52 |
open tracheal system trachea | 2.09e-09 | 2 |
throat | 6.59e-09 | 2 |
endo-epithelium | 3.58e-08 | 82 |
segment of respiratory tract | 1.71e-07 | 47 |
urothelium | 2.39e-07 | 5 |
bronchus | 4.49e-07 | 5 |
simple columnar epithelium | 8.38e-07 | 9 |
subdivision of trunk | 8.88e-07 | 112 |