UBERON:0000981: Difference between revisions
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|located_in= | |located_in= | ||
|name=femur | |name=femur | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000376;;UBERON:0001441 | |part_of=UBERON:0000376;;UBERON:0001441 | ||
Latest revision as of 17:12, 12 September 2014
| Name: | femur | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "The femur, or thigh bone, is the most proximal (closest to the body) bone of the leg in vertebrates capable of walking or jumping, such as most land mammals, birds, many reptiles such as lizards, and amphibians such as frogs. In vertebrates with four legs, the femur is found only in the rear legs. Some species of whales[1], snakes[2], and other non-walking vertebrates have vestigial femurs. One of the earliest known vertebrates to have a femur is the Eusthenopteron, a prehistoric lobe-finned fish from the Late Devonian period." [Wikipedia:Femur] | ||
| Xrefs: |
| ||
| Synonyms: |
"femoral bone" RELATED [BTO:0001284] "os femorale" RELATED [BTO:0001284] "os femoris" RELATED [BTO:0001284] "os femoris, os longissimum" RELATED LATIN [Wikipedia:Femur] "thigh bone" EXACT [] | ||
| Comments: | homologous to proximal metapterygial mesomere [Hall 2007]. | ||
| Alt_id: | UBERON:FBbt_00004644-FMA_9611-MA_0001359 | ||
| Subset: | uberon_slim |
Gray252.png]
200px-Gray252.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0003608(hindlimb long bone),UBERON:0003826(upper leg bone),UBERON:0008202(bone of hip region),UBERON:0015052(femur endochondral element) |
|---|---|
| develops_from: | UBERON:0010129(femur cartilage element) |
| part_of: | UBERON:0000376(hindlimb stylopod),UBERON:0001441(hindlimb skeleton) |
Children
| derives from: | FF:0011462 (mouse bone- os femoris - neonate N16 sample),FF:0011463 (mouse bone- os femoris - neonate N2 sample),FF:0011464 (mouse bone- os femoris - adult sample),FF:0011467 (mouse bone- os femoris - neonate N20 sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Mouse (Mus musculus)
- 1350-25C3 (bone (os femoris), neonate N20)
- 1525-43A6 (bone (os femoris), neonate N16)
- 1985-43F5 (bone (os femoris), neonate N02)
- 56-12G2 (bone (os femoris), adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000981 (femur), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.4e-49 | FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_6ac31d6946c421accfd0562306034bc3 | p26@Myo18a |
| 3.4e-49 | FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_6ac31d6946c421accfd0562306034bc3 | p26@Myo18a |
| 4.96e-49 | FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_9375c8bd7d58833c1a99da7c9fdee12c | p@chr2:32482372..32482381, + |
| 4.96e-49 | FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_9375c8bd7d58833c1a99da7c9fdee12c | p@chr9:21934585..21934591, - |
| 4.96e-49 | FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_9375c8bd7d58833c1a99da7c9fdee12c | p@chr8:75097542..75097549, + |
| 4.96e-49 | FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_9375c8bd7d58833c1a99da7c9fdee12c | p@chr2:32482372..32482381, + |
| 4.96e-49 | FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_9375c8bd7d58833c1a99da7c9fdee12c | p@chr8:75097542..75097549, + |
| 4.96e-49 | FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_9375c8bd7d58833c1a99da7c9fdee12c | p@chr9:21934585..21934591, - |
| 3.15e-44 | FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_6d7809c25378bb295701ea4d2b23cb3c | p@chr6:51525810..51525817, + |
| 3.15e-44 | FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_6d7809c25378bb295701ea4d2b23cb3c | p@chr6:51525810..51525817, + |
| 9.78e-40 | FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_6fcbc1695446e20e36b01318d4261d1e | p@chr19:4876870..4876880, - |
| 9.78e-40 | FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_6fcbc1695446e20e36b01318d4261d1e | p@chr19:4876870..4876880, - |
| 1.15e-39 | FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_a5d807d8733e2f8badc6454b621077ec | p@chr16:24096441..24096449, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_a5d807d8733e2f8badc6454b621077ec | p@chr6:4490674..4490679, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_a5d807d8733e2f8badc6454b621077ec | p@chr6:4490674..4490679, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_a5d807d8733e2f8badc6454b621077ec | p@chr11:67063327..67063335, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_a5d807d8733e2f8badc6454b621077ec | p@chr16:24096441..24096449, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_a5d807d8733e2f8badc6454b621077ec | p@chr1:174140324..174140335, - |
| 1.15e-39 | FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_a5d807d8733e2f8badc6454b621077ec | p@chr1:174140324..174140335, - |
| 1.15e-39 | FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_a5d807d8733e2f8badc6454b621077ec | p@chr11:67063327..67063335, + |
| 1.55e-39 | FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_82ce2ac21a3ed20589eae8aee1e9078e | p@chr1:174143249..174143260, - |
| 1.55e-39 | FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_82ce2ac21a3ed20589eae8aee1e9078e | p@chr1:174143249..174143260, - |
| 3.03e-39 | FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_4c1f34f08e73622d4c34d4b0260f9300 | p@chr6:51525869..51525891, + |
| 3.03e-39 | FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_4c1f34f08e73622d4c34d4b0260f9300 | p@chr6:51525869..51525891, + |
| 9.31e-39 | FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_6d9145e7ce1715b3f693c0658a9006f5 | p3@Asb16 |
| 9.31e-39 | FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_6d9145e7ce1715b3f693c0658a9006f5 | p3@Asb16 |
| 2.41e-35 | FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_3a7342f03c184f03655cb216b4cbad06 | p@chr7:133604286..133604297, - |
| 2.41e-35 | FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_3a7342f03c184f03655cb216b4cbad06 | p@chr7:133604286..133604297, - |
| 2.95e-35 | FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_44b6e3dbe9a2b4b36bd952f1a01ad1e7 | p5@Pla2g5 |
| 2.95e-35 | FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_44b6e3dbe9a2b4b36bd952f1a01ad1e7 | p5@Pla2g5 |
| 9.53e-34 | FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_fa7062e14773e55f2936816174c0c489 | p2@uc009mdq.1 |
| 9.53e-34 | FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_fa7062e14773e55f2936816174c0c489 | p2@uc009mdq.1 |
| 1.23e-33 | FFCP PHASE2:Mm9::chr2:164773241..164773248,+#_08b5521573ccbe693548c121a07e3a5e | p3@Mmp9 |
| 1.23e-33 | FFCP PHASE1:Mm9::chr2:164773241..164773248,+#_08b5521573ccbe693548c121a07e3a5e | p3@Mmp9 |
| 1.58e-33 | FFCP PHASE2:Mm9::chr7:3567707..3567718,-#_ad3d7c74651f9cb260bd7c329e07c6b6 | p2@Oscar |
| 1.58e-33 | FFCP PHASE2:Mm9::chr1:166815111..166815121,-#_ad3d7c74651f9cb260bd7c329e07c6b6 | p@chr1:166815111..166815121, - |
| 1.58e-33 | FFCP PHASE1:Mm9::chr1:166815111..166815121,-#_ad3d7c74651f9cb260bd7c329e07c6b6 | p@chr1:166815111..166815121, - |
| 1.58e-33 | FFCP PHASE1:Mm9::chr7:3567707..3567718,-#_ad3d7c74651f9cb260bd7c329e07c6b6 | p2@Oscar |
| 2.04e-33 | FFCP PHASE1:Mm9::chr9:70799951..70799962,-#_97032a94cb7083218af512091980205d | p4@Lipc |
| 2.04e-33 | FFCP PHASE2:Mm9::chr9:70799951..70799962,-#_97032a94cb7083218af512091980205d | p4@Lipc |
| 2.04e-33 | FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_97032a94cb7083218af512091980205d | p@chr11:75409652..75409664, + |
| 2.04e-33 | FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_97032a94cb7083218af512091980205d | p@chr11:75409652..75409664, + |
| 3.38e-33 | FFCP PHASE1:Mm9::chr15:102196702..102196713,-#_b0c1ad921d6688281d3bcb853acad0ba | p6@Sp7 |
| 3.38e-33 | FFCP PHASE2:Mm9::chr15:102196702..102196713,-#_b0c1ad921d6688281d3bcb853acad0ba | p6@Sp7 |
| 7.17e-33 | FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_d79d2ea46e27a70f1b1425053cc563be | p@chr8:126415826..126415839, + |
| 7.17e-33 | FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_d79d2ea46e27a70f1b1425053cc563be | p@chr8:126415826..126415839, + |
| 7.17e-33 | FFCP PHASE1:Mm9::chr18:76271498..76271508,+#_d79d2ea46e27a70f1b1425053cc563be | p@chr18:76271498..76271508, + |
| 7.17e-33 | FFCP PHASE2:Mm9::chr18:76271498..76271508,+#_d79d2ea46e27a70f1b1425053cc563be | p@chr18:76271498..76271508, + |
| 2.67e-30 | FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_b253433be0108db102f469984b90347c | p@chr2:32482387..32482399, + |
| 2.67e-30 | FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_b253433be0108db102f469984b90347c | p@chr2:32482387..32482399, + |
| 1.1e-29 | FFCP PHASE2:Mm9::chr15:58649683..58649688,-#_ed77989eb67dad88f736c95c7f38d2d2 | p@chr15:58649683..58649688, - |
| 1.1e-29 | FFCP PHASE1:Mm9::chr15:58649683..58649688,-#_ed77989eb67dad88f736c95c7f38d2d2 | p@chr15:58649683..58649688, - |
| 1.1e-29 | FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_ed77989eb67dad88f736c95c7f38d2d2 | p@chr12:70396969..70396979, + |
| 1.1e-29 | FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_ed77989eb67dad88f736c95c7f38d2d2 | p@chr12:70396969..70396979, + |
| 1.46e-29 | FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_11227fa48155dd5623764d90c5c25b38 | p@chr7:133590998..133591009, - |
| 1.46e-29 | FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_11227fa48155dd5623764d90c5c25b38 | p@chr7:133590998..133591009, - |
| 1.73e-29 | FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_27f11e159d835dc6ce6dbc22792aad39 | p2@Myoz3 |
| 1.73e-29 | FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_27f11e159d835dc6ce6dbc22792aad39 | p2@Myoz3 |
| 2.42e-29 | FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_15efc64329dd7b6e80b898743ddeffd3 | p2@Myh4 |
| 2.42e-29 | FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_15efc64329dd7b6e80b898743ddeffd3 | p2@Myh4 |
| 7.46e-29 | FFCP PHASE1:Mm9::chr1:57155729..57155740,-#_3bebb7e2779cdc27672cc532c45c181c | p@chr1:57155729..57155740, - |
| 7.46e-29 | FFCP PHASE2:Mm9::chr1:57155729..57155740,-#_3bebb7e2779cdc27672cc532c45c181c | p@chr1:57155729..57155740, - |
| 9.26e-29 | FFCP PHASE1:Mm9::chr4:43597258..43597265,-#_5af86bea4954e52018f2f9802e24dbe4 | p1@Msmp |
| 9.26e-29 | FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_5af86bea4954e52018f2f9802e24dbe4 | p@chr11:67056544..67056589, - |
| 9.26e-29 | FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_5af86bea4954e52018f2f9802e24dbe4 | p@chr11:67056544..67056589, - |
| 9.26e-29 | FFCP PHASE2:Mm9::chr4:43597258..43597265,-#_5af86bea4954e52018f2f9802e24dbe4 | p1@Msmp |
| 1.15e-28 | FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_f28cc19ca6a1e62daf953a4d5dd70877 | p@chr6:90552017..90552024, + |
| 1.15e-28 | FFCP PHASE1:Mm9::chrY:2858251..2858257,+#_f28cc19ca6a1e62daf953a4d5dd70877 | p@chrY:2858251..2858257, + |
| 1.15e-28 | FFCP PHASE2:Mm9::chrY:2858251..2858257,+#_f28cc19ca6a1e62daf953a4d5dd70877 | p@chrY:2858251..2858257, + |
| 1.15e-28 | FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_f28cc19ca6a1e62daf953a4d5dd70877 | p@chr6:90552017..90552024, + |
| 1.43e-28 | FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_dab350db5b74f17f1054a6278430174d | p@chr6:34436258..34436292, + |
| 1.43e-28 | FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_dab350db5b74f17f1054a6278430174d | p@chr6:34436258..34436292, + |
| 2.2e-28 | FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_9c3e0fcb5f8cb5cfdc5ef9cde561a426 | p@chr11:67069796..67069817, - |
| 2.2e-28 | FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_9c3e0fcb5f8cb5cfdc5ef9cde561a426 | p@chr11:67069796..67069817, - |
| 2.72e-28 | FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_da41467e3cc2aa8869d9d9f4dc1f9815 | p@chr8:107702369..107702386, + |
| 2.72e-28 | FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_da41467e3cc2aa8869d9d9f4dc1f9815 | p@chr8:107702369..107702386, + |
| 3.45e-28 | FFCP PHASE1:Mm9::chr18:78254135..78254146,-#_1a8aa412732d3268ee666ee14c7cada1 | p1@Siglec15 |
| 3.45e-28 | FFCP PHASE2:Mm9::chr18:78254135..78254146,-#_1a8aa412732d3268ee666ee14c7cada1 | p1@Siglec15 |
| 6.5e-28 | FFCP PHASE2:Mm9::chr7:133591490..133591500,-#_4d4c970f6201cb9cade857eae3f8b4cf | p6@Atp2a1 |
| 6.5e-28 | FFCP PHASE1:Mm9::chr7:133591490..133591500,-#_4d4c970f6201cb9cade857eae3f8b4cf | p6@Atp2a1 |
| 8.9e-28 | FFCP PHASE2:Mm9::chr7:133591156..133591165,-#_e5f711b727ab838ca4ad042f254b7479 | p7@Atp2a1 |
| 8.9e-28 | FFCP PHASE1:Mm9::chr7:133591156..133591165,-#_e5f711b727ab838ca4ad042f254b7479 | p7@Atp2a1 |
| 1.42e-27 | FFCP PHASE2:Mm9::chr7:133592162..133592188,-#_d0411d7a7804860928ff2f3f43d96eac | p@chr7:133592162..133592188, - |
| 1.42e-27 | FFCP PHASE1:Mm9::chr7:133592162..133592188,-#_d0411d7a7804860928ff2f3f43d96eac | p@chr7:133592162..133592188, - |
| 1.42e-27 | FFCP PHASE2:Mm9::chr7:133600635..133600663,+#_d0411d7a7804860928ff2f3f43d96eac | p@chr7:133600635..133600663, + |
| 1.42e-27 | FFCP PHASE1:Mm9::chr7:133600635..133600663,+#_d0411d7a7804860928ff2f3f43d96eac | p@chr7:133600635..133600663, + |
| 6.75e-27 | FFCP PHASE2:Mm9::chr11:94837662..94837673,-#_696a7e38072b51d586276af2f3c7a42b | p4@Sgca |
| 6.75e-27 | FFCP PHASE1:Mm9::chr11:94837662..94837673,-#_696a7e38072b51d586276af2f3c7a42b | p4@Sgca |
| 1.66e-26 | FFCP PHASE2:Mm9::chr5:104754379..104754387,+#_2a81888f46ac23679f3b6766c920c7d1 | p1@Mepe |
| 1.66e-26 | FFCP PHASE1:Mm9::chr5:104754379..104754387,+#_2a81888f46ac23679f3b6766c920c7d1 | p1@Mepe |
| 3.47e-26 | FFCP PHASE2:Mm9::chr12:81581216..81581231,+#_0d0c71a61da0348b9c543e0d8d8183e5 | p@chr12:81581216..81581231, + |
| 3.47e-26 | FFCP PHASE1:Mm9::chr12:81581216..81581231,+#_0d0c71a61da0348b9c543e0d8d8183e5 | p@chr12:81581216..81581231, + |
| 3.47e-26 | FFCP PHASE2:Mm9::chr16:32400888..32400899,+#_0d0c71a61da0348b9c543e0d8d8183e5 | p2@Tm4sf19 |
| 3.47e-26 | FFCP PHASE1:Mm9::chr16:32400888..32400899,+#_0d0c71a61da0348b9c543e0d8d8183e5 | p2@Tm4sf19 |
| 1.12e-25 | FFCP PHASE2:Mm9::chr15:97806574..97806585,-#_5c7a7e55ddcd4d35b16146ed08cb07f6 | p@chr15:97806574..97806585, - |
| 1.12e-25 | FFCP PHASE1:Mm9::chr17:34176173..34176200,+#_5c7a7e55ddcd4d35b16146ed08cb07f6 | p5@Col11a2 |
| 1.12e-25 | FFCP PHASE2:Mm9::chr17:34176173..34176200,+#_5c7a7e55ddcd4d35b16146ed08cb07f6 | p5@Col11a2 |
| 1.12e-25 | FFCP PHASE1:Mm9::chr15:97806574..97806585,-#_5c7a7e55ddcd4d35b16146ed08cb07f6 | p@chr15:97806574..97806585, - |
| 1.36e-25 | FFCP PHASE1:Mm9::chr2:180890942..180890956,-#_e54a05906d2de3631a7a89d1c3eb51e1 | p@chr2:180890942..180890956, - |
| 1.36e-25 | FFCP PHASE1:Mm9::chr18:78254174..78254185,-#_e54a05906d2de3631a7a89d1c3eb51e1 | p2@Siglec15 |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Endochondral longbone connecting the pelvic girdle with posterior zeugopodium.[VSAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Paired, elongate, cylindrical bones of endochondral origin that form the thighs, extending from the pelvic girdles to the knees.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
