FFCP PHASE1:Mm9::chr8:48374748..48374765,-: Difference between revisions
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{{FFCP|EntrezGene=71069|HGNC=|MCL_coexpression_id=3678|UniProt=Q499E5|association_with_transcript=0bp_to_ENSMUST00000079195,NM_001114311,uc009lqw.2,uc009lqx.2_5end|description=CAGE_peak_2_at_Stox2_5end|id=chr8:48374748..48374765,-|ontology_enrichment_celltype=CL:0000540!1.15e-16!33;CL:0000047!1.15e-16!33;CL:0000031!1.15e-16!33;CL:0000404!1.15e-16!33;CL:0002319!2.14e-15!43;CL:0000221!5.40e-15!44;CL:0000133!5.40e-15!44;CL:0000393!7.52e-14!39;CL:0000211!7.52e-14!39;CL:0000117!9.78e-14!23;CL:0000337!9.78e-14!23;CL:0000055!1.81e-12!50|ontology_enrichment_celltype_v019_2=CL:0000540,1.69e-17,33;CL:0000047,1.69e-17,33;CL:0000031,1.69e-17,33;CL:0000404,1.69e-17,33;CL:0002319,1.90e-15,43;CL:0000221,4.86e-15,44;CL:0000133,4.86e-15,44;CL:0000117,2.09e-14,23;CL:0000337,2.09e-14,23;CL:0000393,5.58e-14,39;CL:0000211,5.58e-14,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!4.06e-28!73;UBERON:0005743!4.06e-28!73;UBERON:0000073!1.01e-26!75;UBERON:0001016!1.01e-26!75;UBERON:0004121!1.15e-26!102;UBERON:0000924!1.15e-26!102;UBERON:0006601!1.15e-26!102;UBERON:0002346!2.60e-23!71;UBERON:0003075!2.60e-23!71;UBERON:0007284!2.60e-23!71;UBERON:0000033!1.47e-20!63;UBERON:0001049!2.60e-19!52;UBERON:0005068!2.60e-19!52;UBERON:0006241!2.60e-19!52;UBERON:0007135!2.60e-19!52;UBERON:0000955!3.43e-18!50;UBERON:0006238!3.43e-18!50;UBERON:0003056!4.22e-18!49;UBERON:0002616!1.27e-17!49;UBERON:0003080!3.22e-14!40;UBERON:0002020!4.24e-14!34;UBERON:0002780!1.35e-13!39;UBERON:0001890!1.35e-13!39;UBERON:0006240!1.35e-13!39;UBERON:0002791!3.06e-11!29;UBERON:0003528!3.06e-11!29;UBERON:0001893!3.06e-11!29;UBERON:0000468!8.37e-11!333;UBERON:0000153!1.57e-09!94;UBERON:0007811!3.56e-08!86;UBERON:0000922!4.61e-08!328;UBERON:0000025!6.08e-08!114;UBERON:0004111!1.16e-07!122;UBERON:0000956!6.53e-07!21;UBERON:0001869!6.53e-07!21;UBERON:0000203!6.53e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.32e-29,73;UBERON:0001016,2.39e-27,75;UBERON:0004121,3.09e-27,95;UBERON:0000924,3.09e-27,95;UBERON:0006601,3.09e-27,95;UBERON:0002346,6.09e-25,64;UBERON:0003075,6.09e-25,64;UBERON:0007284,6.09e-25,64;UBERON:0010314,1.49e-22,92;UBERON:0010371,1.67e-22,73;UBERON:0000073,2.27e-21,54;UBERON:0001049,6.22e-20,52;UBERON:0005068,6.22e-20,52;UBERON:0006241,6.22e-20,52;UBERON:0007135,6.22e-20,52;UBERON:0003056,5.18e-19,49;UBERON:0000955,9.28e-17,47;UBERON:0006238,9.28e-17,47;UBERON:0002616,3.54e-16,46;UBERON:0003080,6.47e-15,40;UBERON:0002020,8.65e-15,34;UBERON:0002780,2.95e-14,39;UBERON:0001890,2.95e-14,39;UBERON:0006240,2.95e-14,39;UBERON:0003528,8.96e-12,29;UBERON:0002791,8.96e-12,29;UBERON:0001893,8.96e-12,29;UBERON:0000025,1.67e-07,114;UBERON:0000956,3.30e-07,21;UBERON:0001869,3.30e-07,21;UBERON:0000203,3.30e-07,21;UBERON:0004111,4.06e-07,122|phase1_expression=3.04282809499109,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61582251287033,0,0,0,0.22940928106717,0,0,0,0,0,0,0,0,0,0.288851619751275,0.332469290716985,0.408338712524738,0,0,0,0,0,0,2.01434908760924,1.82478476195126,0.550640256485045,0.782391344348039,4.79655344036982,2.41654801007919,4.6663175777828,2.79972843250725,1.43752564364972,0,0,0,1.02903774414379,0.573066879877513,1.03134418455488,10.7227724255587,7.40587370980846,10.1413024560989,0.338844532069132,0.889294796111139,0,0,0,2.39680088414724,4.2264013585371,4.56234294157302,4.45519596494579,2.94454945891935,6.28432165688368,3.97563373712904,4.65465037016825,4.79227355091182,5.51531271966013,9.91042928994498,6.00130489000382,10.2916377281683,13.3205150607496,9.97215315266265,11.9810075228055,4.4669279840221,9.00420176050688,5.80633341551878,11.1958862479994,11.2473627831291,10.2519695203915,0.37863096666592,0.226714680320357,0,0,0,0,0,0,1.40444420131752,0,0,0,1.12674735821344,0,0,0,0.216491041011214,0,0,0.45673551887624,0,2.82040064223167,1.21439728736295,1.52232739156071,2.7673859670727,2.11011696773672,2.3517741427141,1.38233250462643,0,2.16899035379867,0.884610551949874,1.7794353494215,1.32504911076236,1.93950101254089,0,2.63502717310392,3.77004072264219,0.766371165625774,0,0,0,8.53806644607489,6.40500843946077,5.02617408451458,4.17178368461463,4.34716277461562,7.68815764870372,5.19172041816825,2.24046600470696,1.61729061793121,2.27450482590307,2.94618598241064,4.16385417480652,4.59804208866946,5.58192602396583,3.76762044589288,5.23881043465224,6.40568601424249,5.62210347358373,5.69147415625834,6.25147179505242,7.37513712654495,3.87092473160687,4.60311038097907,2.78047249225598,2.43776516565517,2.67516777330327,3.38358253591438,0,0,0,2.89976081549703,2.57978665979206,2.34080679899319,4.02466050494857,2.55793501271625,1.85120535464854,3.25547522650571,2.68273401399619,2.21854150497622,2.46839774870221,2.95501435342371,2.59420190546738,0.877199924551994,1.53685080703735,1.8788898626452,1.89260953707715,2.6755199218614,0,0.264450566663544,3.62590025909898,3.0190767341857,1.9330119198314,2.21851877085677,2.00140239460383,1.14135375667535,0.474529061544512,1.4822905925161,1.25667604400135,0.994782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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:71069 | |||
|HGNC= | |||
|MCL_coexpression_id=3678 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q499E5 | |||
|association_with_transcript=0bp_to_ENSMUST00000079195,NM_001114311,uc009lqw.2,uc009lqx.2_5end | |||
|cluster_id=chr8:48374748..48374765,- | |||
|description=CAGE_peak_2_at_Stox2_5end | |||
|id=chr8:48374748..48374765,- | |||
|ontology_enrichment_celltype=CL:0000540!1.15e-16!33;CL:0000047!1.15e-16!33;CL:0000031!1.15e-16!33;CL:0000404!1.15e-16!33;CL:0002319!2.14e-15!43;CL:0000221!5.40e-15!44;CL:0000133!5.40e-15!44;CL:0000393!7.52e-14!39;CL:0000211!7.52e-14!39;CL:0000117!9.78e-14!23;CL:0000337!9.78e-14!23;CL:0000055!1.81e-12!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.69e-17,33;CL:0000047,1.69e-17,33;CL:0000031,1.69e-17,33;CL:0000404,1.69e-17,33;CL:0002319,1.90e-15,43;CL:0000221,4.86e-15,44;CL:0000133,4.86e-15,44;CL:0000117,2.09e-14,23;CL:0000337,2.09e-14,23;CL:0000393,5.58e-14,39;CL:0000211,5.58e-14,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.06e-28!73;UBERON:0005743!4.06e-28!73;UBERON:0000073!1.01e-26!75;UBERON:0001016!1.01e-26!75;UBERON:0004121!1.15e-26!102;UBERON:0000924!1.15e-26!102;UBERON:0006601!1.15e-26!102;UBERON:0002346!2.60e-23!71;UBERON:0003075!2.60e-23!71;UBERON:0007284!2.60e-23!71;UBERON:0000033!1.47e-20!63;UBERON:0001049!2.60e-19!52;UBERON:0005068!2.60e-19!52;UBERON:0006241!2.60e-19!52;UBERON:0007135!2.60e-19!52;UBERON:0000955!3.43e-18!50;UBERON:0006238!3.43e-18!50;UBERON:0003056!4.22e-18!49;UBERON:0002616!1.27e-17!49;UBERON:0003080!3.22e-14!40;UBERON:0002020!4.24e-14!34;UBERON:0002780!1.35e-13!39;UBERON:0001890!1.35e-13!39;UBERON:0006240!1.35e-13!39;UBERON:0002791!3.06e-11!29;UBERON:0003528!3.06e-11!29;UBERON:0001893!3.06e-11!29;UBERON:0000468!8.37e-11!333;UBERON:0000153!1.57e-09!94;UBERON:0007811!3.56e-08!86;UBERON:0000922!4.61e-08!328;UBERON:0000025!6.08e-08!114;UBERON:0004111!1.16e-07!122;UBERON:0000956!6.53e-07!21;UBERON:0001869!6.53e-07!21;UBERON:0000203!6.53e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.32e-29,73;UBERON:0001016,2.39e-27,75;UBERON:0004121,3.09e-27,95;UBERON:0000924,3.09e-27,95;UBERON:0006601,3.09e-27,95;UBERON:0002346,6.09e-25,64;UBERON:0003075,6.09e-25,64;UBERON:0007284,6.09e-25,64;UBERON:0010314,1.49e-22,92;UBERON:0010371,1.67e-22,73;UBERON:0000073,2.27e-21,54;UBERON:0001049,6.22e-20,52;UBERON:0005068,6.22e-20,52;UBERON:0006241,6.22e-20,52;UBERON:0007135,6.22e-20,52;UBERON:0003056,5.18e-19,49;UBERON:0000955,9.28e-17,47;UBERON:0006238,9.28e-17,47;UBERON:0002616,3.54e-16,46;UBERON:0003080,6.47e-15,40;UBERON:0002020,8.65e-15,34;UBERON:0002780,2.95e-14,39;UBERON:0001890,2.95e-14,39;UBERON:0006240,2.95e-14,39;UBERON:0003528,8.96e-12,29;UBERON:0002791,8.96e-12,29;UBERON:0001893,8.96e-12,29;UBERON:0000025,1.67e-07,114;UBERON:0000956,3.30e-07,21;UBERON:0001869,3.30e-07,21;UBERON:0000203,3.30e-07,21;UBERON:0004111,4.06e-07,122 | |||
|phase1_expression=3.04282809499109,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61582251287033,0,0,0,0.22940928106717,0,0,0,0,0,0,0,0,0,0.288851619751275,0.332469290716985,0.408338712524738,0,0,0,0,0,0,2.01434908760924,1.82478476195126,0.550640256485045,0.782391344348039,4.79655344036982,2.41654801007919,4.6663175777828,2.79972843250725,1.43752564364972,0,0,0,1.02903774414379,0.573066879877513,1.03134418455488,10.7227724255587,7.40587370980846,10.1413024560989,0.338844532069132,0.889294796111139,0,0,0,2.39680088414724,4.2264013585371,4.56234294157302,4.45519596494579,2.94454945891935,6.28432165688368,3.97563373712904,4.65465037016825,4.79227355091182,5.51531271966013,9.91042928994498,6.00130489000382,10.2916377281683,13.3205150607496,9.97215315266265,11.9810075228055,4.4669279840221,9.00420176050688,5.80633341551878,11.1958862479994,11.2473627831291,10.2519695203915,0.37863096666592,0.226714680320357,0,0,0,0,0,0,1.40444420131752,0,0,0,1.12674735821344,0,0,0,0.216491041011214,0,0,0.45673551887624,0,2.82040064223167,1.21439728736295,1.52232739156071,2.7673859670727,2.11011696773672,2.3517741427141,1.38233250462643,0,2.16899035379867,0.884610551949874,1.7794353494215,1.32504911076236,1.93950101254089,0,2.63502717310392,3.77004072264219,0.766371165625774,0,0,0,8.53806644607489,6.40500843946077,5.02617408451458,4.17178368461463,4.34716277461562,7.68815764870372,5.19172041816825,2.24046600470696,1.61729061793121,2.27450482590307,2.94618598241064,4.16385417480652,4.59804208866946,5.58192602396583,3.76762044589288,5.23881043465224,6.40568601424249,5.62210347358373,5.69147415625834,6.25147179505242,7.37513712654495,3.87092473160687,4.60311038097907,2.78047249225598,2.43776516565517,2.67516777330327,3.38358253591438,0,0,0,2.89976081549703,2.57978665979206,2.34080679899319,4.02466050494857,2.55793501271625,1.85120535464854,3.25547522650571,2.68273401399619,2.21854150497622,2.46839774870221,2.95501435342371,2.59420190546738,0.877199924551994,1.53685080703735,1.8788898626452,1.89260953707715,2.6755199218614,0,0.264450566663544,3.62590025909898,3.0190767341857,1.9330119198314,2.21851877085677,2.00140239460383,1.14135375667535,0.474529061544512,1.4822905925161,1.25667604400135,0.994782360205754,0.974820435595601,0,0.864552199498777,0.398282546508734,2.27601481143698,1.02823661348756,3.38123207019241,1.4255592949172,0.775809948670503,1.75339549725796,0.948548056863859,0.590440591918409,0.31399745568275,0,0,0.500535317148282,0.196558995113203,0.899448449539415,0.202860121388503,0,0.25462585178142,0.287696137450811,0,0,1.43768206527355,0,0.312037673114561,0,0.179397413521912,0,0.739012760666419,1.70542270593436,1.79261474086228,0.509235257325564,0.938760993154008,2.34508760418542,2.85652369063216,1.17080188714679,4.25614889086716,4.20782910332672,3.82691444777969,1.96635977658886,2.41758974612254,1.3018415272336,0,0,1.96705709207614,0.827810238914197,7.38532713943843,6.68106613575558,0,3.7870639080656,2.83957397474631,1.95219372148319,6.03185513651837,4.30143836314594,3.56477878531831,4.81230102341015,4.45291771842384,5.26060544240361,6.7198922250909,6.10510501201433,1.70328102249922,2.13678724400706,2.44330439030364,1.48473110675282,0,0.728341908464944,0.302323556964751,0.565815239267694,2.06711325016541,0.614870295887855,1.03371317267288,0.363533729477506,1.42598951353889,1.26414703174326,2.10837217149998,3.09406629744561,4.08527526904546,5.40183282093931,4.13947788104814,2.57204442037911,3.3694644392032,2.49716344642899,2.46823530903181,2.13125464380219,0.23467170806371,1.0591603543191,2.8668691747145,1.15420377059036,2.42196640043858,1.68876189798836,1.19372344003136,1.14898629821543,0.874442509889552,6.30446026835733,0,1.44470807574256,0,0,0,0,0,0,0,0,4.11236791655476,3.04979200690273,1.51207477150522,2.29997125615916,1.31017538247707,1.07891477107857,1.90102948168273,0.785267825952089,1.03691978633434,0,0,8.97099276263873,6.45288112782681,5.83353565032143,6.32883135040882,5.74450826668646,4.3422178298929,2.8644964665669,0.629156066554265,0,0.576060012515731,0.316011120628178,1.62180172232131,1.02710957164827,0.389762468933385,0.716106782669926,0.39736270956253,0.360586348559907,0,0.201932899896295,0.15241361331,0,0.0974578807397524,0,0,0.680191150845634,0,0.179427713218951,0,1.73870634628971,0.93841237725591,0.915758121336325,0.214368379079066,3.51100472824754,2.82375921308533,5.9842280745933,2.86447756719698,2.92150409984269,4.11049511862385,7.55393897389701,4.05013500139084,2.2516060161211,4.53142408984205,6.21312374102184,3.42498247027783,6.78342284781753,4.26834014385335,4.37592090722929,3.35381060204772,3.12533964365024,3.11145418922261,1.64828045791115,2.56735367673452,2.52697211763797,3.54871019846336,1.88626341386076,2.52832070168682,2.4969809437899,2.29741875822453,2.85776214769844,3.59241410429052,4.62982129112892,2.06042950401653,4.12156976376312,2.74295401908332,1.4198064492747,1.66905332963125,2.76158191601424,2.35273451038327,2.62305284464197,2.37806364734604,2.10455769150274,2.17286582153379,1.68342681497322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| |||
|short_description=p2@Stox2 | |||
}} |
Revision as of 21:25, 3 August 2015
Short description: | p2@Stox2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Stox2_5end |
Coexpression cluster: | MCL_coexpression_mm9:3678 |
Association with transcript: | 0bp_to_ENSMUST00000079195, NM_001114311, uc009lqw.2, uc009lqx.2_5end |
EntrezGene: | 71069 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.69e-17 | 33 |
neuronal stem cell | 1.69e-17 | 33 |
neuroblast | 1.69e-17 | 33 |
electrically signaling cell | 1.69e-17 | 33 |
neural cell | 1.90e-15 | 43 |
ectodermal cell | 4.86e-15 | 44 |
neurectodermal cell | 4.86e-15 | 44 |
CNS neuron (sensu Vertebrata) | 2.09e-14 | 23 |
neuroblast (sensu Vertebrata) | 2.09e-14 | 23 |
electrically responsive cell | 5.58e-14 | 39 |
electrically active cell | 5.58e-14 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 3.32e-29 | 73 |
nervous system | 2.39e-27 | 75 |
ectoderm-derived structure | 3.09e-27 | 95 |
ectoderm | 3.09e-27 | 95 |
presumptive ectoderm | 3.09e-27 | 95 |
neurectoderm | 6.09e-25 | 64 |
neural plate | 6.09e-25 | 64 |
presumptive neural plate | 6.09e-25 | 64 |
structure with developmental contribution from neural crest | 1.49e-22 | 92 |
ecto-epithelium | 1.67e-22 | 73 |
regional part of nervous system | 2.27e-21 | 54 |
neural tube | 6.22e-20 | 52 |
neural rod | 6.22e-20 | 52 |
future spinal cord | 6.22e-20 | 52 |
neural keel | 6.22e-20 | 52 |
pre-chordal neural plate | 5.18e-19 | 49 |
brain | 9.28e-17 | 47 |
future brain | 9.28e-17 | 47 |
regional part of brain | 3.54e-16 | 46 |
anterior neural tube | 6.47e-15 | 40 |
gray matter | 8.65e-15 | 34 |
regional part of forebrain | 2.95e-14 | 39 |
forebrain | 2.95e-14 | 39 |
future forebrain | 2.95e-14 | 39 |
brain grey matter | 8.96e-12 | 29 |
regional part of telencephalon | 8.96e-12 | 29 |
telencephalon | 8.96e-12 | 29 |
tube | 1.67e-07 | 114 |
cerebral cortex | 3.30e-07 | 21 |
cerebral hemisphere | 3.30e-07 | 21 |
pallium | 3.30e-07 | 21 |
anatomical conduit | 4.06e-07 | 122 |