FFCP PHASE1:Mm9::chrX:72341224..72341261,+: Difference between revisions
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{{FFCP|EntrezGene=245474|HGNC=|MCL_coexpression_id=361|UniProt=Q9ESX5|association_with_transcript=31bp_to_ENSMUST00000033776,NM_001030307,uc009tpo.2_5end|description=CAGE_peak_2_at_Dkc1_5end|id=chrX:72341224..72341261,+|ontology_enrichment_celltype=CL:0000117!9.30e-11!23;CL:0000337!9.30e-11!23;CL:0000540!1.77e-08!33;CL:0000047!1.77e-08!33;CL:0000031!1.77e-08!33;CL:0000404!1.77e-08!33|ontology_enrichment_celltype_v019_2=CL:0000117,4.99e-11,23;CL:0000337,4.99e-11,23;CL:0000540,1.44e-08,33;CL:0000047,1.44e-08,33;CL:0000031,1.44e-08,33;CL:0000404,1.44e-08,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!1.31e-22!63;UBERON:0002346!1.23e-21!71;UBERON:0003075!1.23e-21!71;UBERON:0007284!1.23e-21!71;UBERON:0003056!1.91e-19!49;UBERON:0001049!2.14e-19!52;UBERON:0005068!2.14e-19!52;UBERON:0006241!2.14e-19!52;UBERON:0007135!2.14e-19!52;UBERON:0000955!3.22e-19!50;UBERON:0006238!3.22e-19!50;UBERON:0002616!1.37e-18!49;UBERON:0001017!2.05e-18!73;UBERON:0005743!2.05e-18!73;UBERON:0004121!2.66e-18!102;UBERON:0000924!2.66e-18!102;UBERON:0006601!2.66e-18!102;UBERON:0000073!1.63e-17!75;UBERON:0001016!1.63e-17!75;UBERON:0003080!1.04e-15!40;UBERON:0002020!4.48e-15!34;UBERON:0002780!4.92e-15!39;UBERON:0001890!4.92e-15!39;UBERON:0006240!4.92e-15!39;UBERON:0000153!9.58e-15!94;UBERON:0007811!9.36e-14!86;UBERON:0002791!3.02e-13!29;UBERON:0003528!3.02e-13!29;UBERON:0001893!3.02e-13!29;UBERON:0004111!5.50e-12!122;UBERON:0000025!1.96e-11!114;UBERON:0000956!4.09e-09!21;UBERON:0001869!4.09e-09!21;UBERON:0000203!4.09e-09!21;UBERON:0000468!1.42e-08!333;UBERON:0002619!1.04e-07!17;UBERON:0000475!1.47e-07!200;UBERON:0000477!9.91e-07!154|ontology_enrichment_uberon_v019_2=UBERON:0002346,6.79e-24,64;UBERON:0003075,6.79e-24,64;UBERON:0007284,6.79e-24,64;UBERON:0010314,9.80e-24,92;UBERON:0010371,3.14e-22,73;UBERON:0000073,3.97e-21,54;UBERON:0001049,7.04e-20,52;UBERON:0005068,7.04e-20,52;UBERON:0006241,7.04e-20,52;UBERON:0007135,7.04e-20,52;UBERON:0003056,1.05e-19,49;UBERON:0004121,3.74e-19,95;UBERON:0000924,3.74e-19,95;UBERON:0006601,3.74e-19,95;UBERON:0001017,5.94e-19,73;UBERON:0001016,6.68e-18,75;UBERON:0000955,7.80e-18,47;UBERON:0006238,7.80e-18,47;UBERON:0002616,3.34e-17,46;UBERON:0003080,7.24e-16,40;UBERON:0002020,1.79e-15,34;UBERON:0002780,3.57e-15,39;UBERON:0001890,3.57e-15,39;UBERON:0006240,3.57e-15,39;UBERON:0003528,1.37e-13,29;UBERON:0002791,1.37e-13,29;UBERON:0001893,1.37e-13,29;UBERON:0004111,1.72e-11,122;UBERON:0000025,4.62e-11,114;UBERON:0000956,2.45e-09,21;UBERON:0001869,2.45e-09,21;UBERON:0000203,2.45e-09,21;UBERON:0002619,6.86e-08,17|phase1_expression=3.52327463630547,0,0,0,0,0.33575854382378,0.467225281191051,0.774739940649458,0.563154888606667,0.936258105287974,0.513653904676515,0.159544317990673,0.856003649656029,0.874204024189974,0.333109761815663,0.404950534779652,1.39912375625629,1.10411757875383,1.7824876368746,1.69755860719212,2.63634199468316,0.496454756004426,0,0.159992422793407,0.22940928106717,0,0,0.215471232685889,0.380046838912748,0,0.443461021310609,0,0.61506478758457,0,0.288851619751275,0.997407872150954,0,0.418531630736908,0.7813353445238,0,0,1.36609096991689,0,0.377690453926732,0.811015449756117,0.734187008646726,0,1.96222640742402,1.09843091367236,1.74986909166855,1.39986421625363,1.43752564364972,1.00669563634642,2.17608642603403,0.336093799142464,0.514518872071894,0.85960031981627,1.03134418455488,4.24864567805155,3.70293685490423,3.1691570175309,0,0.889294796111139,0,0,0,0,0.384218305321555,3.83651565541367,3.64516033495565,2.73422449756797,4.57041575046086,2.87129103237098,3.79721477566358,4.50473713785711,4.5960939330501,4.40463523997555,7.2781782708557,7.68032666281217,4.48413378282659,4.84884511092771,4.16730696445408,4.4669279840221,5.6276261003168,7.33431589328689,5.00868595305235,5.12538050876771,2.79599168737951,1.51452386666368,0.68014404096107,0.869593466105033,3.44169550792555,0.679971333707751,0,0.649776417447669,0.448026887097336,2.38755514223978,0.681721290312231,0.259786004602869,0,2.53518155598025,0,0,0,0.865964164044856,0,0.505524445014783,0.79928715803342,1.03575153458869,3.41416919849097,1.90833859442749,0.913396434936424,0.691846491768175,1.80867168663147,2.82212897125692,1.50799909595611,0.494389935468748,3.18118585223806,0,2.91180329905337,1.98757366614354,2.42437626567611,0,11.4184510834503,5.44561437714983,0.255457055208591,1.07833612055328,0.599902730993408,0,9.43681028250383,7.32000964509802,4.64921102817598,7.12679712788333,4.34716277461562,6.64921742590592,7.13861557498134,2.34230536855727,2.23932547098167,2.27450482590307,1.89397670297827,3.6433724029557,3.44853156650209,3.60124259610698,5.57607825992146,6.12328492361951,5.89323113310309,5.34099829990454,4.9153640440413,5.38919982332106,2.83659120251729,2.46331573829528,2.41115305670332,3.61461423993277,2.43776516565517,1.85203922767149,3.18454826909589,0,1.02939162845886,0.568326998791185,2.48550927042602,3.98694301967864,3.96136535214233,2.3674473558521,2.55793501271625,4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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:245474 | |||
|HGNC= | |||
|MCL_coexpression_id=361 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q9ESX5 | |||
|association_with_transcript=31bp_to_ENSMUST00000033776,NM_001030307,uc009tpo.2_5end | |||
|cluster_id=chrX:72341224..72341261,+ | |||
|description=CAGE_peak_2_at_Dkc1_5end | |||
|id=chrX:72341224..72341261,+ | |||
|ontology_enrichment_celltype=CL:0000117!9.30e-11!23;CL:0000337!9.30e-11!23;CL:0000540!1.77e-08!33;CL:0000047!1.77e-08!33;CL:0000031!1.77e-08!33;CL:0000404!1.77e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.99e-11,23;CL:0000337,4.99e-11,23;CL:0000540,1.44e-08,33;CL:0000047,1.44e-08,33;CL:0000031,1.44e-08,33;CL:0000404,1.44e-08,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!1.31e-22!63;UBERON:0002346!1.23e-21!71;UBERON:0003075!1.23e-21!71;UBERON:0007284!1.23e-21!71;UBERON:0003056!1.91e-19!49;UBERON:0001049!2.14e-19!52;UBERON:0005068!2.14e-19!52;UBERON:0006241!2.14e-19!52;UBERON:0007135!2.14e-19!52;UBERON:0000955!3.22e-19!50;UBERON:0006238!3.22e-19!50;UBERON:0002616!1.37e-18!49;UBERON:0001017!2.05e-18!73;UBERON:0005743!2.05e-18!73;UBERON:0004121!2.66e-18!102;UBERON:0000924!2.66e-18!102;UBERON:0006601!2.66e-18!102;UBERON:0000073!1.63e-17!75;UBERON:0001016!1.63e-17!75;UBERON:0003080!1.04e-15!40;UBERON:0002020!4.48e-15!34;UBERON:0002780!4.92e-15!39;UBERON:0001890!4.92e-15!39;UBERON:0006240!4.92e-15!39;UBERON:0000153!9.58e-15!94;UBERON:0007811!9.36e-14!86;UBERON:0002791!3.02e-13!29;UBERON:0003528!3.02e-13!29;UBERON:0001893!3.02e-13!29;UBERON:0004111!5.50e-12!122;UBERON:0000025!1.96e-11!114;UBERON:0000956!4.09e-09!21;UBERON:0001869!4.09e-09!21;UBERON:0000203!4.09e-09!21;UBERON:0000468!1.42e-08!333;UBERON:0002619!1.04e-07!17;UBERON:0000475!1.47e-07!200;UBERON:0000477!9.91e-07!154 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,6.79e-24,64;UBERON:0003075,6.79e-24,64;UBERON:0007284,6.79e-24,64;UBERON:0010314,9.80e-24,92;UBERON:0010371,3.14e-22,73;UBERON:0000073,3.97e-21,54;UBERON:0001049,7.04e-20,52;UBERON:0005068,7.04e-20,52;UBERON:0006241,7.04e-20,52;UBERON:0007135,7.04e-20,52;UBERON:0003056,1.05e-19,49;UBERON:0004121,3.74e-19,95;UBERON:0000924,3.74e-19,95;UBERON:0006601,3.74e-19,95;UBERON:0001017,5.94e-19,73;UBERON:0001016,6.68e-18,75;UBERON:0000955,7.80e-18,47;UBERON:0006238,7.80e-18,47;UBERON:0002616,3.34e-17,46;UBERON:0003080,7.24e-16,40;UBERON:0002020,1.79e-15,34;UBERON:0002780,3.57e-15,39;UBERON:0001890,3.57e-15,39;UBERON:0006240,3.57e-15,39;UBERON:0003528,1.37e-13,29;UBERON:0002791,1.37e-13,29;UBERON:0001893,1.37e-13,29;UBERON:0004111,1.72e-11,122;UBERON:0000025,4.62e-11,114;UBERON:0000956,2.45e-09,21;UBERON:0001869,2.45e-09,21;UBERON:0000203,2.45e-09,21;UBERON:0002619,6.86e-08,17 | |||
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| |||
|short_description=p2@Dkc1 | |||
}} |
Revision as of 10:38, 6 August 2015
Short description: | p2@Dkc1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Dkc1_5end |
Coexpression cluster: | MCL_coexpression_mm9:361 |
Association with transcript: | 31bp_to_ENSMUST00000033776, NM_001030307, uc009tpo.2_5end |
EntrezGene: | 245474 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.99e-11 | 23 |
neuroblast (sensu Vertebrata) | 4.99e-11 | 23 |
neuron | 1.44e-08 | 33 |
neuronal stem cell | 1.44e-08 | 33 |
neuroblast | 1.44e-08 | 33 |
electrically signaling cell | 1.44e-08 | 33 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 6.79e-24 | 64 |
neural plate | 6.79e-24 | 64 |
presumptive neural plate | 6.79e-24 | 64 |
structure with developmental contribution from neural crest | 9.80e-24 | 92 |
ecto-epithelium | 3.14e-22 | 73 |
regional part of nervous system | 3.97e-21 | 54 |
neural tube | 7.04e-20 | 52 |
neural rod | 7.04e-20 | 52 |
future spinal cord | 7.04e-20 | 52 |
neural keel | 7.04e-20 | 52 |
pre-chordal neural plate | 1.05e-19 | 49 |
ectoderm-derived structure | 3.74e-19 | 95 |
ectoderm | 3.74e-19 | 95 |
presumptive ectoderm | 3.74e-19 | 95 |
central nervous system | 5.94e-19 | 73 |
nervous system | 6.68e-18 | 75 |
brain | 7.80e-18 | 47 |
future brain | 7.80e-18 | 47 |
regional part of brain | 3.34e-17 | 46 |
anterior neural tube | 7.24e-16 | 40 |
gray matter | 1.79e-15 | 34 |
regional part of forebrain | 3.57e-15 | 39 |
forebrain | 3.57e-15 | 39 |
future forebrain | 3.57e-15 | 39 |
brain grey matter | 1.37e-13 | 29 |
regional part of telencephalon | 1.37e-13 | 29 |
telencephalon | 1.37e-13 | 29 |
anatomical conduit | 1.72e-11 | 122 |
tube | 4.62e-11 | 114 |
cerebral cortex | 2.45e-09 | 21 |
cerebral hemisphere | 2.45e-09 | 21 |
pallium | 2.45e-09 | 21 |
regional part of cerebral cortex | 6.86e-08 | 17 |