FFCP PHASE1:Hg19::chr20:34025999..34026045,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8200 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4220 | |||
|TSSclassifier=strong | |||
|UniProt=P43026 | |||
|association_with_transcript=0bp_to_ENST00000374369,NM_000557,uc002xck.1_5end | |||
|coexpression_cluster_id=C2614 | |||
|description=CAGE_peak_1_at_GDF5_5end | |||
|id=chr20:34025999..34026045,- | |||
|ontology_enrichment_celltype=CL:0000055!6.25e-30!180;CL:0000057!1.80e-20!75;CL:0000183!3.14e-15!59;CL:0000187!2.71e-13!54;CL:0000680!2.93e-13!57;CL:0000056!2.93e-13!57;CL:0000355!2.93e-13!57;CL:0000192!1.04e-10!42;CL:0000514!1.04e-10!42;CL:0000393!1.90e-10!60;CL:0000211!1.90e-10!60;CL:0000222!8.35e-10!119;CL:0002371!1.91e-09!591;CL:0000144!2.08e-09!625;CL:0000048!2.46e-07!430;CL:0000723!3.92e-07!436 | |||
|ontology_enrichment_celltype_v019=CL:0002540;4.82e-09;6!CL:0000499;5.56e-09;28!CL:0002320;2.34e-07;188 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.28e-14,76;CL:0000048,2.02e-11,427;CL:0000723,7.99e-11,433;CL:0000034,4.63e-10,441;CL:0000187,3.40e-09,55;CL:0002540,4.63e-09,6;CL:0000499,5.15e-09,28;CL:0000680,5.25e-09,58;CL:0000056,5.25e-09,58;CL:0000355,5.25e-09,58;CL:0002320,2.15e-08,361;CL:0000393,1.54e-07,61;CL:0000211,1.54e-07,61 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!2.15e-15!365;UBERON:0000914!5.43e-15!83;UBERON:0002329!5.43e-15!83;UBERON:0003077!5.43e-15!83;UBERON:0003059!5.43e-15!83;UBERON:0007282!5.43e-15!83;UBERON:0009618!5.43e-15!83;UBERON:0007285!5.43e-15!83;UBERON:0004290!2.55e-13!70;UBERON:0001134!7.11e-13!61;UBERON:0002036!7.11e-13!61;UBERON:0003082!7.11e-13!61;UBERON:0002385!1.58e-12!63;UBERON:0001015!1.58e-12!63;UBERON:0000383!1.58e-12!63;UBERON:0005256!2.16e-11!143;UBERON:0000486!2.67e-11!82;UBERON:0000481!4.22e-11!347;UBERON:0001444!1.06e-09!48;UBERON:0003102!1.87e-09!95;UBERON:0000119!2.41e-09!312;UBERON:0000483!9.92e-09!309;UBERON:0002200!4.04e-08!11;UBERON:0006876!4.04e-08!11;UBERON:0002100!2.18e-07!216;UBERON:0001456!3.92e-07!21;UBERON:0002049!6.14e-07!79;UBERON:0007798!6.14e-07!79 | |||
|ontology_enrichment_uberon_v019=UBERON:0006876;5.77e-10;11!UBERON:0001801;2.85e-08;14!UBERON:0004905;3.31e-08;8!UBERON:0000982;3.31e-08;8!UBERON:0004770;3.31e-08;8!UBERON:0011135;3.60e-08;5!UBERON:0002216;3.60e-08;5!UBERON:0011134;3.60e-08;5!UBERON:0002209;3.60e-08;5!UBERON:0002213;3.60e-08;5!UBERON:0007844;3.60e-08;5!UBERON:0011138;3.60e-08;5!UBERON:0001130;3.60e-08;5!UBERON:0001066;3.60e-08;5!UBERON:0001468;3.60e-08;5!UBERON:0002203;1.26e-07;6!UBERON:0001768;1.26e-07;6!UBERON:0002200;1.26e-07;6!UBERON:0001044;2.27e-07;6!UBERON:0003293;2.27e-07;6!UBERON:0003294;2.27e-07;6!UBERON:0010047;2.27e-07;6!UBERON:0003408;2.27e-07;6!UBERON:0000167;2.27e-07;6!UBERON:0002384;2.97e-07;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006876,5.03e-10,11;UBERON:0002384,1.23e-08,371;UBERON:0007524,1.36e-08,73;UBERON:0001134,1.46e-08,62;UBERON:0002036,1.46e-08,62;UBERON:0003082,1.46e-08,62;UBERON:0004905,2.46e-08,8;UBERON:0000982,2.46e-08,8;UBERON:0004770,2.46e-08,8;UBERON:0007503,2.57e-08,78;UBERON:0002329,2.73e-08,71;UBERON:0003059,2.73e-08,71;UBERON:0007282,2.73e-08,71;UBERON:0004290,2.73e-08,71;UBERON:0009618,2.73e-08,71;UBERON:0001801,2.78e-08,14;UBERON:0011135,3.62e-08,5;UBERON:0002216,3.62e-08,5;UBERON:0011134,3.62e-08,5;UBERON:0002209,3.62e-08,5;UBERON:0002213,3.62e-08,5;UBERON:0005856,3.62e-08,5;UBERON:0005866,3.62e-08,5;UBERON:0005863,3.62e-08,5;UBERON:0007844,3.62e-08,5;UBERON:0011138,3.62e-08,5;UBERON:0001130,3.62e-08,5;UBERON:0001066,3.62e-08,5;UBERON:0001468,3.62e-08,5;UBERON:0003077,4.68e-08,72;UBERON:0007285,4.68e-08,72;UBERON:0002385,4.82e-08,64;UBERON:0001015,4.82e-08,64;UBERON:0000383,4.82e-08,64;UBERON:0002203,1.29e-07,6;UBERON:0001768,1.29e-07,6;UBERON:0002200,1.29e-07,6;UBERON:0001044,2.30e-07,6;UBERON:0003293,2.30e-07,6;UBERON:0003294,2.30e-07,6;UBERON:0010047,2.30e-07,6;UBERON:0000167,2.30e-07,6;UBERON:0001444,2.81e-07,49;UBERON:0000486,4.24e-07,83;UBERON:0003104,4.96e-07,160;UBERON:0009142,4.96e-07,160 | |||
|phase1_expression=1.45342703416445,1.07050261945492,0.422863212287913,1.0007329835313,0.446961094427288,3.48935409640147,0,3.15859936713415,0.261185628199839,1.47440361900905,0.697801167972428,0,0,47.773812242578,36.4537113300707,0.672325146451775,0.602694528023977,1.46062018077475,1.95173119516203,4.80172126499473,12.4440421658994,4.07491137921514,0.572471974262113,2.46373965131192,1.38096903554283,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0,1.15076305659177,18.0719576192283,21.0561922467074,15.0640379719257,3.1811437882044,10.705967146658,2.74150969775797,6.20842312895179,4.30390449896318,0.0654895377488563,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0.33472061276467,0,0,0,0,0.81014194788176,0.0892997282840798,0,0.112611480483322,0,0,0.183201743930407,0,0,0.436094052142534,1.49091585508596,6.83804762988731,7.0176865831006,5.73673241497627,1.77334191099179,7.8494864019923,0,2.4666754841716,4.97937656639626,0.538842688278752,0.653847612453835,2.4217188423189,0.576175924479999,2.10889288650417,0.624320153660641,0,1.04614076386261,0.587172493218824,0,0.702254033511242,1.42907919878425,0.737005903870608,2.16984140469107,2.37600571456411,0.989067717114227,5.46096817162816,19.4026898290384,0.168336113954066,0.250237039743928,0,3.95079858792754,2.14541457059314,3.75595147266492,0.680593098960126,0.179389635688862,2.98980344345994,3.60284231971255,0.900273288253207,3.81294358182224,0.772921620136887,1.67505170698431,0.506328996723799,0.0974370051611986,1.00973509697646,2.11714766877288,3.39456719319505,2.13005755509969,0.806016785821122,2.03472710772585,0,0,0.286804595389004,0,0,0,0,0,0,1.56449532329816,0,2.76269842704961,6.03678306441573,29.597058748453,0,0,0,0,0,0,0,0,0,0,2.80483547606892,1.6462960453256,0,0,0,0,0,0,7.03428022223955,0.329250856225877,0,0,0.555530670951178,5.2129328849652,7.27954349695705,2.88662684050547,1.85488647960123,1.05667824812239,0,0.925971025153221,0,0,0,0,0,0,0,0,0.141775097242386,0.53735113621709,0.581267877027924,0.383382679165211,0,0,0,0,0,0,0,0,1.71072446022705,0,0,0,2.01835951821649,2.1798003441664,0.36669142910475,0.646358578788889,17.8828222925941,0,0,1.04007436911366,24.9491153034278,9.92943924162948,11.7225758767084,0.285955987316295,14.1081617401775,1.64648067356154,0,0,3.16780749173372,3.31583314765545,5.22920075160176,3.29910870900788,0,0,0,6.23024624278115,3.44585807502342,0,0.289562613335158,1.2328579353023,0,0,0,0,0,0.508189248444927,0,0,0,0,0,0,0,25.8879047527385,41.0139827268935,47.4713791474537,0.207970861530807,0.178428988797162,0,0,10.2321673907424,0,7.24311499047534,13.2845119707087,24.8898377531299,5.38678409702114,7.63624514104688,9.95115929051482,0,0,0,0,0,1.5119514666484,0.496215615637554,0,0,0.896974044789907,1.02341449813341,1.12597744800525,2.96836132889982,0.771048469013278,1.77561725313127,5.33826514089759,1.03850885836724,1.85936605535935,0,0.601519410909855,0,3.4444334449382,7.64782905628212,17.9640448494411,0.451199612907412,0.15403067420883,9.41219723012226,2.92278449306521,0.73886140225013,0,0,0,0,9.212178876491,23.5794193711781,0.254876273045038,0.831076008928724,1.79099803777743,0,0,0.256450125116389,0.328014645699706,0.650756789328606,0,0,0,0,0,8.03419649220798,6.67027956215642,4.46740989632469,4.1445992176055,0.551346289938122,7.30457665104261,7.39585138962565,3.32383846922794,1.95870478422822,0.165284915360978,0,0,0.10115778085555,0,0.31481234683064,0.6970372701606,0.924100740528266,0,0.869932992075073,2.03856641014312,0.715624433709956,2.97726695487734,9.8077621662805,9.72213989011507,30.7077349573601,3.85145089230528,2.22742273548156,0,0.719489830333259,0.823611089208164,2.5918728516051,0.606547444719948,1.58510321173008,0.421258456238981,5.36397112998549,0,0,2.32049849393576,1.27264888758341,0,0.551365343546124,0,2.63070531152258,28.9387767133344,5.9030527684197,1.62328301570163,0.92947049429925,0.845086807596724,3.29846110069318,7.46692711699721,0.7133421029625,1.06428319221179,7.81098250601357,1.97576935775941,8.72788299661145,31.4941248220485,0.0962221127255121,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.933118762985422,0,0,0,0.0986434056369336,0,2.22273980289274,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0.120596438625408,0,0,0,0,0,0,0.0769502585037971,0.227884111694002,0,0.0897576444097721,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0.067401132980677,0.802577647298789,0,0,0,0.242780379534093,0,0,0.30607276163049,0.189559738885464,0,0,0,0,0,0,0,0.277349346026277,0,0,0,0,28.8936534552316,0,0,0,0.0969890164884194,0,0.225980740780532,0.274083849293502,0,0.126621591911757,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0.418411385249333,0,0,0.600420288709789,0,0,0,0,0,0.22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| |||
|short_description=p1@GDF5 | |||
}} |
Revision as of 10:57, 21 January 2014
Short description: | p1@GDF5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GDF5_5end |
Coexpression cluster: | C2614_mesenchymal_leiomyoma_mesothelioma_Anulus_Nucleus_Smooth_epithelioid |
Association with transcript: | 0bp_to_ENST00000374369, NM_000557, uc002xck.1_5end |
EntrezGene: | GDF5 |
HGNC: | 4220 |
UniProt: | P43026 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.28e-14 | 76 |
multi fate stem cell | 2.02e-11 | 427 |
somatic stem cell | 7.99e-11 | 433 |
stem cell | 4.63e-10 | 441 |
muscle cell | 3.40e-09 | 55 |
mesenchymal stem cell of the bone marrow | 4.63e-09 | 6 |
stromal cell | 5.15e-09 | 28 |
muscle precursor cell | 5.25e-09 | 58 |
myoblast | 5.25e-09 | 58 |
multi-potent skeletal muscle stem cell | 5.25e-09 | 58 |
connective tissue cell | 2.15e-08 | 361 |
electrically responsive cell | 1.54e-07 | 61 |
electrically active cell | 1.54e-07 | 61 |